CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Anabaena sp. 90 (NC_019427 4329265 bp)                                                               Show Primer       Download
Compound : 1     Perfect Compound : 0   Overlapping Compound : 1
Perfect      : 257     Density of SSR      : 1SSR/ 16.78 kb   Average length of SSR  : 13.5 bp
Coding      : 190     Non-Coding           : 61   Coding and Non-Coding : 7
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 3 136 93 8 17 257
IMPERFECT 4 132 1675 1289 145 129 3374
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (AACT)3121222612237Coding
2. (TTC)4122325523266Non coding
3. (TTCT)5202329123310Non coding
4. (TTTAT)4206068560704Non coding
5. (GAA)8246974569768Coding
6. (TTCT)312106059106070Non coding
7. (CCG)412136494136505Coding
8. (CCG)412136518136529Coding
9. (ACC)412136544136555Coding
10. (AT)1224139365139388Non coding
11. (ACC)412149674149685Coding
12. (TAAA)312162196162207Coding
13. (TTA)412162285162296Coding
14. (AAAT)312167668167679Coding
15. (TTG)412177681177692Coding
16. (GGT)412178349178360Coding
17. (TTGT)312198649198660Coding
18. (AATA)312215017215028Coding
19. (TAT)412255861255872Coding
20. (CAG)412264399264410Coding
21. (CAT)412277528277539Coding
22. (ACAA)312347265347276Coding
23. (CAGC)312371095371106Coding
24. (CAA)412377022377033Coding
25. (GCA)412394487394498Non coding
26. (AAACA)315401477401491Coding
27. (AATA)312403951403962Coding
28. (GAA)412423738423749Coding
29. (ATTT)312425196425207Non coding
30. (TAAG)312425271425282Non coding
31. (TAAC)312427282427293Coding-Non coding
32. (CTTC)416455006455021Coding
33. (TTA)412456851456862Non coding
34. (CTTC)312487706487717Non coding
35. (AAT)412491409491420Coding
36. (ATCT)312502497502508Coding
37. (TATTT)315509150509164Non coding
38. (TAA)412522253522264Coding
39. (AAC)412556517556528Coding
40. (ATTA)312578866578877Non coding
41. (AAT)412594957594968Coding
42. (TGAT)312603390603401Coding
43. (TTA)412610622610633Coding
44. (TGAT)312644616644627Coding
45. (GCA)412652289652300Coding
46. (TTTA)312663430663441Coding-Non coding
47. (ACC)515707764707778Coding
48. (AAGA)312712129712140Non coding
49. (GTG)618769305769322Coding
50. (TGC)412810504810515Coding
51. (TCG)618847820847837Coding
52. (TGAT)312847899847910Non coding
53. (GTAG)312847922847933Non coding
54. (TACT)312848019848030Non coding
55. (TAATCC)318888314888331Coding
56. (ACC)412890015890026Coding
57. (AAGA)312917107917118Coding
58. (TTC)412922680922691Coding
59. (CTG)412932932932943Coding
60. (CTG)412933730933741Coding
61. (GCT)412934236934247Coding
62. (AAAT)312940458940469Coding
63. (TGG)412968922968933Coding
64. (AATT)312969986969997Non coding
65. (GTT)927996591996617Coding
66. (CAG)41210281681028179Coding
67. (TTTCTC)31810292391029256Coding
68. (GATA)31210690531069064Coding
69. (CCG)41210690921069103Coding
70. (CAGAAG)31811172661117283Coding
71. (AGAAG)31511323211132335Non coding
72. (CAAT)31211595131159524Coding
73. (ATC)41211662911166302Coding
74. (CTTTTT)31811933551193372Non coding
75. (TTTTG)31511959901196004Coding
76. (GATT)31211998411199852Coding
77. (GCA)41212055761205587Coding
78. (AGA)41212290601229071Coding
79. (AGT)41212291651229176Coding
