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Organism:
Anabaena sp. 90
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(NC_019427 , 4329265 bp)
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Show Primer
Download
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Compound
:
1
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Perfect Compound
:
0
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Overlapping Compound
:
1
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Perfect
:
257
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Density of SSR
:
1SSR/
16.78
kb
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Average length of SSR
:
13.5
bp
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Coding
:
190
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Non-Coding
:
61
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Coding and Non-Coding
:
7
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Perfect SSRs
| S. No. | MOTIF | LENGTH | START | END | REGION |
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1.
| (AACT)3 | 12 | 12226 | 12237 | Coding |
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2.
| (TTCT)5 | 20 | 23291 | 23310 | Non coding |
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3.
| (TTCT)3 | 12 | 106059 | 106070 | Non coding |
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4.
| (TAAA)3 | 12 | 162196 | 162207 | Coding |
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5.
| (AAAT)3 | 12 | 167668 | 167679 | Coding |
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6.
| (TTGT)3 | 12 | 198649 | 198660 | Coding |
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7.
| (AATA)3 | 12 | 215017 | 215028 | Coding |
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8.
| (ACAA)3 | 12 | 347265 | 347276 | Coding |
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9.
| (CAGC)3 | 12 | 371095 | 371106 | Coding |
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10.
| (AATA)3 | 12 | 403951 | 403962 | Coding |
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11.
| (ATTT)3 | 12 | 425196 | 425207 | Non coding |
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12.
| (TAAG)3 | 12 | 425271 | 425282 | Non coding |
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13.
| (TAAC)3 | 12 | 427282 | 427293 | Coding-Non coding |
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14.
| (CTTC)4 | 16 | 455006 | 455021 | Coding |
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15.
| (CTTC)3 | 12 | 487706 | 487717 | Non coding |
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16.
| (ATCT)3 | 12 | 502497 | 502508 | Coding |
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17.
| (ATTA)3 | 12 | 578866 | 578877 | Non coding |
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18.
| (TGAT)3 | 12 | 603390 | 603401 | Coding |
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19.
| (TGAT)3 | 12 | 644616 | 644627 | Coding |
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20.
| (TTTA)3 | 12 | 663430 | 663441 | Coding-Non coding |
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21.
| (AAGA)3 | 12 | 712129 | 712140 | Non coding |
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22.
| (TGAT)3 | 12 | 847899 | 847910 | Non coding |
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23.
| (GTAG)3 | 12 | 847922 | 847933 | Non coding |
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24.
| (TACT)3 | 12 | 848019 | 848030 | Non coding |
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25.
| (AAGA)3 | 12 | 917107 | 917118 | Coding |
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26.
| (AAAT)3 | 12 | 940458 | 940469 | Coding |
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27.
| (AATT)3 | 12 | 969986 | 969997 | Non coding |
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28.
| (GATA)3 | 12 | 1069053 | 1069064 | Coding |
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29.
| (CAAT)3 | 12 | 1159513 | 1159524 | Coding |
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30.
| (GATT)3 | 12 | 1199841 | 1199852 | Coding |
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31.
| (GCAA)3 | 12 | 1369335 | 1369346 | Coding |
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32.
| (GTTT)3 | 12 | 1438796 | 1438807 | Coding |
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33.
| (GAAA)5 | 20 | 1466483 | 1466502 | Non coding |
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34.
| (AACA)3 | 12 | 1514100 | 1514111 | Coding |
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35.
| (CACC)3 | 12 | 1549690 | 1549701 | Coding |
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36.
| (ATTA)3 | 12 | 1596719 | 1596730 | Coding-Non coding |
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37.
| (ATTT)3 | 12 | 1647900 | 1647911 | Coding |
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38.
| (CTTC)3 | 12 | 1662814 | 1662825 | Non coding |
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39.
| (AAAC)3 | 12 | 1722824 | 1722835 | Coding |
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40.
| (AATT)3 | 12 | 1748926 | 1748937 | Coding |
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41.
| (TGCT)3 | 12 | 1754716 | 1754727 | Coding |
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42.
| (AAAT)3 | 12 | 1915290 | 1915301 | Non coding |
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43.
| (TTTA)3 | 12 | 1961773 | 1961784 | Non coding |
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44.
| (AGAA)3 | 12 | 2004569 | 2004580 | Coding |
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45.
