CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Anabaena sp. 90 (NC_019439 819966 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 55     Density of SSR      : 1SSR/ 14.91 kb   Average length of SSR  : 13.31 bp
Coding      : 40     Non-Coding           : 14   Coding and Non-Coding : 1
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 1 28 21 2 3 55
IMPERFECT 1 19 329 265 20 28 662
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (AAGA)52058655884Non coding
2. (GAT)5151234612360Coding
3. (AACT)3123837838389Coding
4. (AGC)5154045740471Coding
5. (AATT)312117485117496Coding
6. (GCA)412134810134821Coding
7. (CAA)412160938160949Coding
8. (TGG)412218447218458Coding
9. (ATTT)312226867226878Non coding
10. (AAG)412238211238222Non coding
11. (AGC)515246051246065Coding
12. (GATTG)315267238267252Non coding
13. (TTC)412279970279981Coding
14. (GCT)412290792290803Coding
15. (TAA)412293760293771Coding
16. (CCA)412298771298782Coding
17. (TGT)412304872304883Coding
18. (TGA)412308061308072Coding
19. (TTAC)312308444308455Coding
20. (TTTG)312347977347988Coding
21. (GCT)412378726378737Coding
22. (TTGAA)315409160409174Non coding
23. (ATT)412420691420702Coding
24. (ATA)721423050423070Non coding
25. (TTC)412425780425791Non coding
26. (CCA)412447466447477Coding
27. (CTAT)312451155451166Non coding
28. (TTCT)312476866476877Non coding
29. (TGC)412478562478573Coding
30. (AATT)312484441484452Coding
31. (GTG)412530252530263Coding
32. (GTG)515530692530706Coding
33. (TAAA)312533619533630Coding
34. (AGA)412546753546764Coding
35. (CTGAAT)318557925557942Coding
36. (ATAAAA)318573248573265Non coding
37. (AT)816583027583042Non coding
38. (TTTG)312592319592330Coding
39. (AGAA)312600109600120Coding
40. (AGAA)312600171600182Coding
41. (AGAA)312600213600224Coding
42. (TACT)312607111607122Coding-Non coding
43. (TAT)412616280616291Non coding
44. (TTC)412640185640196Coding
45. (ATATTG)318664169664186Coding
46. (ACCC)312678176678187Coding
47. (CCAA)312679436679447Non coding
48. (ACC)412697298697309Coding
49. (TCCA)312724546724557Coding
50. (ATTT)312742401742412Coding
51. (AAAC)312770314770325Non coding
52. (TAA)412793119793130Coding
53. (CGC)412807034807045Coding
54. (GTG)927816984817010Coding
55. (TAAA)312818020818031Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.