80. (TCT)41212553281255339Non coding
81. (CCA)41212579801257991Coding
82. (ATC)41212885561288567Coding
83. (GCAA)31213693351369346Coding
84. (CAC)41214054841405495Coding
85. (TGG)41214150261415037Coding
86. (GTTT)31214387961438807Coding
87. (GAAA)52014664831466502Non coding
88. (GAA)72114665141466534Non coding
89. (TTG)41214751811475192Coding
90. (AACA)31215141001514111Coding
91. (TGC)51515270091527023Coding
92. (ATG)41215294051529416Coding
93. (CACC)31215496901549701Coding
94. (CATGAA)53015527441552773Coding
95. (ATTA)31215967191596730Coding-Non coding
96. (GCT)41216103131610324Coding
97. (AGGTAA)31816237841623801Coding
98. (GAA)103016403291640358Non coding
99. (ATTT)31216479001647911Coding
100. (CTTC)31216628141662825Non coding
101. (GTT)41216888671688878Coding
102. (AGC)51516900521690066Coding
103. (AAC)51517200901720104Coding
104. (AAAC)31217228241722835Coding
105. (CTG)41217382231738234Coding
106. (AAT)41217438631743874Coding
107. (AATT)31217489261748937Coding
108. (AAT)41217531441753155Coding
109. (TGCT)31217547161754727Coding
110. (GTG)41217631811763192Coding
111. (TGT)41218092171809228Non coding
112. (GCA)41218138111813822Coding
113. (TTTCC)31518541981854212Coding
114. (TGG)41218656711865682Coding
115. (AAAT)31219152901915301Non coding
116. (GCT)41219269541926965Coding
117. (TTTA)31219617731961784Non coding
118. (AGAA)31220045692004580Coding
119. (AGGAAG)42420046032004626Coding
120. (GCA)51520159722015986Coding
121. (TTC)72120438822043902Non coding
122. (CTT)41220871442087155Coding
123. (CTT)41220947632094774Coding
124. (AGC)41221125782112589Coding
125. (GAAA)31221222212122232Coding
126. (ATAA)31221998922199903Coding
127. (AGA)41222073482207359Coding
128. (ATAA)31222141302214141Coding
129. (TAAT)31222203822220393Non coding
130. (TAAT)31222204502220461Non coding
131. (TAAT)31222205182220529Non coding
132. (TAAT)31222205862220597Non coding
133. (TAAT)31222206362220647Non coding
134. (TTAT)31222258612225872Non coding
135. (TTTG)31222269982227009Coding
136. (AAATAA)31822313612231378Coding
137. (CCA)41222882922288303Coding
138. (GTAT)41622902742290289Non coding
139. (CAT)41223253612325372Coding
140. (TCG)41223274702327481Coding
141. (AGT)41223283072328318Coding
142. (TAA)41223879702387981Coding
143. (GGT)51524142132414227Coding
144. (GTG)51524143042414318Coding
145. (GTG)41224143222414333Coding
146. (GGT)41224243312424342Coding
147. (TTACCG)42424310692431092Coding
148. (CCATTG)31824310962431113Coding
149. (AAAT)31224652882465299Coding
150. (TTC)41225014602501471Non coding
151. (CTGTTG)42425308402530863Coding
152. (TTTA)31225579482557959Non coding
153. (CTGGGG)31825888272588844Coding
154. (CTG)41226089682608979Coding
155. (AAT)41226119232611934Non coding
156. (TGT)41226129522612963Coding
157. (AAGA)31226570012657012Coding
158. (CAG)41226630942663105Coding
159. (GTA)41227104972710508Coding
160. (TAA)41227447882744799Coding
161. (AAT)41227524732752484Coding
162. (ATAA)31227565292756540Coding-Non coding
163. (AAGT)31227568782756889Non coding
164. (CTG)41227717392771750Non coding
165. (CAG)41227759622775973Coding
166. (TGGTG)31528057322805746Non coding
167. (GGT)41228211952821206Coding
168. (TTTC)31228303452830356Non coding
169. (ACC)41228843122884323Coding
