CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
HOME ABOUT DATABASE ADVANCED SEARCH TUTORIAL STATISTICS CONTACT
       Organism: Anabaena cylindrica PCC 7122 (NC_019771 6395837 bp)                                                               Show Primer       Download
Compound : 2     Perfect Compound : 1   Overlapping Compound : 1
Perfect      : 318     Density of SSR      : 1SSR/ 19.99 kb   Average length of SSR  : 12.96 bp
Coding      : 249     Non-Coding           : 67   Coding and Non-Coding : 4
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 4 172 113 14 15 318
IMPERFECT 0 218 2428 1743 173 184 4746
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (ATT)41242474258Coding
2. (TATTT)31576717685Coding
3. (TTG)4121041110422Coding
4. (AAG)4121483914850Coding
5. (GAA)4122383923850Coding
6. (TTGAG)3152394523959Coding
7. (TCG)4123112531136Coding
8. (GAA)4125627556286Non coding
9. (GAA)4125631456325Non coding
10. (TGA)4128431684327Coding
11. (TAA)4129585295863Coding
12. (TGA)412100749100760Coding
13. (GAT)412139301139312Coding
14. (CTG)412141893141904Coding
15. (AATC)312146138146149Coding
16. (TGGT)312147927147938Coding
17. (CAA)412160634160645Coding
18. (GAA)412160654160665Coding
19. (GTA)412160690160701Coding
20. (GGT)412185292185303Coding
21. (ACC)412197865197876Coding
22. (ACC)412200437200448Coding
23. (AAG)412221434221445Coding
24. (AGC)515223919223933Coding
25. (ATTA)312269186269197Non coding
26. (ATTT)312297748297759Non coding
27. (TAAA)312329119329130Non coding
28. (AAT)412331265331276Coding
29. (AAAT)312336305336316Coding
30. (ATTT)312418391418402Coding
31. (CAC)618447380447397Coding
32. (GAAG)312449028449039Non coding
33. (AAATC)315449727449741Coding
34. (CATA)312451401451412Coding
35. (CAC)412472638472649Coding
36. (CAAGAA)318486514486531Coding
37. (GGT)412495460495471Coding
38. (ACTC)312501113501124Non coding
39. (CAC)412504439504450Coding
40. (ATTT)312509177509188Non coding
41. (ACATCA)318510138510155Coding
42. (AATT)312550233550244Coding
43. (AG)612562230562241Coding
44. (AGA)412562532562543Coding
45. (AGC)515597335597349Coding
46. (GTG)412611452611463Coding
47. (GGT)412611505611516Coding
48. (GGT)412611520611531Coding
49. (GGT)412611565611576Coding
50. (GGT)515648150648164Coding
51. (CCAA)312683208683219Coding
52. (TTGT)312693136693147Coding
53. (ATTG)312708508708519Coding
54. (TCT)412734984734995Coding
55. (GGTG)312763731763742Coding
56. (ACC)412773411773422Coding
57. (CTG)412775081775092Coding
58. (GGT)412800052800063Coding
59. (CAT)412845052845063Coding
60. (TGC)412920852920863Coding
61. (GATA)312938717938728Non coding
62. (TTG)412957939957950Coding
63. (GCT)41210042871004298Coding
64. (TTATA)31510252601025274Coding
65. (ACA)41210518841051895Non coding
66. (GCT)41210538741053885Coding
67. (GAAG)31210627391062750Non coding
68. (GAA)41210687881068799Coding
69. (TGG)41210725281072539Coding
70. (TTTA)31211202651120276Coding
71. (CAAC)31211393841139395Coding
72. (TTA)41211507011150712Coding
73. (CGCGTT)31811754621175479Non coding
74. (ATTT)31211938901193901Non coding
75. (TGC)61812455761245593Coding
76. (GTT)41212542421254253Coding
77. (CT)61212658881265899Coding
78. (AATAA)31512903471290361Coding
79. (GTTT)31212945451294556Coding
80. (TGC)41213260441326055Coding
81. (TACT)31213429731342984Coding
82. (CATC)31213648981364909Non coding
83. (CTTT)31213893471389358Coding
84. (TAAT)31214027071402718Non coding
85. (CAT)41214221501422161Coding
86. (CCG)61814279151427932Coding
87. (CCA)41214280681428079Coding
88. (CCA)41214281281428139Coding
89. (GGAG)31214320901432101Coding
90. (TTGG)31215231311523142Coding
91. (CAGT)31215365021536513Coding
92. (AAAC)31215397341539745Coding
93. (AGTA)31216314961631507Coding
94. (AATG)31216733851673396Non coding
95. (TAT)41216901291690140Coding
96. (GTT)41217008981700909Coding
97. (TGC)41217060611706072Coding
98. (AGAA)31217133031713314Non coding
99. (GCT)41217581061758117Coding
100. (TTTG)31217705171770528Coding
