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Organism:
Anabaena sp. 90
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(NC_019439 , 819966 bp)
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Show Primer
Download
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Compound
:
0
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Perfect Compound
:
0
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Overlapping Compound
:
0
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Perfect
:
55
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Density of SSR
:
1SSR/
14.91
kb
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Average length of SSR
:
13.31
bp
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Coding
:
40
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Non-Coding
:
14
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Coding and Non-Coding
:
1
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| REPEAT | MONO | DI | TRI | TETRA | PENTA | HEXA | TOTAL |
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PERFECT
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0
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1
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28
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21
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2
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3
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55
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Perfect SSRs
| S. No. | MOTIF | LENGTH | START | END | REGION |
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1.
| (AAGA)5 | 20 | 5865 | 5884 | Non coding |
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2.
| (GAT)5 | 15 | 12346 | 12360 | Coding |
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3.
| (AACT)3 | 12 | 38378 | 38389 | Coding |
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4.
| (AGC)5 | 15 | 40457 | 40471 | Coding |
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5.
| (AATT)3 | 12 | 117485 | 117496 | Coding |
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6.
| (GCA)4 | 12 | 134810 | 134821 | Coding |
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7.
| (CAA)4 | 12 | 160938 | 160949 | Coding |
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8.
| (TGG)4 | 12 | 218447 | 218458 | Coding |
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9.
| (ATTT)3 | 12 | 226867 | 226878 | Non coding |
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10.
| (AAG)4 | 12 | 238211 | 238222 | Non coding |
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11.
| (AGC)5 | 15 | 246051 | 246065 | Coding |
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12.
| (GATTG)3 | 15 | 267238 | 267252 | Non coding |
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13.
| (TTC)4 | 12 | 279970 | 279981 | Coding |
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14.
| (GCT)4 | 12 | 290792 | 290803 | Coding |
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15.
| (TAA)4 | 12 | 293760 | 293771 | Coding |
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16.
| (CCA)4 | 12 | 298771 | 298782 | Coding |
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17.
| (TGT)4 | 12 | 304872 | 304883 | Coding |
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18.
| (TGA)4 | 12 | 308061 | 308072 | Coding |
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19.
| (TTAC)3 | 12 | 308444 | 308455 | Coding |
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20.
| (TTTG)3 | 12 | 347977 | 347988 | Coding |
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21.
| (GCT)4 | 12 | 378726 | 378737 | Coding |
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22.
| (TTGAA)3 | 15 | 409160 | 409174 | Non coding |
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23.
| (ATT)4 | 12 | 420691 | 420702 | Coding |
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24.
| (ATA)7 | 21 | 423050 | 423070 | Non coding |
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25.
| (TTC)4 | 12 | 425780 | 425791 | Non coding |
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26.
| (CCA)4 | 12 | 447466 | 447477 | Coding |
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27.
| (CTAT)3 | 12 | 451155 | 451166 | Non coding |
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28.
| (TTCT)3 | 12 | 476866 | 476877 | Non coding |
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29.
| (TGC)4 | 12 | 478562 | 478573 | Coding |
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30.
| (AATT)3 | 12 | 484441 | 484452 | Coding |
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31.
| (GTG)4 | 12 | 530252 | 530263 | Coding |
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32.
| (GTG)5 | 15 | 530692 | 530706 | Coding |
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33.
| (TAAA)3 | 12 | 533619 | 533630 | Coding |
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34.
| (AGA)4 | 12 | 546753 | 546764 | Coding |
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35.
| (CTGAAT)3 | 18 | 557925 | 557942 | Coding |
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36.
| (ATAAAA)3 | 18 | 573248 | 573265 | Non coding |
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37.
| (AT)8 | 16 | 583027 | 583042 | Non coding |
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38.
| (TTTG)3 | 12 | 592319 | 592330 | Coding |
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39.
| (AGAA)3 | 12 | 600109 | 600120 | Coding |
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40.
| (AGAA)3 | 12 | 600171 | 600182 | Coding |
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41.
| (AGAA)3 | 12 | 600213 | 600224 | Coding |
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42.
| (TACT)3 | 12 | 607111 | 607122 | Coding-Non coding |
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43.
| (TAT)4 | 12 | 616280 | 616291 | Non coding |
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44.
| (TTC)4 | 12 | 640185 | 640196 | Coding |
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45.
| (ATATTG)3 | 18 | 664169 | 664186 | Coding |
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46.
| (ACCC)3 | 12 | 678176 | 678187 | Coding |
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47.
| (CCAA)3 | 12 | 679436 | 679447 | Non coding |
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48.
| (ACC)4 | 12 | 697298 | 697309 | Coding |
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49.
| (TCCA)3 | 12 | 724546 | 724557 | Coding |
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50.
| (ATTT)3 | 12 | 742401 | 742412 | Coding |
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51.
| (AAAC)3 | 12 | 770314 | 770325 | Non coding |
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52.
| (TAA)4 | 12 | 793119 | 793130 | Coding |
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53.
| (CGC)4 | 12 | 807034 | 807045 | Coding |
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54.
| (GTG)9 | 27 | 816984 | 817010 | Coding |
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55.
| (TAAA)3 | 12 | 818020 | 818031 | Coding |
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Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71
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