CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Anabaena variabilis ATCC 29413 (NC_007413 6365728 bp)                                                               Show Primer       Download
Compound : 1     Perfect Compound : 1   Overlapping Compound : 0
Perfect      : 267     Density of SSR      : 1SSR/ 23.75 kb   Average length of SSR  : 13.1 bp
Coding      : 236     Non-Coding           : 30   Coding and Non-Coding : 2
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 1 159 80 6 21 267
IMPERFECT 0 211 2175 1731 162 145 4424
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (GCA)4125417954190Coding
2. (TTG)5155554655560Coding
3. (ACC)412139332139343Coding
4. (AGA)412144355144366Coding
5. (GGT)412177025177036Coding
6. (TTA)412321311321322Coding
7. (CGC)412328555328566Coding
8. (CAA)515338851338865Coding
9. (ACC)412454633454644Coding
10. (CCG)412484493484504Coding
11. (ATC)412506345506356Coding
12. (TTA)412539817539828Non coding
13. (GGT)412562677562688Coding
14. (TCG)412572768572779Coding
15. (TGA)412697337697348Coding
16. (CGC)412713282713293Coding
17. (GTG)412875017875028Coding
18. (TTA)412952535952546Coding
19. (TGC)412962012962023Coding
20. (GGT)412972956972967Coding
21. (TCA)61810979521097969Coding
22. (ATC)41211124471112458Coding
23. (ATA)41211166031116614Coding
24. (CAG)41211182201118231Coding
25. (ATG)41211521501152161Coding
26. (CCG)41211625191162530Coding
27. (CCG)41211728511172862Coding
28. (GCC)41211944261194437Coding
29. (ACC)41211966371196648Coding
30. (GTT)41212722241272235Coding
31. (CAC)41212797861279797Coding
32. (CCG)41212901641290175Coding
33. (TAA)41213557991355810Coding
34. (CAT)41214289391428950Coding
35. (GAA)41214480081448019Coding
36. (TCA)41214960641496075Coding
37. (CCG)41215003671500378Coding
38. (CGC)41215186971518708Coding
39. (TGT)41215295591529570Coding
40. (CTT)41215315951531606Coding
41. (TCA)51515586311558645Coding
42. (TTC)41215586871558698Coding
43. (CGT)41215725001572511Coding
44. (CAG)41216291951629206Coding
45. (GGC)51517575051757519Coding
46. (TGG)41218036361803647Coding
47. (TAG)41218849811884992Coding
48. (GTA)41220218442021855Coding
49. (CCG)41220846762084687Coding
50. (GCC)41221569472156958Coding
51. (TAA)41221913812191392Coding
52. (CGC)51522010982201112Coding
53. (CCA)41222013162201327Coding
54. (CCA)41222222852222296Coding
55. (CCA)51522223062222320Coding
56. (CCA)41222223332222344Coding
57. (CCA)41222223572222368Coding
58. (CCA)72122223722222392Coding
59. (CCA)72122223962222416Coding
60. (CCA)41222224292222440Coding
61. (CCA)41222224532222464Coding
62. (CCA)51522224682222482Coding
63. (ATT)41222269862226997Coding
64. (AAT)51522307332230747Coding
65. (ACC)41222852452285256Coding
66. (ATT)41222913682291379Coding
67. (GCC)51524303812430395Coding
68. (CAC)41224785502478561Coding
69. (TGA)41225110432511054Coding
70. (GCC)41225197652519776Coding
71. (TTA)51525238312523845Coding
72. (GTA)41226138282613839Coding
73. (GCT)41228201862820197Coding
74. (TCT)41228782032878214Coding
75. (TCG)41229096702909681Coding
76. (AAT)41229609652960976Coding
77. (ATA)41230295823029593Coding
78. (GAA)41230530683053079Coding
79. (TTA)41230563423056353Coding
80. (CTG)51530794073079421Coding
81. (ACA)41231070843107095Coding
82. (ATG)41231115023111513Coding
83. (TCA)41231621913162202Coding
84. (TGG)41232413083241319Coding
85. (GTT)41232481503248161Coding
86. (TGA)41232558833255894Coding
87. (CGG)41234112963411307Coding
88. (TTG)41234296003429611Coding
89. (ACC)41234423253442336Coding-Non coding
90. (TAC)41234613963461407Coding
91. (CAG)41235004813500492Coding
92. (GGA)51535021313502145Coding
93. (GCG)41235605523560563Coding
94. (TTG)41235742583574269Coding
95. (CGC)41235829713582982Coding
96. (GTC)41236006463600657Coding
97. (GCT)41236367143636725Coding
98. (TAA)41236957733695784Coding
99. (CAT)41237930413793052Coding
100. (ACA)41238257033825714Coding
101. (CCA)41238326153832626Coding
102. (TTG)41238339113833922Coding
103. (TGG)41238360193836030Coding
104. (TTG)51538478503847864Non coding
105. (CGC)41238741533874164Coding
106. (GGT)41239231963923207Coding
107. (CAG)41240017044001715Coding
108. (GCA)41240078934007904Coding
109. (AAG)41241364104136421Coding
110. (GTT)51541869734186987Coding
111. (GCC)41242612224261233Coding
112. (CGC)41242629784262989Coding
113. (GCG)41242848764284887Coding
114. (GCG)41242849844284995Coding
115. (GCG)41242850924285103Coding
116. (GAT)41243371494337160Coding
117. (GCG)41243922814392292Coding
118. (CCG)41243936544393665Coding
119. (TAC)41245845324584543Coding
120. (TGG)41246283074628318Coding
121. (CGC)41246485064648517Coding
122. (TGG)41246761024676113Coding
123. (GAA)41247397554739766Coding
124. (CCG)51547518494751863Coding
125. (TAC)41249714094971420Coding
126. (GAA)41249799534979964Coding
127. (TCA)41250426485042659Coding
128. (ACA)41250479585047969Coding
129. (GGT)41250535445053555Coding
130. (GAA)41250711905071201Coding
131. (CAA)41251182805118291Coding
132. (CTG)41251906715190682Coding
133. (ACC)41251928365192847Coding
134. (CCA)41251958825195893Coding
135. (TCA)41251978835197894Coding
136. (TCA)41251995665199577Coding
137. (GGT)41252009795200990Coding
138. (GGT)61852010395201056Coding
139. (CGC)41253015675301578Coding
140. (CAA)41253018525301863Coding
141. (ATG)41253261985326209Coding
142. (TTA)41253689905369001Coding
143. (GCT)41254194735419484Coding
144. (ACC)41254568875456898Coding
145. (CAG)41255787625578773Coding
146. (GCG)41256019915602002Coding
147. (GGC)41256281485628159Coding
148. (GCG)41256919375691948Coding
149. (TAA)41257027765702787Non coding
150. (GGC)41257274865727497Coding
151. (GGC)41257426925742703Coding
152. (AAC)41258696805869691Coding
153. (GAT)41258732725873283Coding
154. (ACC)41260785146078525Coding
155. (GAA)41260839116083922Coding
156. (TAT)41260929376092948Coding
157. (AGC)41261469776146988Coding
158. (AAT)41263553846355395Non coding
159. (CGG)41263600046360015Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.