CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Anabaena variabilis ATCC 29413 (NC_007413 6365728 bp)                                                               Show Primer       Download
Compound : 1     Perfect Compound : 1   Overlapping Compound : 0
Perfect      : 267     Density of SSR      : 1SSR/ 23.75 kb   Average length of SSR  : 13.1 bp
Coding      : 236     Non-Coding           : 30   Coding and Non-Coding : 2
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 1 159 80 6 21 267
IMPERFECT 0 211 2175 1731 162 145 4424
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (AAAAT)3154481844832Coding
2. (GCA)4125417954190Coding
3. (TTG)5155554655560Coding
4. (ACC)412139332139343Coding
5. (AGA)412144355144366Coding
6. (GGT)412177025177036Coding
7. (TTTAC)315304446304460Coding
8. (TAAC)312318932318943Coding
9. (TTA)412321311321322Coding
10. (CGC)412328555328566Coding
11. (CAA)515338851338865Coding
12. (AAAT)312394562394573Coding
13. (AAAT)312449539449550Coding
14. (ACC)412454633454644Coding
15. (CCG)412484493484504Coding
16. (ATC)412506345506356Coding
17. (ATTG)312512211512222Coding
18. (TTA)412539817539828Non coding
19. (GGT)412562677562688Coding
20. (TCG)412572768572779Coding
21. (ACCA)312637709637720Coding
22. (CCAA)312663701663712Coding
23. (TCAA)312684761684772Coding
24. (TGA)412697337697348Coding
25. (CGC)412713282713293Coding
26. (ACTA)312745660745671Non coding
27. (ATCT)312822876822887Coding
28. (AACA)312828040828051Non coding
29. (GTG)412875017875028Coding
30. (AATA)312911671911682Coding
31. (TTA)412952535952546Coding
32. (TGC)412962012962023Coding
33. (GGTGCA)318963220963237Coding
34. (GGT)412972956972967Coding
35. (CCGA)31210842271084238Coding
36. (TCA)61810979521097969Coding
37. (ATC)41211124471112458Coding
38. (ATA)41211166031116614Coding
39. (CAG)41211182201118231Coding
40. (ATG)41211521501152161Coding
41. (CCG)41211625191162530Coding
42. (CCG)41211728511172862Coding
43. (ATCA)31211806361180647Non coding
44. (GCC)41211944261194437Coding
45. (ACC)41211966371196648Coding
46. (AACA)31212586741258685Coding
47. (GTT)41212722241272235Coding
48. (CAC)41212797861279797Coding
49. (CCG)41212901641290175Coding
50. (GTACA)31513069921307006Coding
51. (GCCA)31213216541321665Coding
52. (TAA)41213557991355810Coding
53. (CACC)31213763451376356Coding
54. (GAAA)31213788321378843Coding
55. (CAT)41214289391428950Coding
56. (GAA)41214480081448019Coding
57. (TCA)41214960641496075Coding
58. (CCG)41215003671500378Coding
59. (CGC)41215186971518708Coding
60. (TGT)41215295591529570Coding
61. (CTT)41215315951531606Coding
62. (TCA)51515586311558645Coding
63. (TTC)41215586871558698Coding
64. (CGT)41215725001572511Coding
65. (ATTT)31215937021593713Coding
66. (TTTTAT)31815939411593958Coding
67. (CAG)41216291951629206Coding
68. (ACCA)31216361731636184Coding
69. (GGC)51517575051757519Coding
70. (TGG)41218036361803647Coding
71. (AACCAG)31818159931816010Coding
72. (CAGC)31218608661860877Coding
73. (TAG)41218849811884992Coding
74. (GATA)31219657911965802Coding
75. (GAAA)31219774611977472Coding
76. (GTTG)31219865261986537Coding
77. (ACAA)31220165572016568Coding
78. (GTA)41220218442021855Coding
79. (CCG)41220846762084687Coding
80. (GCC)41221569472156958Coding
81. (TAA)41221913812191392Coding
82. (CGC)51522010982201112Coding
