CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Anabaena cylindrica PCC 7122 (NC_019771 6395837 bp)                                                               Show Primer       Download
Compound : 2     Perfect Compound : 1   Overlapping Compound : 1
Perfect      : 318     Density of SSR      : 1SSR/ 19.99 kb   Average length of SSR  : 12.96 bp
Coding      : 249     Non-Coding           : 67   Coding and Non-Coding : 4
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 4 172 113 14 15 318
IMPERFECT 0 218 2428 1743 173 184 4746
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (AATC)312146138146149Coding
2. (TGGT)312147927147938Coding
3. (ATTA)312269186269197Non coding
4. (ATTT)312297748297759Non coding
5. (TAAA)312329119329130Non coding
6. (AAAT)312336305336316Coding
7. (ATTT)312418391418402Coding
8. (GAAG)312449028449039Non coding
9. (CATA)312451401451412Coding
10. (ACTC)312501113501124Non coding
11. (ATTT)312509177509188Non coding
12. (AATT)312550233550244Coding
13. (CCAA)312683208683219Coding
14. (TTGT)312693136693147Coding
15. (ATTG)312708508708519Coding
16. (GGTG)312763731763742Coding
17. (GATA)312938717938728Non coding
18. (GAAG)31210627391062750Non coding
19. (TTTA)31211202651120276Coding
20. (CAAC)31211393841139395Coding
21. (ATTT)31211938901193901Non coding
22. (GTTT)31212945451294556Coding
23. (TACT)31213429731342984Coding
24. (CATC)31213648981364909Non coding
25. (CTTT)31213893471389358Coding
26. (TAAT)31214027071402718Non coding
27. (GGAG)31214320901432101Coding
28. (TTGG)31215231311523142Coding
29. (CAGT)31215365021536513Coding
30. (AAAC)31215397341539745Coding
31. (AGTA)31216314961631507Coding
32. (AATG)31216733851673396Non coding
33. (AGAA)31217133031713314Non coding
34. (TTTG)31217705171770528Coding
35. (AAAT)31217762031776214Coding
36. (CTTC)31217808581780869Non coding
37. (TTAC)31218257221825733Coding
38. (TTTA)31218539551853966Coding
39. (AAGA)31219445661944577Non coding
40. (TATT)31219966381996649Coding
41. (ATAA)31221047852104796Coding
42. (GGTT)31221401522140163Coding
43. (TTTA)31221774882177499Coding
44. (AGAA)31222374652237476Non coding
45. (TTAA)31223357172335728Non coding
46. (AATT)31223451182345129Coding
47. (TAAT)31223677712367782Coding-Non coding
48. (AGAC)31224814762481487Non coding
49. (TTTG)31225185862518597Coding
50. (TAAT)31225284752528486Non coding
51. (TAAT)31225306182530629Coding
52. (TAAA)31225535372553548Non coding
53. (TTCT)52026932652693284Non coding
54. (TTTA)31228428552842866Coding
55. (TGGT)31228726512872662Coding
56. (TGTT)31229194012919412Non coding
57. (ATGA)31230609263060937Non coding
58. (TTTA)31230869823086993Coding
59. (ATCA)31231686023168613Coding
60. (TAAG)31232321103232121Non coding
61. (TGAT)31235205163520527Coding
62. (AGAA)31235263023526313Non coding
63. (TGTT)31235384603538471Coding
64. (ATAA)31235610903561101Non coding
65. (ATTT)31235651563565167Coding
66. (AAAT)31237689843768995Coding
67. (AATT)31239018883901899Non coding
68. (TTAC)31239081003908111Non coding
69. (ATTA)31239095643909575Non coding
70. (TTAT)31239146953914706Coding
71. (TTAA)31240422774042288Non coding
72. (CATT)31240951224095133Coding
73. (TTGG)31241211274121138Coding
74. (TAAA)31241785414178552Coding
75. (TTTA)31242606044260615Coding
76. (GAAG)31242761774276188Non coding
77. (TTTG)31243962814396292Non coding
78. (TTTG)31244385174438528Coding
79. (CAAC)31245559564555967Coding
80. (TAAA)31246192884619299Coding-Non coding
81. (ATCT)31246862174686228Non coding
82. (AACA)31247358834735894Coding
83. (AAAG)41647873704787385Non coding
84. (AGAA)31248803974880408Non coding
85. (ATCT)31250680835068094Non coding
86. (AGAT)31250742415074252Non coding
87. (AGTC)31250946425094653Coding
88. (TATT)31251171775117188Coding
89. (TTGA)31252001785200189Non coding
90. (ATCA)31252114485211459Coding
91. (ATTT)31252308795230890Non coding
92. (AATT)31252408085240819Non coding
93. (AAAT)31253380855338096Non coding
94. (TAAT)31254344025434413Non coding
95. (TATT)31255131395513150Coding
96. (TTCT)31255745565574567Coding
97. (GTTG)31256463585646369Coding
98. (TTTC)31256523215652332Coding
99. (GCAC)31257040315704042Non coding
100. (AATA)31257648295764840Coding
101. (AAGT)31257930545793065Coding-Non coding
102. (TGCG)31258180685818079Coding
103. (TTTA)31258699615869972Non coding
104. (ATCA)31258904105890421Coding
105. (AATC)31258948215894832Coding
106. (TTAT)31259456385945649Non coding
107. (CTTG)31260293706029381Coding
108. (GCAA)31260475936047604Coding
109. (TTAT)31261547956154806Non coding
110. (AATA)31262299776229988Coding
111. (AGAT)31262771666277177Coding
112. (AATT)31263245516324562Coding
113. (AACT)31263457846345795Non coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.