CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Calothrix sp. PCC 6303 (NC_019751 6767835 bp)                                                               Show Primer       Download
Compound : 3     Perfect Compound : 3   Overlapping Compound : 0
Perfect      : 263     Density of SSR      : 1SSR/ 25.44 kb   Average length of SSR  : 13.59 bp
Coding      : 189     Non-Coding           : 69   Coding and Non-Coding : 8
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 3 126 99 16 19 263
IMPERFECT 3 212 2272 1866 199 173 4725
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (GCT)4121770317714Coding
2. (ATAA)3122209122102Coding-Non coding
3. (TGA)4125287552886Coding
4. (TGG)4127987179882Coding
5. (TAAA)3129674696757Coding
6. (TGG)412104160104171Coding
7. (ATG)412137565137576Coding
8. (AGC)412196763196774Coding
9. (ATC)412209086209097Coding
10. (CAT)412221224221235Coding
11. (CCA)412227360227371Coding
12. (CAG)412228693228704Coding
13. (GGAT)312254568254579Coding
14. (TCCTTT)318259023259040Non coding
15. (TGA)412269585269596Coding
16. (GTA)412277933277944Coding
17. (GCAA)312304632304643Coding
18. (GTCTCG)424324726324749Non coding
19. (CCA)412370504370515Coding
20. (GGT)412375230375241Coding
21. (TCGA)312401280401291Non coding
22. (TAAA)312452128452139Coding
23. (ACTA)312493153493164Non coding
24. (CAAT)312506516506527Coding
25. (AGTATC)318558970558987Coding
26. (TATCAA)318575232575249Coding
27. (TGG)412577133577144Coding
28. (ACTT)312590282590293Non coding
29. (ATTT)312597242597253Non coding
30. (CCA)412636095636106Coding
31. (TAATCC)318687036687053Coding
32. (CTAA)312750889750900Non coding
33. (CAG)412806514806525Coding
34. (GGGTT)315828515828529Coding
35. (CAG)618832665832682Coding
36. (GTAG)312842331842342Coding-Non coding
37. (GTGA)312899829899840Non coding
38. (TATT)312930188930199Non coding
39. (AACC)312944166944177Coding
40. (ATA)41210347401034751Coding
41. (GTG)61810454141045431Coding
42. (TCA)41210717591071770Coding
43. (TAAT)31210780311078042Non coding
44. (TCT)61810859331085950Coding
45. (ATC)41211574641157475Coding
46. (ACC)41212633361263347Coding
47. (AAAG)31212657231265734Non coding
48. (ATAG)31212856941285705Non coding
49. (CTTA)31212907671290778Coding
50. (AATT)31212978111297822Non coding
51. (TTAA)31213318191331830Non coding
52. (TGG)41213334061333417Coding
53. (TAAA)31213554401355451Non coding
54. (TAATT)31513557311355745Non coding
55. (TTTG)31213954011395412Coding
56. (TATC)31214023031402314Non coding
57. (AAT)41214203821420393Coding
58. (ATTT)31214570811457092Coding
59. (TTAT)31214891381489149Non coding
60. (TTAT)31215009211500932Coding
61. (ATT)41215344521534463Coding
62. (GCT)51515566181556632Coding
63. (TTGT)31215618651561876Coding
64. (TAATT)31516325511632565Non coding
65. (ACA)51516771771677191Coding
66. (TGA)41216917871691798Coding
67. (TCA)61817123691712386Coding
68. (ATC)41217124071712418Coding
69. (AAT)41217319111731922Coding
70. (AAC)41217785341778545Coding
71. (ATTT)31218058361805847Non coding
72. (CATA)31218609461860957Non coding
73. (TAAG)31218768241876835Coding
74. (TGG)41219160711916082Coding
75. (ATC)41219827161982727Coding
76. (ATTG)31219828221982833Coding
77. (CTA)41220516672051678Coding
78. (CAG)41220589582058969Coding
79. (ACT)41220924172092428Coding
80. (TTAT)31221305952130606Non coding