170. (TGC)41228964352896446Coding
171. (GTT)41229221292922140Coding
172. (TTGT)31230141083014119Coding
173. (AATT)31230354723035483Coding
174. (AGC)41230433233043334Coding
175. (TGTT)31230503943050405Coding
176. (GAA)51530512693051283Coding
177. (ACG)41230641093064120Coding
178. (CCA)41230767333076744Coding
179. (GGT)41231038053103816Coding
180. (AGGAAT)31831109203110937Coding
181. (CAC)41231134683113479Coding
182. (ACTG)31231146093114620Coding
183. (AATT)31231212483121259Coding
184. (TAG)41231361533136164Coding
185. (ACC)41231493323149343Coding
186. (GAA)41231511443151155Coding
187. (ATT)72131725493172569Coding
188. (GATT)31231914263191437Non coding
189. (TA)61231979063197917Non coding
190. (AAGA)62432096673209690Non coding
191. (AATA)31232358273235838Coding
192. (AATT)31232454243245435Coding-Non coding
193. (AATG)31232496173249628Coding-Non coding
194. (CAT)41232538713253882Coding
195. (AAT)72132649093264929Non coding
196. (CCT)41232920763292087Coding
197. (CTGG)31232997173299728Coding
198. (AACA)31233023833302394Coding
199. (TGG)41233076633307674Coding
200. (GGT)41233080783308089Coding
201. (TGG)41233082153308226Coding
202. (GAC)41233208683320879Coding
203. (TCA)41233291533329164Coding
204. (CATT)31233347163334727Coding
205. (GA)61233396893339700Coding
206. (ATCTAA)31833404003340417Coding
207. (CATT)31233429523342963Coding
208. (TCAG)31233510723351083Coding
209. (CACC)31233533063353317Coding
210. (TTCT)62433640253364048Non coding
211. (ATT)41233882053388216Coding
212. (AAAT)31234315433431554Coding
213. (AGC)51534365383436552Coding
214. (AAAACT)31834683333468350Coding
215. (TTGA)31234719033471914Coding
216. (AATT)31234912823491293Coding
217. (TAT)41235154983515509Non coding
218. (GAT)41235504593550470Coding
219. (GAAG)31236010253601036Non coding
220. (GCG)41236243613624372Coding
221. (TTTC)31236338273633838Non coding
222. (CCA)41236635493663560Coding
223. (TAAA)31236655483665559Coding
224. (GCT)41236860143686025Coding
225. (GCC)41236872653687276Coding
226. (TAAA)31236950283695039Non coding
227. (TAT)51537306723730686Coding
228. (AGC)41237356273735638Coding
229. (GCA)41237393483739359Coding
230. (GAC)41237442143744225Coding
231. (TGG)41237666933766704Coding
232. (TACA)31238222483822259Coding
233. (CTG)41238325853832596Coding
234. (AGGATT)31838341753834192Coding
235. (AAGA)31239222303922241Coding
236. (TGC)41239741413974152Coding
237. (TAAA)52040313694031388Non coding
238. (GGGGAA)31840670104067027Coding
239. (GAAG)41640730564073071Non coding
240. (CTT)41240773764077387Non coding
241. (ACC)41240814514081462Coding
242. (AAC)41241012314101242Coding
243. (GAA)41241447324144743Non coding
244. (ACC)41241452764145287Coding
245. (ACC)51541583434158357Coding
246. (ATTA)31241974344197445Coding
247. (TTC)41241994694199480Non coding
248. (TGT)41242169294216940Coding
249. (GTT)41242175364217547Coding
250. (TGT)41242384254238436Non coding
251. (GCT)41242488504248861Coding
252. (AAATT)31542545134254527Non coding
253. (ATC)41242659564265967Non coding
254. (TGG)41242937834293794Coding
255. (TAAA)31243107014310712Coding
256. (AATT)31243160094316020Coding-Non coding
257. (TTTA)31243218754321886Non coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.