101. (AAAT)31217762031776214Coding
102. (CAT)41217780341778045Coding
103. (CTTC)31217808581780869Non coding
104. (TTAC)31218257221825733Coding
105. (TTTA)31218539551853966Coding
106. (GAA)41218758761875887Non coding
107. (CCA)41218945791894590Coding
108. (CCA)41218965401896551Coding
109. (AAGA)31219445661944577Non coding
110. (CAA)41219779971978008Coding
111. (TGG)41219957331995744Coding
112. (TATT)31219966381996649Coding
113. (ATT)41220738912073902Coding
114. (GCT)41220749412074952Coding
115. (AAC)41220761632076174Coding
116. (TCT)41220832722083283Coding
117. (CAG)41220967132096724Non coding
118. (ATAA)31221047852104796Coding
119. (GGTT)31221401522140163Coding
120. (TTTA)31221774882177499Coding
121. (AGAA)31222374652237476Non coding
122. (ATT)41223077122307723Coding
123. (TCA)41223323662332377Coding
124. (TTAA)31223357172335728Non coding
125. (AATT)31223451182345129Coding
126. (CCA)41223470402347051Coding
127. (TAAT)31223677712367782Coding-Non coding
128. (CAT)41223863472386358Coding
129. (ATG)41224062972406308Coding
130. (CAC)41224222642422275Non coding
131. (CAA)41224272672427278Coding
132. (CCA)41224546912454702Non coding
133. (AGAC)31224814762481487Non coding
134. (TTTG)31225185862518597Coding
135. (TAAT)31225284752528486Non coding
136. (TAAT)31225306182530629Coding
137. (TAAATA)31825406172540634Non coding
138. (GGT)41225470322547043Coding
139. (TAAA)31225535372553548Non coding
140. (GCA)41225784302578441Coding
141. (CGT)41225861472586158Coding
142. (TGC)41226467332646744Coding
143. (CTG)41226721542672165Coding
144. (CAG)41226764932676504Coding
145. (TTCT)52026932652693284Non coding
146. (GCT)41227319192731930Coding
147. (CTT)41227573442757355Non coding
148. (TTTA)31228428552842866Coding
149. (GAAAAA)31828617762861793Coding
150. (TGGT)31228726512872662Coding
151. (TGTT)31229194012919412Non coding
152. (ATC)51529494742949488Coding
153. (GTG)41229521242952135Coding
154. (CAG)41229809932981004Coding
155. (CAT)41229810182981029Coding
156. (GAA)41230047883004799Coding
157. (ATGA)31230609263060937Non coding
158. (GCA)41230675553067566Coding
159. (TTTA)31230869823086993Coding
160. (TGA)41231082563108267Coding
161. (AGA)41231276493127660Coding
162. (CTT)41231488363148847Coding
163. (ATCA)31231686023168613Coding
164. (AGA)41232213253221336Coding
165. (GCT)41232293763229387Coding
166. (TAAG)31232321103232121Non coding
167. (CAG)41233061153306126Coding
168. (TTGGAA)31833065113306528Coding
169. (TGA)41233241513324162Coding
170. (TGA)41233270883327099Coding
171. (GAT)41233604453360456Coding
172. (GTCTG)31533682393368253Coding
173. (ATCTA)42033824153382434Non coding
174. (CTG)41234149133414924Coding
175. (CCA)41234285403428551Coding
176. (GCT)41235187153518726Coding
177. (TGAT)31235205163520527Coding
178. (TAA)41235216193521630Non coding
179. (AGAA)31235263023526313Non coding
180. (TGTT)31235384603538471Coding
181. (ATAA)31235610903561101Non coding
182. (ATTT)31235651563565167Coding
183. (TGG)51536430413643055Coding
184. (GA)61236828363682847Non coding
185. (TGG)41237012003701211Coding
186. (GAA)72137096923709712Non coding
187. (AGC)41237288983728909Coding
188. (AAAT)31237689843768995Coding
189. (CCA)61837927403792757Coding
190. (AAC)41238092753809286Coding
191. (AATT)31239018883901899Non coding
192. (TTAC)31239081003908111Non coding
193. (ATTA)31239095643909575Non coding
194. (TTAT)31239146953914706Coding
195. (GGT)41240082724008283Coding
196. (CACTAT)31840281464028163Coding
197. (TTAA)31240422774042288Non coding
198. (TCA)41240557034055714Coding
199. (TTA)41240913304091341Coding
200. (CATT)31240951224095133Coding
201. (ACT)41241019164101927Coding
202. (ATC)41241061534106164Coding
203. (TTGG)31241211274121138Coding
204. (TGA)41241273684127379Coding
205. (TAAA)31241785414178552Coding
206. (ATTAAT)31841961824196199Coding
207. (GGT)41242000994200110Coding
208. (TTTA)31242606044260615Coding
209. (TTC)41242734044273415Coding
210. (GAAG)31242761774276188Non coding
