CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Anabaena sp. 90 (NC_019427 4329265 bp)                                                               Show Primer       Download
Compound : 1     Perfect Compound : 0   Overlapping Compound : 1
Perfect      : 257     Density of SSR      : 1SSR/ 16.78 kb   Average length of SSR  : 13.5 bp
Coding      : 190     Non-Coding           : 61   Coding and Non-Coding : 7
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 3 136 93 8 17 257
IMPERFECT 4 132 1675 1289 145 129 3374
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (AACT)3121222612237Coding
2. (TTCT)5202329123310Non coding
3. (TTCT)312106059106070Non coding
4. (TAAA)312162196162207Coding
5. (AAAT)312167668167679Coding
6. (TTGT)312198649198660Coding
7. (AATA)312215017215028Coding
8. (ACAA)312347265347276Coding
9. (CAGC)312371095371106Coding
10. (AATA)312403951403962Coding
11. (ATTT)312425196425207Non coding
12. (TAAG)312425271425282Non coding
13. (TAAC)312427282427293Coding-Non coding
14. (CTTC)416455006455021Coding
15. (CTTC)312487706487717Non coding
16. (ATCT)312502497502508Coding
17. (ATTA)312578866578877Non coding
18. (TGAT)312603390603401Coding
19. (TGAT)312644616644627Coding
20. (TTTA)312663430663441Coding-Non coding
21. (AAGA)312712129712140Non coding
22. (TGAT)312847899847910Non coding
23. (GTAG)312847922847933Non coding
24. (TACT)312848019848030Non coding
25. (AAGA)312917107917118Coding
26. (AAAT)312940458940469Coding
27. (AATT)312969986969997Non coding
28. (GATA)31210690531069064Coding
29. (CAAT)31211595131159524Coding
30. (GATT)31211998411199852Coding
31. (GCAA)31213693351369346Coding
32. (GTTT)31214387961438807Coding
33. (GAAA)52014664831466502Non coding
34. (AACA)31215141001514111Coding
35. (CACC)31215496901549701Coding
36. (ATTA)31215967191596730Coding-Non coding
37. (ATTT)31216479001647911Coding
38. (CTTC)31216628141662825Non coding
39. (AAAC)31217228241722835Coding
40. (AATT)31217489261748937Coding
41. (TGCT)31217547161754727Coding
42. (AAAT)31219152901915301Non coding
43. (TTTA)31219617731961784Non coding
44. (AGAA)31220045692004580Coding
45. (GAAA)31221222212122232Coding
46. (ATAA)31221998922199903Coding
47. (ATAA)31222141302214141Coding
48. (TAAT)31222203822220393Non coding
49. (TAAT)31222204502220461Non coding
50. (TAAT)31222205182220529Non coding
51. (TAAT)31222205862220597Non coding
52. (TAAT)31222206362220647Non coding
53. (TTAT)31222258612225872Non coding
54. (TTTG)31222269982227009Coding
55. (GTAT)41622902742290289Non coding
56. (AAAT)31224652882465299Coding
57. (TTTA)31225579482557959Non coding
58. (AAGA)31226570012657012Coding
59. (ATAA)31227565292756540Coding-Non coding
60. (AAGT)31227568782756889Non coding
61. (TTTC)31228303452830356Non coding
62. (TTGT)31230141083014119Coding
63. (AATT)31230354723035483Coding
64. (TGTT)31230503943050405Coding
65. (ACTG)31231146093114620Coding
66. (AATT)31231212483121259Coding
67. (GATT)31231914263191437Non coding
68. (AAGA)62432096673209690Non coding
69. (AATA)31232358273235838Coding
70. (AATT)31232454243245435Coding-Non coding
71. (AATG)31232496173249628Coding-Non coding
72. (CTGG)31232997173299728Coding
73. (AACA)31233023833302394Coding
74. (CATT)31233347163334727Coding
75. (CATT)31233429523342963Coding
76. (TCAG)31233510723351083Coding
77. (CACC)31233533063353317Coding
78. (TTCT)62433640253364048Non coding
79. (AAAT)31234315433431554Coding
80. (TTGA)31234719033471914Coding
81. (AATT)31234912823491293Coding
82. (GAAG)31236010253601036Non coding
83. (TTTC)31236338273633838Non coding
84. (TAAA)31236655483665559Coding
85. (TAAA)31236950283695039Non coding
86. (TACA)31238222483822259Coding
87. (AAGA)31239222303922241Coding
88. (TAAA)52040313694031388Non coding
89. (GAAG)41640730564073071Non coding
90. (ATTA)31241974344197445Coding
91. (TAAA)31243107014310712Coding
92. (AATT)31243160094316020Coding-Non coding
93. (TTTA)31243218754321886Non coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.