CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Anabaena variabilis ATCC 29413 (NC_007413 6365728 bp)                                                               Show Primer       Download
Compound : 1     Perfect Compound : 1   Overlapping Compound : 0
Perfect      : 267     Density of SSR      : 1SSR/ 23.75 kb   Average length of SSR  : 13.1 bp
Coding      : 236     Non-Coding           : 30   Coding and Non-Coding : 2
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 1 159 80 6 21 267
IMPERFECT 0 211 2175 1731 162 145 4424
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (TAAC)312318932318943Coding
2. (AAAT)312394562394573Coding
3. (AAAT)312449539449550Coding
4. (ATTG)312512211512222Coding
5. (ACCA)312637709637720Coding
6. (CCAA)312663701663712Coding
7. (TCAA)312684761684772Coding
8. (ACTA)312745660745671Non coding
9. (ATCT)312822876822887Coding
10. (AACA)312828040828051Non coding
11. (AATA)312911671911682Coding
12. (CCGA)31210842271084238Coding
13. (ATCA)31211806361180647Non coding
14. (AACA)31212586741258685Coding
15. (GCCA)31213216541321665Coding
16. (CACC)31213763451376356Coding
17. (GAAA)31213788321378843Coding
18. (ATTT)31215937021593713Coding
19. (ACCA)31216361731636184Coding
20. (CAGC)31218608661860877Coding
21. (GATA)31219657911965802Coding
22. (GAAA)31219774611977472Coding
23. (GTTG)31219865261986537Coding
24. (ACAA)31220165572016568Coding
25. (TTAT)31222863182286329Non coding
26. (TGTT)41622870712287086Coding
27. (AATA)31223885922388603Non coding
28. (AACA)31224878762487887Non coding
29. (TTTA)31226101242610135Non coding
30. (TCAA)31226889232688934Coding
31. (AACC)31229461432946154Coding
32. (TATT)31229733482973359Coding
33. (CAGT)31229874652987476Coding
34. (AAAT)31231560613156072Non coding
35. (TGCT)31231806373180648Coding
36. (ATTA)31232460283246039Non coding
37. (TTAT)31233912633391274Non coding
38. (GATT)31234653693465380Coding
39. (AAAC)31235961503596161Coding
40. (TAAG)31236713213671332Coding
41. (TAAA)31238010193801030Coding
42. (TTTG)31238304463830457Coding
43. (GAGT)31238492483849259Non coding
44. (GGTT)31238829923883003Coding
45. (TGGT)31239342683934279Coding
46. (AATT)31239399663939977Non coding
47. (CAAA)31239486513948662Coding
48. (AAAT)31240899754089986Coding
49. (AATT)41641810694181084Coding-Non coding
50. (TAAA)31242156414215652Coding
51. (TTGT)31242440084244019Coding
52. (TCCA)31243532084353219Coding
53. (AAAT)31244358394435850Coding
54. (AATA)31244490284449039Coding
55. (TAAA)31244538114453822Non coding
56. (GTTT)31246364294636440Coding
57. (AATC)31246737624673773Coding
58. (AATT)31246783594678370Non coding
59. (ATCC)31246862404686251Coding
60. (AAAT)31247190524719063Coding
61. (ATTT)31247922254792236Non coding
62. (AATT)31248095574809568Coding
63. (ATTT)31248128334812844Non coding
64. (AAGT)31248899064889917Coding
65. (AAGA)31250112755011286Non coding
66. (AAGC)31250646215064632Non coding
67. (ATTG)31250823465082357Coding
68. (GTAA)31251435285143539Non coding
69. (CAAA)31251549735154984Coding
70. (CCTA)41651738065173821Non coding
71. (TTTG)31253880085388019Coding
72. (CCAC)31254463995446410Coding
73. (TAAA)31255594475559458Non coding
74. (CATC)31256108335610844Coding
75. (TTGA)31256220095622020Coding
76. (AATA)31256552325655243Non coding
77. (TATG)31256977365697747Coding
78. (TCAA)31257069135706924Coding
79. (ATGG)31260096726009683Coding
80. (TATT)31263086556308666Non coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.