| (GAAA)3 | 12 | 2122221 | 2122232 | Coding |
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46.
| (ATAA)3 | 12 | 2199892 | 2199903 | Coding |
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47.
| (ATAA)3 | 12 | 2214130 | 2214141 | Coding |
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48.
| (TAAT)3 | 12 | 2220382 | 2220393 | Non coding |
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49.
| (TAAT)3 | 12 | 2220450 | 2220461 | Non coding |
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50.
| (TAAT)3 | 12 | 2220518 | 2220529 | Non coding |
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51.
| (TAAT)3 | 12 | 2220586 | 2220597 | Non coding |
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52.
| (TAAT)3 | 12 | 2220636 | 2220647 | Non coding |
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53.
| (TTAT)3 | 12 | 2225861 | 2225872 | Non coding |
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54.
| (TTTG)3 | 12 | 2226998 | 2227009 | Coding |
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55.
| (GTAT)4 | 16 | 2290274 | 2290289 | Non coding |
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56.
| (AAAT)3 | 12 | 2465288 | 2465299 | Coding |
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57.
| (TTTA)3 | 12 | 2557948 | 2557959 | Non coding |
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58.
| (AAGA)3 | 12 | 2657001 | 2657012 | Coding |
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59.
| (ATAA)3 | 12 | 2756529 | 2756540 | Coding-Non coding |
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60.
| (AAGT)3 | 12 | 2756878 | 2756889 | Non coding |
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61.
| (TTTC)3 | 12 | 2830345 | 2830356 | Non coding |
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62.
| (TTGT)3 | 12 | 3014108 | 3014119 | Coding |
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63.
| (AATT)3 | 12 | 3035472 | 3035483 | Coding |
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64.
| (TGTT)3 | 12 | 3050394 | 3050405 | Coding |
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65.
| (ACTG)3 | 12 | 3114609 | 3114620 | Coding |
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66.
| (AATT)3 | 12 | 3121248 | 3121259 | Coding |
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67.
| (GATT)3 | 12 | 3191426 | 3191437 | Non coding |
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68.
| (AAGA)6 | 24 | 3209667 | 3209690 | Non coding |
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69.
| (AATA)3 | 12 | 3235827 | 3235838 | Coding |
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70.
| (AATT)3 | 12 | 3245424 | 3245435 | Coding-Non coding |
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71.
| (AATG)3 | 12 | 3249617 | 3249628 | Coding-Non coding |
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72.
| (CTGG)3 | 12 | 3299717 | 3299728 | Coding |
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73.
| (AACA)3 | 12 | 3302383 | 3302394 | Coding |
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74.
| (CATT)3 | 12 | 3334716 | 3334727 | Coding |
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75.
| (CATT)3 | 12 | 3342952 | 3342963 | Coding |
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76.
| (TCAG)3 | 12 | 3351072 | 3351083 | Coding |
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77.
| (CACC)3 | 12 | 3353306 | 3353317 | Coding |
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78.
| (TTCT)6 | 24 | 3364025 | 3364048 | Non coding |
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79.
| (AAAT)3 | 12 | 3431543 | 3431554 | Coding |
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80.
| (TTGA)3 | 12 | 3471903 | 3471914 | Coding |
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81.
| (AATT)3 | 12 | 3491282 | 3491293 | Coding |
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82.
| (GAAG)3 | 12 | 3601025 | 3601036 | Non coding |
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83.
| (TTTC)3 | 12 | 3633827 | 3633838 | Non coding |
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84.
| (TAAA)3 | 12 | 3665548 | 3665559 | Coding |
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85.
| (TAAA)3 | 12 | 3695028 | 3695039 | Non coding |
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86.
| (TACA)3 | 12 | 3822248 | 3822259 | Coding |
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87.
| (AAGA)3 | 12 | 3922230 | 3922241 | Coding |
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88.
| (TAAA)5 | 20 | 4031369 | 4031388 | Non coding |
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89.
| (GAAG)4 | 16 | 4073056 | 4073071 | Non coding |
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90.
| (ATTA)3 | 12 | 4197434 | 4197445 | Coding |
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91.
| (TAAA)3 | 12 | 4310701 | 4310712 | Coding |
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92.
| (AATT)3 | 12 | 4316009 | 4316020 | Coding-Non coding |
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93.
| (TTTA)3 | 12 | 4321875 | 4321886 | Non coding |
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Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71
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