211. (CGT)41243030504303061Coding
212. (AGC)41243888254388836Coding
213. (TTTG)31243962814396292Non coding
214. (AAT)41243992274399238Coding-Non coding
215. (TTTG)31244385174438528Coding
216. (TAAAC)31544516924451706Non coding
217. (GTG)41244651294465140Coding
218. (TAA)41244869194486930Coding
219. (ATCTG)31545313094531323Coding
220. (CAG)41245539324553943Coding
221. (CAAC)31245559564555967Coding
222. (TCA)41245717884571799Coding
223. (TAAA)31246192884619299Coding-Non coding
224. (GCT)41246564734656484Coding
225. (ATCT)31246862174686228Non coding
226. (GGAGTT)31847126644712681Coding
227. (TCA)41247219884721999Coding
228. (AACA)31247358834735894Coding
229. (CCA)41247838484783859Coding
230. (AAAG)41647873704787385Non coding
231. (GAA)51547997744799788Non coding
232. (AGATGA)31848427694842786Coding
233. (GGT)41248489914849002Coding
234. (ATT)41248534524853463Coding
235. (AGAA)31248803974880408Non coding
236. (GTA)41248914794891490Coding
237. (TGT)41248957214895732Coding
238. (TCTGCT)31848986884898705Non coding
239. (GCT)41249042954904306Coding
240. (ACA)41249426304942641Coding
241. (CTA)41249473634947374Coding
242. (GAT)41250110765011087Coding
243. (TTC)41250195305019541Coding
244. (ATCT)31250680835068094Non coding
245. (CCG)41250698715069882Coding
246. (AGAT)31250742415074252Non coding
247. (GGGGTT)31850817225081739Non coding
248. (AGTC)31250946425094653Coding
249. (TA)61250956485095659Coding
250. (TATT)31251171775117188Coding
251. (CTG)41251286275128638Coding
252. (CAC)41251308245130835Coding
253. (TTGA)31252001785200189Non coding
254. (ATG)41252008235200834Coding
255. (ATCA)31252114485211459Coding
256. (ATTT)31252308795230890Non coding
257. (AATT)31252408085240819Non coding
258. (TGG)41252450025245013Coding
259. (TGG)41252450385245049Coding
260. (ATC)41252616835261694Coding
261. (TCC)41252688975268908Coding
262. (TCAAA)42053038915303910Non coding
263. (ATC)72153321615332181Coding
264. (TCA)61853321835332200Coding
265. (AAAT)31253380855338096Non coding
266. (GCA)51553819945382008Coding
267. (AGC)41253898455389856Coding
268. (GGATT)31554244265424440Coding
269. (TAAT)31254344025434413Non coding
270. (ATT)41254774785477489Coding
271. (TATT)31255131395513150Coding
272. (CTG)41255707055570716Coding
273. (TTCT)31255745565574567Coding
274. (TTA)41255948655594876Coding
275. (TCG)41256040115604022Coding
276. (GTTG)31256463585646369Coding
277. (TTTAGC)31856487755648792Coding
278. (TTTC)31256523215652332Coding
279. (TGA)41256971405697151Coding
280. (GCAC)31257040315704042Non coding
281. (TGC)41257175675717578Coding
282. (CGG)41257327605732771Coding
283. (GAA)41257604315760442Coding
284. (AATA)31257648295764840Coding
285. (GCA)41257777455777756Coding
286. (AAGT)31257930545793065Coding-Non coding
287. (CAGCCT)31858018315801848Coding
288. (TGCG)31258180685818079Coding
289. (TAA)41258189495818960Coding
290. (TTTGA)42058462145846233Non coding
291. (CTCAA)31558514585851472Coding
292. (GGT)41258565015856512Coding
293. (TTTA)31258699615869972Non coding
294. (GAC)41258788075878818Coding
295. (TTC)41258792315879242Coding
296. (TCT)51558876435887657Coding
297. (ATCA)31258904105890421Coding
298. (AATC)31258948215894832Coding
299. (CAT)41258988155898826Coding
300. (AGC)41259202775920288Coding
301. (TTAT)31259456385945649Non coding
302. (AAT)41259891895989200Coding
303. (GTTTT)31560050356005049Coding
304. (CTTG)31260293706029381Coding
305. (AAG)51560338946033908Coding
306. (GCAA)31260475936047604Coding
307. (TCA)41260955196095530Coding
308. (TTAT)31261547956154806Non coding
309. (AGGACT)31861766136176630Coding
310. (CAG)41261787376178748Coding
311. (AATA)31262299776229988Coding
312. (ACC)41262507866250797Coding
313. (AGAT)31262771666277177Coding
314. (TGC)41262909166290927Coding
315. (AATT)31263245516324562Coding
316. (GCT)41263323246332335Coding
317. (AACT)31263457846345795Non coding
318. (TGC)41263932696393280Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.