81. (GTTG)31221357012135712Coding
82. (TTGAA)31522427842242798Non coding
83. (CCA)41222478122247823Coding
84. (AGC)41222730712273082Coding
85. (TTAA)31223175472317558Non coding
86. (GCA)41223426402342651Coding
87. (GCA)41223529012352912Coding
88. (TA)61223801322380143Non coding
89. (TGG)41223882062388217Coding
90. (AGACGA)31824056412405658Coding
91. (TCG)41224064262406437Coding
92. (ACTA)31224354032435414Coding
93. (ATT)41224499332449944Coding
94. (AATA)31224721732472184Coding-Non coding
95. (CCT)41224733632473374Non coding
96. (GGGTT)31525196802519694Coding
97. (ATA)41225730802573091Coding
98. (AGG)41226206212620632Coding
99. (CTG)41226649052664916Coding
100. (ATAA)31227731892773200Non coding
101. (CTTA)31227986852798696Coding
102. (AATT)31228243012824312Non coding
103. (TTCA)31228245872824598Non coding
104. (AATT)41628524392852454Non coding
105. (GGGT)31228894382889449Non coding
106. (CCTA)31229721652972176Non coding
107. (AATT)31229876722987683Non coding
108. (TGA)41230413473041358Coding
109. (AAGC)31231197203119731Coding
110. (CCT)41231324203132431Coding
111. (CAC)41231557253155736Coding
112. (AT)81631635793163594Non coding
113. (CCTA)31231812813181292Non coding
114. (TGG)41233484213348432Coding
115. (AATA)31233602623360273Coding
116. (CCTA)31233734493373460Non coding
117. (CAAT)31233787503378761Coding-Non coding
118. (ATT)41234004173400428Non coding
119. (TTG)41234066223406633Coding
120. (CTA)41234129593412970Non coding
121. (GCT)41234261953426206Coding
122. (CTG)41234359943436005Coding
123. (CAG)41234833623483373Coding
124. (TTGTT)31534917413491755Coding
125. (TGC)41235000503500061Coding
126. (TTTA)31235388843538895Non coding
127. (TTG)41235460183546029Coding
128. (AGC)41235549783554989Coding
129. (ATC)51535675773567591Coding
130. (GGT)41235984433598454Coding
131. (CAC)41236076323607643Coding
132. (AGC)41236115323611543Coding
133. (TAA)61837620703762087Non coding
134. (CAA)41238016253801636Coding
135. (ATTA)52038190533819072Non coding
136. (TAA)41238333983833409Non coding
137. (TTCT)31238335673833578Coding
138. (CTG)41238776853877696Coding
139. (CAG)41238786303878641Coding
140. (TGC)61839921843992201Coding
141. (AATT)31240508704050881Coding
142. (GAA)51540891094089123Coding
143. (TGGA)31241168734116884Coding
144. (CTCC)31241321624132173Coding
145. (CAAC)31241359334135944Coding
146. (ACT)41241433304143341Coding
147. (TTG)41241732264173237Coding
148. (CCA)41241960034196014Coding
149. (GTT)41242163954216406Coding
150. (ATCC)31242465544246565Coding
151. (GATC)31242511354251146Coding
152. (ATCC)31242550994255110Coding
153. (ATTT)31242642774264288Coding
154. (GATT)31242691134269124Coding
155. (TAAAC)31542750294275043Coding
156. (TATT)31242767804276791Coding
157. (GAT)41242987384298749Coding
158. (AGA)51543057824305796Coding
159. (GCATG)31543065764306590Non coding
160. (TGGG)31243068264306837Coding
161. (AGC)41243351604335171Coding
162. (TAC)41243532004353211Coding
163. (TGA)41243546674354678Coding
164. (CTG)41243654894365500Coding
165. (AATA)31245108804510891Coding
166. (TGG)41245144954514506Coding
167. (CCATTT)42445184164518439Coding
168. (AGA)41245377374537748Coding
169. (TCT)41245655514565562Coding
170. (GTTT)31245822344582245Coding
171. (TGT)41245865084586519Coding
172. (ATTT)31246088314608842Coding
173. (AGAGAA)31846393224639339Non coding
