CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Anabaena sp. 90 (NC_019427 4329265 bp)                                                               Show Primer       Download
Compound : 1     Perfect Compound : 0   Overlapping Compound : 1
Perfect      : 257     Density of SSR      : 1SSR/ 16.78 kb   Average length of SSR  : 13.5 bp
Coding      : 190     Non-Coding           : 61   Coding and Non-Coding : 7
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 3 136 93 8 17 257
IMPERFECT 4 132 1675 1289 145 129 3374
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (TTC)4122325523266Non coding
2. (GAA)8246974569768Coding
3. (CCG)412136494136505Coding
4. (CCG)412136518136529Coding
5. (ACC)412136544136555Coding
6. (ACC)412149674149685Coding
7. (TTA)412162285162296Coding
8. (TTG)412177681177692Coding
9. (GGT)412178349178360Coding
10. (TAT)412255861255872Coding
11. (CAG)412264399264410Coding
12. (CAT)412277528277539Coding
13. (CAA)412377022377033Coding
14. (GCA)412394487394498Non coding
15. (GAA)412423738423749Coding
16. (TTA)412456851456862Non coding
17. (AAT)412491409491420Coding
18. (TAA)412522253522264Coding
19. (AAC)412556517556528Coding
20. (AAT)412594957594968Coding
21. (TTA)412610622610633Coding
22. (GCA)412652289652300Coding
23. (ACC)515707764707778Coding
24. (GTG)618769305769322Coding
25. (TGC)412810504810515Coding
26. (TCG)618847820847837Coding
27. (ACC)412890015890026Coding
28. (TTC)412922680922691Coding
29. (CTG)412932932932943Coding
30. (CTG)412933730933741Coding
31. (GCT)412934236934247Coding
32. (TGG)412968922968933Coding
33. (GTT)927996591996617Coding
34. (CAG)41210281681028179Coding
35. (CCG)41210690921069103Coding
36. (ATC)41211662911166302Coding
37. (GCA)41212055761205587Coding
38. (AGA)41212290601229071Coding
39. (AGT)41212291651229176Coding
40. (TCT)41212553281255339Non coding
41. (CCA)41212579801257991Coding
42. (ATC)41212885561288567Coding
43. (CAC)41214054841405495Coding
44. (TGG)41214150261415037Coding
45. (GAA)72114665141466534Non coding
46. (TTG)41214751811475192Coding
47. (TGC)51515270091527023Coding
48. (ATG)41215294051529416Coding
49. (GCT)41216103131610324Coding
50. (GAA)103016403291640358Non coding
51. (GTT)41216888671688878Coding
52. (AGC)51516900521690066Coding
53. (AAC)51517200901720104Coding
54. (CTG)41217382231738234Coding
55. (AAT)41217438631743874Coding
56. (AAT)41217531441753155Coding
57. (GTG)41217631811763192Coding
58. (TGT)41218092171809228Non coding
59. (GCA)41218138111813822Coding
60. (TGG)41218656711865682Coding
61. (GCT)41219269541926965Coding
62. (GCA)51520159722015986Coding
63. (TTC)72120438822043902Non coding
64. (CTT)41220871442087155Coding
65. (CTT)41220947632094774Coding
66. (AGC)41221125782112589Coding
67. (AGA)41222073482207359Coding
68. (CCA)41222882922288303Coding
69. (CAT)41223253612325372Coding
70. (TCG)41223274702327481Coding
71. (AGT)41223283072328318Coding
72. (TAA)41223879702387981Coding
73. (GGT)51524142132414227Coding
74. (GTG)51524143042414318Coding
75. (GTG)41224143222414333Coding
76. (GGT)41224243312424342Coding
77. (TTC)41225014602501471Non coding
78. (CTG)41226089682608979Coding
79. (AAT)41226119232611934Non coding
80. (TGT)41226129522612963Coding
81. (CAG)41226630942663105Coding
82. (GTA)41227104972710508Coding
83. (TAA)41227447882744799Coding
84. (AAT)41227524732752484Coding
85. (CTG)41227717392771750Non coding
86. (CAG)41227759622775973Coding
87. (GGT)41228211952821206Coding
88. (ACC)41228843122884323Coding
89. (TGC)41228964352896446Coding
90. (GTT)41229221292922140Coding
91. (AGC)41230433233043334Coding
92. (GAA)51530512693051283Coding
93. (ACG)41230641093064120Coding
94. (CCA)41230767333076744Coding
95. (GGT)41231038053103816Coding
96. (CAC)41231134683113479Coding
97. (TAG)41231361533136164Coding
98. (ACC)41231493323149343Coding
99. (GAA)41231511443151155Coding
100. (ATT)72131725493172569Coding
101. (CAT)41232538713253882Coding
102. (AAT)72132649093264929Non coding
103. (CCT)41232920763292087Coding
104. (TGG)41233076633307674Coding
105. (GGT)41233080783308089Coding
106. (TGG)41233082153308226Coding
107. (GAC)41233208683320879Coding
108. (TCA)41233291533329164Coding
109. (ATT)41233882053388216Coding
110. (AGC)51534365383436552Coding
111. (TAT)41235154983515509Non coding
112. (GAT)41235504593550470Coding
113. (GCG)41236243613624372Coding
114. (CCA)41236635493663560Coding
115. (GCT)41236860143686025Coding
116. (GCC)41236872653687276Coding
117. (TAT)51537306723730686Coding
118. (AGC)41237356273735638Coding
119. (GCA)41237393483739359Coding
120. (GAC)41237442143744225Coding
121. (TGG)41237666933766704Coding
122. (CTG)41238325853832596Coding
123. (TGC)41239741413974152Coding
124. (CTT)41240773764077387Non coding
125. (ACC)41240814514081462Coding
126. (AAC)41241012314101242Coding
127. (GAA)41241447324144743Non coding
128. (ACC)41241452764145287Coding
129. (ACC)51541583434158357Coding
130. (TTC)41241994694199480Non coding
131. (TGT)41242169294216940Coding
132. (GTT)41242175364217547Coding
133. (TGT)41242384254238436Non coding
134. (GCT)41242488504248861Coding
135. (ATC)41242659564265967Non coding
136. (TGG)41242937834293794Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.