CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Acaryochloris marina MBIC11017 (NC_009925 6503725 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 166     Density of SSR      : 1SSR/ 39.18 kb   Average length of SSR  : 12.64 bp
Coding      : 144     Non-Coding           : 21   Coding and Non-Coding : 1
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 2 92 58 6 8 166
IMPERFECT 1 120 1511 1177 131 112 3052
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (GCA)4124669846709Coding
2. (GCC)4125019450205Coding
3. (TCAA)3128239282403Coding
4. (CTG)515138820138834Coding
5. (GCA)515151604151618Coding
6. (GAAG)312157603157614Coding
7. (ATT)412248739248750Non coding
8. (CT)612290386290397Coding
9. (ATTG)312312561312572Non coding
10. (GTT)412323501323512Coding
11. (TAA)412380857380868Coding
12. (GGAC)312414696414707Coding
13. (ATAG)312446972446983Non coding
14. (CGA)412480413480424Coding
15. (TAAT)312491136491147Non coding
16. (TATC)312502574502585Non coding
17. (CGAT)312530825530836Coding
18. (CCTC)312565587565598Coding
19. (GT)612591963591974Non coding
20. (GGAT)312611046611057Coding
21. (CGAA)312692837692848Coding
22. (GGT)515747253747267Coding
23. (ATGG)312761769761780Coding
24. (GTTG)312767438767449Coding
25. (CCGC)312853853853864Coding
26. (ATTGGT)318935686935703Coding
27. (GCA)412962353962364Coding
28. (AAAC)312963243963254Coding
29. (CCAGAT)318987928987945Coding
30. (CCG)412993868993879Coding
31. (GCT)41210528801052891Coding
32. (GGC)41211348661134877Coding
33. (ATTT)31211473481147359Coding
34. (TCCA)31212131061213117Coding
35. (CAA)41212233471223358Coding
36. (GTGAA)31512463541246368Coding
37. (AAAAT)31512748821274896Non coding
38. (GGT)41212928961292907Coding
39. (GCAGTA)31813339531333970Coding
40. (GCA)41213881471388158Coding
41. (GGAT)31214480161448027Coding
42. (TCG)41214754931475504Coding
43. (CTAAA)31516486431648657Non coding
44. (TCTT)31216860801686091Non coding
45. (GCT)41217205241720535Coding
46. (AAC)41217662241766235Coding
47. (CTG)41217678611767872Coding
48. (CAC)41219327241932735Coding
49. (CCTT)31219409081940919Coding
50. (GCA)41219454861945497Coding
51. (AAGC)31219753621975373Coding
52. (CCT)41220454892045500Non coding
53. (CTCA)31220695222069533Coding
54. (TTG)41220761862076197Non coding
55. (CGAA)31221285112128522Coding
56. (GTG)41221969912197002Coding
57. (CTGC)31222005692200580Coding
58. (TGC)41223015482301559Coding
59. (CCT)41223782052378216Coding
60. (CAG)41224188322418843Coding
61. (CCAG)31224266712426682Coding
62. (TGGA)31224269952427006Coding
63. (GCCA)41624369662436981Non coding
64. (AGC)41224626002462611Coding
65. (ACC)41225693112569322Coding
66. (CCA)41225807042580715Coding
67. (GTT)41225868942586905Coding
68. (CTTTGC)31826393252639342Coding
69. (AAAC)31226460812646092Coding
70. (GGCT)31226535942653605Coding
71. (TGA)41226574532657464Coding
72. (ACC)41226654272665438Coding
73. (TATC)31226999622699973Non coding
74. (TATT)31227501262750137Coding
75. (GAT)41228121812812192Coding
76. (ACCC)31228213132821324Coding
77. (CCATT)31528572462857260Coding
78. (CAG)41228657022865713Coding
79. (AGC)41228660632866074Coding
80. (AGAC)31229103912910402Coding
81. (CAAC)31229281142928125Coding
82. (TCG)41229830072983018Coding
83. (CAG)41229891852989196Coding
84. (GCCA)31230648623064873Coding
85. (CAA)41231024213102432Coding
86. (TGC)41231388243138835Coding
87. (ATG)41232004443200455Coding
88. (TTG)41233711323371143Coding
89. (ATGA)31233890553389066Coding-Non coding
90. (GCAG)31233908893390900Coding
91. (ATTT)31234720753472086Coding
92. (TTC)41235725693572580Coding
93. (TTC)41235744963574507Coding
94. (TGCACC)31835901883590205Coding
95. (GAT)41236502793650290Coding
96. (ATTT)31236566503656661Non coding
97. (CTC)41238140433814054Coding
98. (TTA)41238323603832371Coding
99. (AGC)41238489653848976Coding
100. (GCA)41238731853873196Coding
101. (AGCC)31238935483893559Coding
102. (CCTT)31239464123946423Coding
103. (GATGC)31539560253956039Coding
104. (CTG)41239769553976966Coding
105. (TGG)41240227034022714Coding
106. (ACT)61840513964051413Coding
107. (GAA)41240550084055019Coding
108. (TGAT)31240627504062761Coding
109. (ATTT)31240667774066788Coding
110. (CAA)41241068094106820Coding
111. (CGCCCG)42441591644159187Coding
112. (GCA)41242144004214411Coding
113. (CCAGCT)42442864204286443Coding
114. (CCG)61844715054471522Coding
115. (CATT)31244898824489893Coding
116. (CGCC)31245550644555075Coding
117. (GAA)41246003364600347Coding
118. (GGA)41246106794610690Coding
119. (GGT)41246228034622814Coding
120. (ATC)41246404174640428Coding
121. (ACG)41246405524640563Coding
122. (GCA)41246439804643991Coding
123. (CAGC)31247082854708296Coding
124. (GAA)41247316364731647Coding
125. (CTT)41248396344839645Coding
126. (TGC)41248771434877154Coding
127. (GGT)41249633124963323Coding
128. (GATC)31249830784983089Coding
129. (AGGA)31249970004997011Non coding
130. (TCAA)31250053495005360Coding
131. (CCTATT)31850071105007127Coding
132. (AGA)51550644445064458Coding
133. (TGG)41250785385078549Coding
134. (TGA)41251027955102806Coding
135. (GCC)41251107215110732Coding
136. (GCC)41251158315115842Coding
137. (CGA)41251748685174879Coding
138. (ATC)41252096445209655Coding
139. (CTG)41252109765210987Coding
140. (TTAT)31252354325235443Non coding
141. (GCTT)31252525845252595Coding
142. (AAC)41252971105297121Coding
143. (CGA)41253380725338083Coding
144. (AAC)41253416685341679Coding
145. (CGA)41253542195354230Coding
146. (CCG)41253603695360380Coding
147. (TGG)41253620645362075Non coding
148. (ACTCA)31553796505379664Non coding
149. (ATAA)31254411205441131Non coding
150. (ACCC)31254551545455165Coding
151. (GTG)41255575845557595Coding
152. (CTG)41256461375646148Coding
153. (GGGC)31256551425655153Coding
154. (CCAA)31256912535691264Coding
155. (AAAT)31257403925740403Non coding
156. (GAT)41257621175762128Coding
157. (TTG)41258200605820071Coding
158. (GCA)41258775835877594Coding
159. (CCA)41259656865965697Coding
160. (TCT)41260276506027661Coding
161. (GGTC)31261533266153337Coding
162. (TTCA)31262566586256669Non coding
163. (CAA)41262752036275214Coding
164. (GCT)41263555526355563Coding
165. (GCA)41263561196356130Coding
166. (TTG)41263971686397179Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.