174. (CTAATC)31846403814640398Coding
175. (TAATCC)31846417844641801Coding
176. (TTTA)31246945624694573Non coding
177. (TTAA)31246972764697287Non coding
178. (TTAA)31247105584710569Coding-Non coding
179. (TGG)51547203944720408Coding
180. (TGG)51547205504720564Coding
181. (TGG)41247206044720615Coding
182. (TGG)51547222874722301Coding
183. (TGG)41247225814722592Coding
184. (GGT)72147227084722728Coding
185. (GTG)41247656634765674Coding
186. (TTG)41247933844793395Coding
187. (CTG)41248310114831022Coding
188. (CTG)41248571714857182Coding
189. (ATAC)31248773864877397Non coding
190. (TAATT)31548806304880644Coding
191. (TCT)41248911064891117Coding
192. (GGT)41249020344902045Coding
193. (ACC)41249267924926803Coding
194. (TAT)41249619064961917Coding
195. (CATT)62449876604987683Non coding
196. (CTTA)31249884494988460Coding
197. (TTAT)41650083415008356Non coding
198. (GGT)41250127725012783Coding
199. (TAAA)31250530395053050Non coding
200. (GAA)41250547475054758Coding
201. (CAAT)31250670965067107Non coding
202. (TTTTA)42050820175082036Non coding
203. (AATT)31251031445103155Coding
204. (CTTA)31251142405114251Coding
205. (TAAT)31251628355162846Non coding
206. (GGT)41251759305175941Coding
207. (CACAGC)31851770875177104Coding
208. (AGC)41252274015227412Coding
209. (TATG)31252284535228464Coding
210. (AACA)31252391735239184Non coding
211. (CTTA)31252551455255156Coding
212. (TGG)41253303355330346Coding
213. (CCA)41253698415369852Coding
214. (TCA)41254050705405081Coding
215. (ATC)61854055245405541Coding
216. (CAAT)31254243695424380Coding
217. (AGA)41254289985429009Coding
218. (GGAA)31254726765472687Coding
219. (ATTTG)31554894365489450Non coding
220. (AAAT)31255534075553418Non coding
221. (GAGC)31255626265562637Coding
222. (TTGA)31255940335594044Coding
223. (TTAT)31256279275627938Non coding
224. (ATATCG)31856389145638931Coding
225. (GTT)41256529895653000Coding
226. (CAC)41256533615653372Coding
227. (ATTA)31256580605658071Coding-Non coding
228. (TCA)41256799625679973Coding
229. (TTTATT)31856863305686347Coding
230. (GTG)41257731595773170Coding
231. (ATAA)31258616945861705Coding
232. (GGT)41258878855887896Coding
233. (CT)61259639855963996Non coding
234. (ATTT)31259805725980583Non coding
235. (GGTTT)31560204856020499Coding
236. (TTAT)31260295786029589Coding
237. (TGG)41260674156067426Coding
238. (AACA)31261030186103029Coding
239. (TATTT)31561355546135568Non coding
240. (GAACCA)42461424606142483Coding
241. (TTGCT)31561763286176342Coding
242. (AGTT)31261843786184389Coding
243. (AATT)31262010326201043Non coding
244. (GCA)41262468416246852Coding
245. (AATCA)42062722756272294Non coding
246. (GTTGGG)31862730776273094Coding
247. (ATCC)31263084516308462Coding
248. (AATA)31263148986314909Non coding
249. (AATTT)31563342476334261Non coding
250. (TAA)41263660746366085Coding
251. (ACC)41263837846383795Coding
252. (GTC)41264019266401937Non coding
253. (GGTTGA)31864228216422838Coding
254. (GCCATC)42464294096429432Coding
255. (CATCGC)31864294476429464Coding
256. (CAC)41264655256465536Coding
257. (AATT)31265291436529154Coding-Non coding
258. (TATTTT)31865812146581231Non coding
259. (AGT)41266033106603321Coding
260. (AATT)31266321956632206Coding
261. (TTG)41266576446657655Coding
262. (TAC)41266660916666102Non coding
263. (CGT)41267394046739415Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.