CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Acaryochloris marina MBIC11017 (NC_009925 6503725 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 166     Density of SSR      : 1SSR/ 39.18 kb   Average length of SSR  : 12.64 bp
Coding      : 144     Non-Coding           : 21   Coding and Non-Coding : 1
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 2 92 58 6 8 166
IMPERFECT 1 120 1511 1177 131 112 3052
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (TCAA)3128239282403Coding
2. (GAAG)312157603157614Coding
3. (ATTG)312312561312572Non coding
4. (GGAC)312414696414707Coding
5. (ATAG)312446972446983Non coding
6. (TAAT)312491136491147Non coding
7. (TATC)312502574502585Non coding
8. (CGAT)312530825530836Coding
9. (CCTC)312565587565598Coding
10. (GGAT)312611046611057Coding
11. (CGAA)312692837692848Coding
12. (ATGG)312761769761780Coding
13. (GTTG)312767438767449Coding
14. (CCGC)312853853853864Coding
15. (AAAC)312963243963254Coding
16. (ATTT)31211473481147359Coding
17. (TCCA)31212131061213117Coding
18. (GGAT)31214480161448027Coding
19. (TCTT)31216860801686091Non coding
20. (CCTT)31219409081940919Coding
21. (AAGC)31219753621975373Coding
22. (CTCA)31220695222069533Coding
23. (CGAA)31221285112128522Coding
24. (CTGC)31222005692200580Coding
25. (CCAG)31224266712426682Coding
26. (TGGA)31224269952427006Coding
27. (GCCA)41624369662436981Non coding
28. (AAAC)31226460812646092Coding
29. (GGCT)31226535942653605Coding
30. (TATC)31226999622699973Non coding
31. (TATT)31227501262750137Coding
32. (ACCC)31228213132821324Coding
33. (AGAC)31229103912910402Coding
34. (CAAC)31229281142928125Coding
35. (GCCA)31230648623064873Coding
36. (ATGA)31233890553389066Coding-Non coding
37. (GCAG)31233908893390900Coding
38. (ATTT)31234720753472086Coding
39. (ATTT)31236566503656661Non coding
40. (AGCC)31238935483893559Coding
41. (CCTT)31239464123946423Coding
42. (TGAT)31240627504062761Coding
43. (ATTT)31240667774066788Coding
44. (CATT)31244898824489893Coding
45. (CGCC)31245550644555075Coding
46. (CAGC)31247082854708296Coding
47. (GATC)31249830784983089Coding
48. (AGGA)31249970004997011Non coding
49. (TCAA)31250053495005360Coding
50. (TTAT)31252354325235443Non coding
51. (GCTT)31252525845252595Coding
52. (ATAA)31254411205441131Non coding
53. (ACCC)31254551545455165Coding
54. (GGGC)31256551425655153Coding
55. (CCAA)31256912535691264Coding
56. (AAAT)31257403925740403Non coding
57. (GGTC)31261533266153337Coding
58. (TTCA)31262566586256669Non coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.