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Organism:
Anabaena sp. 90
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(NC_019427 , 4329265 bp)
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Show Primer
Download
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Compound
:
1
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Perfect Compound
:
0
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Overlapping Compound
:
1
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Perfect
:
257
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Density of SSR
:
1SSR/
16.78
kb
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Average length of SSR
:
13.5
bp
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Coding
:
190
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Non-Coding
:
61
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Coding and Non-Coding
:
7
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Perfect SSRs
S. No. | MOTIF | LENGTH | START | END | REGION |
1.
| (AACT)3 | 12 | 12226 | 12237 | Coding |
2.
| (TTCT)5 | 20 | 23291 | 23310 | Non coding |
3.
| (TTCT)3 | 12 | 106059 | 106070 | Non coding |
4.
| (TAAA)3 | 12 | 162196 | 162207 | Coding |
5.
| (AAAT)3 | 12 | 167668 | 167679 | Coding |
6.
| (TTGT)3 | 12 | 198649 | 198660 | Coding |
7.
| (AATA)3 | 12 | 215017 | 215028 | Coding |
8.
| (ACAA)3 | 12 | 347265 | 347276 | Coding |
9.
| (CAGC)3 | 12 | 371095 | 371106 | Coding |
10.
| (AATA)3 | 12 | 403951 | 403962 | Coding |
11.
| (ATTT)3 | 12 | 425196 | 425207 | Non coding |
12.
| (TAAG)3 | 12 | 425271 | 425282 | Non coding |
13.
| (TAAC)3 | 12 | 427282 | 427293 | Coding-Non coding |
14.
| (CTTC)4 | 16 | 455006 | 455021 | Coding |
15.
| (CTTC)3 | 12 | 487706 | 487717 | Non coding |
16.
| (ATCT)3 | 12 | 502497 | 502508 | Coding |
17.
| (ATTA)3 | 12 | 578866 | 578877 | Non coding |
18.
| (TGAT)3 | 12 | 603390 | 603401 | Coding |
19.
| (TGAT)3 | 12 | 644616 | 644627 | Coding |
20.
| (TTTA)3 | 12 | 663430 | 663441 | Coding-Non coding |
21.
| (AAGA)3 | 12 | 712129 | 712140 | Non coding |
22.
| (TGAT)3 | 12 | 847899 | 847910 | Non coding |
23.
| (GTAG)3 | 12 | 847922 | 847933 | Non coding |
24.
| (TACT)3 | 12 | 848019 | 848030 | Non coding |
25.
| (AAGA)3 | 12 | 917107 | 917118 | Coding |
26.
| (AAAT)3 | 12 | 940458 | 940469 | Coding |
27.
| (AATT)3 | 12 | 969986 | 969997 | Non coding |
28.
| (GATA)3 | 12 | 1069053 | 1069064 | Coding |
29.
| (CAAT)3 | 12 | 1159513 | 1159524 | Coding |
30.
| (GATT)3 | 12 | 1199841 | 1199852 | Coding |
31.
| (GCAA)3 | 12 | 1369335 | 1369346 | Coding |
32.
| (GTTT)3 | 12 | 1438796 | 1438807 | Coding |
33.
| (GAAA)5 | 20 | 1466483 | 1466502 | Non coding |
34.
| (AACA)3 | 12 | 1514100 | 1514111 | Coding |
35.
| (CACC)3 | 12 | 1549690 | 1549701 | Coding |
36.
| (ATTA)3 | 12 | 1596719 | 1596730 | Coding-Non coding |
37.
| (ATTT)3 | 12 | 1647900 | 1647911 | Coding |
38.
| (CTTC)3 | 12 | 1662814 | 1662825 | Non coding |
39.
| (AAAC)3 | 12 | 1722824 | 1722835 | Coding |
40.
| (AATT)3 | 12 | 1748926 | 1748937 | Coding |
41.
| (TGCT)3 | 12 | 1754716 | 1754727 | Coding |
42.
| (AAAT)3 | 12 | 1915290 | 1915301 | Non coding |
43.
| (TTTA)3 | 12 | 1961773 | 1961784 | Non coding |
44.
| (AGAA)3 | 12 | 2004569 | 2004580 | Coding |
45.
