CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Anabaena cylindrica PCC 7122 (NC_019771 6395837 bp)                                                               Show Primer       Download
Compound : 2     Perfect Compound : 1   Overlapping Compound : 1
Perfect      : 318     Density of SSR      : 1SSR/ 19.99 kb   Average length of SSR  : 12.96 bp
Coding      : 249     Non-Coding           : 67   Coding and Non-Coding : 4
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 4 172 113 14 15 318
IMPERFECT 0 218 2428 1743 173 184 4746
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (ATT)41242474258Coding
2. (TTG)4121041110422Coding
3. (AAG)4121483914850Coding
4. (GAA)4122383923850Coding
5. (TCG)4123112531136Coding
6. (GAA)4125627556286Non coding
7. (GAA)4125631456325Non coding
8. (TGA)4128431684327Coding
9. (TAA)4129585295863Coding
10. (TGA)412100749100760Coding
11. (GAT)412139301139312Coding
12. (CTG)412141893141904Coding
13. (CAA)412160634160645Coding
14. (GAA)412160654160665Coding
15. (GTA)412160690160701Coding
16. (GGT)412185292185303Coding
17. (ACC)412197865197876Coding
18. (ACC)412200437200448Coding
19. (AAG)412221434221445Coding
20. (AGC)515223919223933Coding
21. (AAT)412331265331276Coding
22. (CAC)618447380447397Coding
23. (CAC)412472638472649Coding
24. (GGT)412495460495471Coding
25. (CAC)412504439504450Coding
26. (AGA)412562532562543Coding
27. (AGC)515597335597349Coding
28. (GTG)412611452611463Coding
29. (GGT)412611505611516Coding
30. (GGT)412611520611531Coding
31. (GGT)412611565611576Coding
32. (GGT)515648150648164Coding
33. (TCT)412734984734995Coding
34. (ACC)412773411773422Coding
35. (CTG)412775081775092Coding
36. (GGT)412800052800063Coding
37. (CAT)412845052845063Coding
38. (TGC)412920852920863Coding
39. (TTG)412957939957950Coding
40. (GCT)41210042871004298Coding
41. (ACA)41210518841051895Non coding
42. (GCT)41210538741053885Coding
43. (GAA)41210687881068799Coding
44. (TGG)41210725281072539Coding
45. (TTA)41211507011150712Coding
46. (TGC)61812455761245593Coding
47. (GTT)41212542421254253Coding
48. (TGC)41213260441326055Coding
49. (CAT)41214221501422161Coding
50. (CCG)61814279151427932Coding
51. (CCA)41214280681428079Coding
52. (CCA)41214281281428139Coding
53. (TAT)41216901291690140Coding
54. (GTT)41217008981700909Coding
55. (TGC)41217060611706072Coding
56. (GCT)41217581061758117Coding
57. (CAT)41217780341778045Coding
58. (GAA)41218758761875887Non coding
59. (CCA)41218945791894590Coding
60. (CCA)41218965401896551Coding
61. (CAA)41219779971978008Coding
62. (TGG)41219957331995744Coding
63. (ATT)41220738912073902Coding
64. (GCT)41220749412074952Coding
65. (AAC)41220761632076174Coding
66. (TCT)41220832722083283Coding
67. (CAG)41220967132096724Non coding
68. (ATT)41223077122307723Coding
69. (TCA)41223323662332377Coding
70. (CCA)41223470402347051Coding
71. (CAT)41223863472386358Coding
72. (ATG)41224062972406308Coding
73. (CAC)41224222642422275Non coding
74. (CAA)41224272672427278Coding
75. (CCA)41224546912454702Non coding
76. (GGT)41225470322547043Coding
77. (GCA)41225784302578441Coding
78. (CGT)41225861472586158Coding
79. (TGC)41226467332646744Coding
80. (CTG)41226721542672165Coding