83. (CCA)41222013162201327Coding
84. (CCA)41222222852222296Coding
85. (CCA)51522223062222320Coding
86. (CCA)41222223332222344Coding
87. (CCA)41222223572222368Coding
88. (CCA)72122223722222392Coding
89. (CCA)72122223962222416Coding
90. (CCA)41222224292222440Coding
91. (CCA)41222224532222464Coding
92. (CCA)51522224682222482Coding
93. (ATT)41222269862226997Coding
94. (AAT)51522307332230747Coding
95. (ACC)41222852452285256Coding
96. (TTAT)31222863182286329Non coding
97. (TGTT)41622870712287086Coding
98. (ATT)41222913682291379Coding
99. (AATA)31223885922388603Non coding
100. (GCC)51524303812430395Coding
101. (CAC)41224785502478561Coding
102. (AACA)31224878762487887Non coding
103. (TGA)41225110432511054Coding
104. (GCC)41225197652519776Coding
105. (TTA)51525238312523845Coding
106. (TTTA)31226101242610135Non coding
107. (GTA)41226138282613839Coding
108. (TCAA)31226889232688934Coding
109. (GCT)41228201862820197Coding
110. (GATTGG)31828719762871993Non coding
111. (TCT)41228782032878214Coding
112. (TGGTG)31528818832881897Non coding
113. (TCG)41229096702909681Coding
114. (AACC)31229461432946154Coding
115. (AAT)41229609652960976Coding
116. (TATT)31229733482973359Coding
117. (CAGT)31229874652987476Coding
118. (ATA)41230295823029593Coding
119. (TTGACC)31830453303045347Coding
120. (TTGACC)31830453573045374Coding
121. (TTGACC)31830453843045401Coding
122. (TTGACC)31830454113045428Coding
123. (TTGACC)31830454383045455Coding
124. (GAA)41230530683053079Coding
125. (TTA)41230563423056353Coding
126. (CTG)51530794073079421Coding
127. (ACA)41231070843107095Coding
128. (ATG)41231115023111513Coding
129. (AAAT)31231560613156072Non coding
130. (TCA)41231621913162202Coding
131. (TGCT)31231806373180648Coding
132. (TGG)41232413083241319Coding
133. (ATTA)31232460283246039Non coding
134. (GTT)41232481503248161Coding
135. (TGA)41232558833255894Coding
136. (TTAT)31233912633391274Non coding
137. (CGG)41234112963411307Coding
138. (TTG)41234296003429611Coding
139. (ACC)41234423253442336Coding-Non coding
140. (TAC)41234613963461407Coding
141. (GATT)31234653693465380Coding
142. (CAG)41235004813500492Coding
143. (GGA)51535021313502145Coding
144. (AGCCCA)31835539763553993Coding
145. (GCG)41235605523560563Coding
146. (TTG)41235742583574269Coding
147. (CGC)41235829713582982Coding
148. (AAAC)31235961503596161Coding
149. (GTC)41236006463600657Coding
150. (GCT)41236367143636725Coding
151. (TAAG)31236713213671332Coding
152. (TAA)41236957733695784Coding
153. (CAT)41237930413793052Coding
154. (TAAA)31238010193801030Coding
155. (ACA)41238257033825714Coding
156. (TTTG)31238304463830457Coding
157. (CCA)41238326153832626Coding
158. (TTG)41238339113833922Coding
159. (TGG)41238360193836030Coding
160. (TTG)51538478503847864Non coding
161. (GAGT)31238492483849259Non coding
162. (CGC)41238741533874164Coding
163. (GGTT)31238829923883003Coding
164. (CCCAAC)31838919373891954Coding
165. (CCCAAC)31838919613891978Coding
166. (CCCAAC)31838920033892020Coding
167. (CCCAAC)31838920693892086Coding
168. (GGT)41239231963923207Coding
169. (TGGT)31239342683934279Coding
170. (AATT)31239399663939977Non coding
171. (CCAGCA)42439439913944014Coding
172. (CAAA)31239486513948662Coding
173. (CAG)41240017044001715Coding
174. (GCA)41240078934007904Coding
175. (AAAT)31240899754089986Coding
176. (AAG)41241364104136421Coding