| (GAAA)3 | 12 | 2122221 | 2122232 | Coding |
46.
| (ATAA)3 | 12 | 2199892 | 2199903 | Coding |
47.
| (ATAA)3 | 12 | 2214130 | 2214141 | Coding |
48.
| (TAAT)3 | 12 | 2220382 | 2220393 | Non coding |
49.
| (TAAT)3 | 12 | 2220450 | 2220461 | Non coding |
50.
| (TAAT)3 | 12 | 2220518 | 2220529 | Non coding |
51.
| (TAAT)3 | 12 | 2220586 | 2220597 | Non coding |
52.
| (TAAT)3 | 12 | 2220636 | 2220647 | Non coding |
53.
| (TTAT)3 | 12 | 2225861 | 2225872 | Non coding |
54.
| (TTTG)3 | 12 | 2226998 | 2227009 | Coding |
55.
| (GTAT)4 | 16 | 2290274 | 2290289 | Non coding |
56.
| (AAAT)3 | 12 | 2465288 | 2465299 | Coding |
57.
| (TTTA)3 | 12 | 2557948 | 2557959 | Non coding |
58.
| (AAGA)3 | 12 | 2657001 | 2657012 | Coding |
59.
| (ATAA)3 | 12 | 2756529 | 2756540 | Coding-Non coding |
60.
| (AAGT)3 | 12 | 2756878 | 2756889 | Non coding |
61.
| (TTTC)3 | 12 | 2830345 | 2830356 | Non coding |
62.
| (TTGT)3 | 12 | 3014108 | 3014119 | Coding |
63.
| (AATT)3 | 12 | 3035472 | 3035483 | Coding |
64.
| (TGTT)3 | 12 | 3050394 | 3050405 | Coding |
65.
| (ACTG)3 | 12 | 3114609 | 3114620 | Coding |
66.
| (AATT)3 | 12 | 3121248 | 3121259 | Coding |
67.
| (GATT)3 | 12 | 3191426 | 3191437 | Non coding |
68.
| (AAGA)6 | 24 | 3209667 | 3209690 | Non coding |
69.
| (AATA)3 | 12 | 3235827 | 3235838 | Coding |
70.
| (AATT)3 | 12 | 3245424 | 3245435 | Coding-Non coding |
71.
| (AATG)3 | 12 | 3249617 | 3249628 | Coding-Non coding |
72.
| (CTGG)3 | 12 | 3299717 | 3299728 | Coding |
73.
| (AACA)3 | 12 | 3302383 | 3302394 | Coding |
74.
| (CATT)3 | 12 | 3334716 | 3334727 | Coding |
75.
| (CATT)3 | 12 | 3342952 | 3342963 | Coding |
76.
| (TCAG)3 | 12 | 3351072 | 3351083 | Coding |
77.
| (CACC)3 | 12 | 3353306 | 3353317 | Coding |
78.
| (TTCT)6 | 24 | 3364025 | 3364048 | Non coding |
79.
| (AAAT)3 | 12 | 3431543 | 3431554 | Coding |
80.
| (TTGA)3 | 12 | 3471903 | 3471914 | Coding |
81.
| (AATT)3 | 12 | 3491282 | 3491293 | Coding |
82.
| (GAAG)3 | 12 | 3601025 | 3601036 | Non coding |
83.
| (TTTC)3 | 12 | 3633827 | 3633838 | Non coding |
84.
| (TAAA)3 | 12 | 3665548 | 3665559 | Coding |
85.
| (TAAA)3 | 12 | 3695028 | 3695039 | Non coding |
86.
| (TACA)3 | 12 | 3822248 | 3822259 | Coding |
87.
| (AAGA)3 | 12 | 3922230 | 3922241 | Coding |
88.
| (TAAA)5 | 20 | 4031369 | 4031388 | Non coding |
89.
| (GAAG)4 | 16 | 4073056 | 4073071 | Non coding |
90.
| (ATTA)3 | 12 | 4197434 | 4197445 | Coding |
91.
| (TAAA)3 | 12 | 4310701 | 4310712 | Coding |
92.
| (AATT)3 | 12 | 4316009 | 4316020 | Coding-Non coding |
93.
| (TTTA)3 | 12 | 4321875 | 4321886 | Non coding |
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Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71
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