81. (CAG)41226764932676504Coding
82. (GCT)41227319192731930Coding
83. (CTT)41227573442757355Non coding
84. (ATC)51529494742949488Coding
85. (GTG)41229521242952135Coding
86. (CAG)41229809932981004Coding
87. (CAT)41229810182981029Coding
88. (GAA)41230047883004799Coding
89. (GCA)41230675553067566Coding
90. (TGA)41231082563108267Coding
91. (AGA)41231276493127660Coding
92. (CTT)41231488363148847Coding
93. (AGA)41232213253221336Coding
94. (GCT)41232293763229387Coding
95. (CAG)41233061153306126Coding
96. (TGA)41233241513324162Coding
97. (TGA)41233270883327099Coding
98. (GAT)41233604453360456Coding
99. (CTG)41234149133414924Coding
100. (CCA)41234285403428551Coding
101. (GCT)41235187153518726Coding
102. (TAA)41235216193521630Non coding
103. (TGG)51536430413643055Coding
104. (TGG)41237012003701211Coding
105. (GAA)72137096923709712Non coding
106. (AGC)41237288983728909Coding
107. (CCA)61837927403792757Coding
108. (AAC)41238092753809286Coding
109. (GGT)41240082724008283Coding
110. (TCA)41240557034055714Coding
111. (TTA)41240913304091341Coding
112. (ACT)41241019164101927Coding
113. (ATC)41241061534106164Coding
114. (TGA)41241273684127379Coding
115. (GGT)41242000994200110Coding
116. (TTC)41242734044273415Coding
117. (CGT)41243030504303061Coding
118. (AGC)41243888254388836Coding
119. (AAT)41243992274399238Coding-Non coding
120. (GTG)41244651294465140Coding
121. (TAA)41244869194486930Coding
122. (CAG)41245539324553943Coding
123. (TCA)41245717884571799Coding
124. (GCT)41246564734656484Coding
125. (TCA)41247219884721999Coding
126. (CCA)41247838484783859Coding
127. (GAA)51547997744799788Non coding
128. (GGT)41248489914849002Coding
129. (ATT)41248534524853463Coding
130. (GTA)41248914794891490Coding
131. (TGT)41248957214895732Coding
132. (GCT)41249042954904306Coding
133. (ACA)41249426304942641Coding
134. (CTA)41249473634947374Coding
135. (GAT)41250110765011087Coding
136. (TTC)41250195305019541Coding
137. (CCG)41250698715069882Coding
138. (CTG)41251286275128638Coding
139. (CAC)41251308245130835Coding
140. (ATG)41252008235200834Coding
141. (TGG)41252450025245013Coding
142. (TGG)41252450385245049Coding
143. (ATC)41252616835261694Coding
144. (TCC)41252688975268908Coding
145. (ATC)72153321615332181Coding
146. (TCA)61853321835332200Coding
147. (GCA)51553819945382008Coding
148. (AGC)41253898455389856Coding
149. (ATT)41254774785477489Coding
150. (CTG)41255707055570716Coding
151. (TTA)41255948655594876Coding
152. (TCG)41256040115604022Coding
153. (TGA)41256971405697151Coding
154. (TGC)41257175675717578Coding
155. (CGG)41257327605732771Coding
156. (GAA)41257604315760442Coding
157. (GCA)41257777455777756Coding
158. (TAA)41258189495818960Coding
159. (GGT)41258565015856512Coding
160. (GAC)41258788075878818Coding
161. (TTC)41258792315879242Coding
162. (TCT)51558876435887657Coding
163. (CAT)41258988155898826Coding
164. (AGC)41259202775920288Coding
165. (AAT)41259891895989200Coding
166. (AAG)51560338946033908Coding
167. (TCA)41260955196095530Coding
168. (CAG)41261787376178748Coding
169. (ACC)41262507866250797Coding
170. (TGC)41262909166290927Coding
171. (GCT)41263323246332335Coding
172. (TGC)41263932696393280Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.