177. (AATT)41641810694181084Coding-Non coding
178. (GTT)51541869734186987Coding
179. (GA)61241911984191209Coding
180. (TAAA)31242156414215652Coding
181. (TTGT)31242440084244019Coding
182. (GCC)41242612224261233Coding
183. (CGC)41242629784262989Coding
184. (GCG)41242848764284887Coding
185. (GCG)41242849844284995Coding
186. (GCG)41242850924285103Coding
187. (GAT)41243371494337160Coding
188. (TCCA)31243532084353219Coding
189. (GCG)41243922814392292Coding
190. (CCG)41243936544393665Coding
191. (AAAT)31244358394435850Coding
192. (AATA)31244490284449039Coding
193. (TAAA)31244538114453822Non coding
194. (TAC)41245845324584543Coding
195. (TGG)41246283074628318Coding
196. (GTTT)31246364294636440Coding
197. (CGC)41246485064648517Coding
198. (AATC)31246737624673773Coding
199. (TGG)41246761024676113Coding
200. (CCCAAC)31846775564677573Coding
201. (AATT)31246783594678370Non coding
202. (ATCC)31246862404686251Coding
203. (AAAT)31247190524719063Coding
204. (GAA)41247397554739766Coding
205. (CCG)51547518494751863Coding
206. (ATTT)31247922254792236Non coding
207. (AATT)31248095574809568Coding
208. (ATTT)31248128334812844Non coding
209. (AAGT)31248899064889917Coding
210. (TAC)41249714094971420Coding
211. (GAA)41249799534979964Coding
212. (GGATT)31549989374998951Coding
213. (AAGA)31250112755011286Non coding
214. (TCA)41250426485042659Coding
215. (ACA)41250479585047969Coding
216. (GGT)41250535445053555Coding
217. (AAGC)31250646215064632Non coding
218. (GAA)41250711905071201Coding
219. (ATTG)31250823465082357Coding
220. (CAA)41251182805118291Coding
221. (GTAA)31251435285143539Non coding
222. (CAAA)31251549735154984Coding
223. (CCTA)41651738065173821Non coding
224. (ATACAT)31851754415175458Coding
225. (CTG)41251906715190682Coding
226. (ACC)41251928365192847Coding
227. (CCA)41251958825195893Coding
228. (TCA)41251978835197894Coding
229. (TCA)41251995665199577Coding
230. (GGT)41252009795200990Coding
231. (GGT)61852010395201056Coding
232. (GGTATT)42452010635201086Coding
233. (GGTATT)42452010905201113Coding
234. (TGGTAT)42452011165201139Coding
235. (AGCACC)31852873095287326Coding
236. (CGC)41253015675301578Coding
237. (CAA)41253018525301863Coding
238. (ATG)41253261985326209Coding
239. (TTA)41253689905369001Coding
240. (TTTG)31253880085388019Coding
241. (GCT)41254194735419484Coding
242. (CCAC)31254463995446410Coding
243. (ACC)41254568875456898Coding
244. (TAAA)31255594475559458Non coding
245. (CAG)41255787625578773Coding
246. (GCG)41256019915602002Coding
247. (CATC)31256108335610844Coding
248. (TTGA)31256220095622020Coding
249. (GGC)41256281485628159Coding
250. (AATA)31256552325655243Non coding
251. (GCG)41256919375691948Coding
252. (TATG)31256977365697747Coding
253. (GTAAA)31557020305702044Non coding
254. (TAA)41257027765702787Non coding
255. (TCAA)31257069135706924Coding
256. (GGC)41257274865727497Coding
257. (GGC)41257426925742703Coding
258. (AAC)41258696805869691Coding
259. (GAT)41258732725873283Coding
260. (ATGG)31260096726009683Coding
261. (ACC)41260785146078525Coding
262. (GAA)41260839116083922Coding
263. (TAT)41260929376092948Coding
264. (AGC)41261469776146988Coding
265. (TATT)31263086556308666Non coding
266. (AAT)41263553846355395Non coding
267. (CGG)41263600046360015Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.