CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Acaryochloris marina MBIC11017 (NC_009925 6503725 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 166     Density of SSR      : 1SSR/ 39.18 kb   Average length of SSR  : 12.64 bp
Coding      : 144     Non-Coding           : 21   Coding and Non-Coding : 1
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 2 92 58 6 8 166
IMPERFECT 1 120 1511 1177 131 112 3052
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (GCA)4124669846709Coding
2. (GCC)4125019450205Coding
3. (CTG)515138820138834Coding
4. (GCA)515151604151618Coding
5. (ATT)412248739248750Non coding
6. (GTT)412323501323512Coding
7. (TAA)412380857380868Coding
8. (CGA)412480413480424Coding
9. (GGT)515747253747267Coding
10. (GCA)412962353962364Coding
11. (CCG)412993868993879Coding
12. (GCT)41210528801052891Coding
13. (GGC)41211348661134877Coding
14. (CAA)41212233471223358Coding
15. (GGT)41212928961292907Coding
16. (GCA)41213881471388158Coding
17. (TCG)41214754931475504Coding
18. (GCT)41217205241720535Coding
19. (AAC)41217662241766235Coding
20. (CTG)41217678611767872Coding
21. (CAC)41219327241932735Coding
22. (GCA)41219454861945497Coding
23. (CCT)41220454892045500Non coding
24. (TTG)41220761862076197Non coding
25. (GTG)41221969912197002Coding
26. (TGC)41223015482301559Coding
27. (CCT)41223782052378216Coding
28. (CAG)41224188322418843Coding
29. (AGC)41224626002462611Coding
30. (ACC)41225693112569322Coding
31. (CCA)41225807042580715Coding
32. (GTT)41225868942586905Coding
33. (TGA)41226574532657464Coding
34. (ACC)41226654272665438Coding
35. (GAT)41228121812812192Coding
36. (CAG)41228657022865713Coding
37. (AGC)41228660632866074Coding
38. (TCG)41229830072983018Coding
39. (CAG)41229891852989196Coding
40. (CAA)41231024213102432Coding
41. (TGC)41231388243138835Coding
42. (ATG)41232004443200455Coding
43. (TTG)41233711323371143Coding
44. (TTC)41235725693572580Coding
45. (TTC)41235744963574507Coding
46. (GAT)41236502793650290Coding
47. (CTC)41238140433814054Coding
48. (TTA)41238323603832371Coding
49. (AGC)41238489653848976Coding
50. (GCA)41238731853873196Coding
51. (CTG)41239769553976966Coding
52. (TGG)41240227034022714Coding
53. (ACT)61840513964051413Coding
54. (GAA)41240550084055019Coding
55. (CAA)41241068094106820Coding
56. (GCA)41242144004214411Coding
57. (CCG)61844715054471522Coding
58. (GAA)41246003364600347Coding
59. (GGA)41246106794610690Coding
60. (GGT)41246228034622814Coding
61. (ATC)41246404174640428Coding
62. (ACG)41246405524640563Coding
63. (GCA)41246439804643991Coding
64. (GAA)41247316364731647Coding
65. (CTT)41248396344839645Coding
66. (TGC)41248771434877154Coding
67. (GGT)41249633124963323Coding
68. (AGA)51550644445064458Coding
69. (TGG)41250785385078549Coding
70. (TGA)41251027955102806Coding
71. (GCC)41251107215110732Coding
72. (GCC)41251158315115842Coding
73. (CGA)41251748685174879Coding
74. (ATC)41252096445209655Coding
75. (CTG)41252109765210987Coding
76. (AAC)41252971105297121Coding
77. (CGA)41253380725338083Coding
78. (AAC)41253416685341679Coding
79. (CGA)41253542195354230Coding
80. (CCG)41253603695360380Coding
81. (TGG)41253620645362075Non coding
82. (GTG)41255575845557595Coding
83. (CTG)41256461375646148Coding
84. (GAT)41257621175762128Coding
85. (TTG)41258200605820071Coding
86. (GCA)41258775835877594Coding
87. (CCA)41259656865965697Coding
88. (TCT)41260276506027661Coding
89. (CAA)41262752036275214Coding
90. (GCT)41263555526355563Coding
91. (GCA)41263561196356130Coding
92. (TTG)41263971686397179Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.