CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Calothrix sp. PCC 6303 (NC_019751 6767835 bp)                                                               Show Primer       Download
Compound : 3     Perfect Compound : 3   Overlapping Compound : 0
Perfect      : 263     Density of SSR      : 1SSR/ 25.44 kb   Average length of SSR  : 13.59 bp
Coding      : 189     Non-Coding           : 69   Coding and Non-Coding : 8
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 3 126 99 16 19 263
IMPERFECT 3 212 2272 1866 199 173 4725
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (GCT)4121770317714Coding
2. (TGA)4125287552886Coding
3. (TGG)4127987179882Coding
4. (TGG)412104160104171Coding
5. (ATG)412137565137576Coding
6. (AGC)412196763196774Coding
7. (ATC)412209086209097Coding
8. (CAT)412221224221235Coding
9. (CCA)412227360227371Coding
10. (CAG)412228693228704Coding
11. (TGA)412269585269596Coding
12. (GTA)412277933277944Coding
13. (CCA)412370504370515Coding
14. (GGT)412375230375241Coding
15. (TGG)412577133577144Coding
16. (CCA)412636095636106Coding
17. (CAG)412806514806525Coding
18. (CAG)618832665832682Coding
19. (ATA)41210347401034751Coding
20. (GTG)61810454141045431Coding
21. (TCA)41210717591071770Coding
22. (TCT)61810859331085950Coding
23. (ATC)41211574641157475Coding
24. (ACC)41212633361263347Coding
25. (TGG)41213334061333417Coding
26. (AAT)41214203821420393Coding
27. (ATT)41215344521534463Coding
28. (GCT)51515566181556632Coding
29. (ACA)51516771771677191Coding
30. (TGA)41216917871691798Coding
31. (TCA)61817123691712386Coding
32. (ATC)41217124071712418Coding
33. (AAT)41217319111731922Coding
34. (AAC)41217785341778545Coding
35. (TGG)41219160711916082Coding
36. (ATC)41219827161982727Coding
37. (CTA)41220516672051678Coding
38. (CAG)41220589582058969Coding
39. (ACT)41220924172092428Coding
40. (CCA)41222478122247823Coding
41. (AGC)41222730712273082Coding
42. (GCA)41223426402342651Coding
43. (GCA)41223529012352912Coding
44. (TGG)41223882062388217Coding
45. (TCG)41224064262406437Coding
46. (ATT)41224499332449944Coding
47. (CCT)41224733632473374Non coding
48. (ATA)41225730802573091Coding
49. (AGG)41226206212620632Coding
50. (CTG)41226649052664916Coding
51. (TGA)41230413473041358Coding
52. (CCT)41231324203132431Coding
53. (CAC)41231557253155736Coding
54. (TGG)41233484213348432Coding
55. (ATT)41234004173400428Non coding
56. (TTG)41234066223406633Coding
57. (CTA)41234129593412970Non coding
58. (GCT)41234261953426206Coding
59. (CTG)41234359943436005Coding
60. (CAG)41234833623483373Coding
61. (TGC)41235000503500061Coding
62. (TTG)41235460183546029Coding
63. (AGC)41235549783554989Coding
64. (ATC)51535675773567591Coding
65. (GGT)41235984433598454Coding
66. (CAC)41236076323607643Coding
67. (AGC)41236115323611543Coding
68. (TAA)61837620703762087Non coding
69. (CAA)41238016253801636Coding
70. (TAA)41238333983833409Non coding
71. (CTG)41238776853877696Coding
72. (CAG)41238786303878641Coding
73. (TGC)61839921843992201Coding
74. (GAA)51540891094089123Coding
75. (ACT)41241433304143341Coding
76. (TTG)41241732264173237Coding
77. (CCA)41241960034196014Coding
78. (GTT)41242163954216406Coding
79. (GAT)41242987384298749Coding
80. (AGA)51543057824305796Coding
81. (AGC)41243351604335171Coding
82. (TAC)41243532004353211Coding
83. (TGA)41243546674354678Coding
84. (CTG)41243654894365500Coding
85. (TGG)41245144954514506Coding
86. (AGA)41245377374537748Coding
87. (TCT)41245655514565562Coding
88. (TGT)41245865084586519Coding
89. (TGG)51547203944720408Coding
90. (TGG)51547205504720564Coding
91. (TGG)41247206044720615Coding
92. (TGG)51547222874722301Coding
93. (TGG)41247225814722592Coding
94. (GGT)72147227084722728Coding
95. (GTG)41247656634765674Coding
96. (TTG)41247933844793395Coding
97. (CTG)41248310114831022Coding
98. (CTG)41248571714857182Coding
99. (TCT)41248911064891117Coding
100. (GGT)41249020344902045Coding
101. (ACC)41249267924926803Coding
102. (TAT)41249619064961917Coding
103. (GGT)41250127725012783Coding
104. (GAA)41250547475054758Coding
105. (GGT)41251759305175941Coding
106. (AGC)41252274015227412Coding
107. (TGG)41253303355330346Coding
108. (CCA)41253698415369852Coding
109. (TCA)41254050705405081Coding
110. (ATC)61854055245405541Coding
111. (AGA)41254289985429009Coding
112. (GTT)41256529895653000Coding
113. (CAC)41256533615653372Coding
114. (TCA)41256799625679973Coding
115. (GTG)41257731595773170Coding
116. (GGT)41258878855887896Coding
117. (TGG)41260674156067426Coding
118. (GCA)41262468416246852Coding
119. (TAA)41263660746366085Coding
120. (ACC)41263837846383795Coding
121. (GTC)41264019266401937Non coding
122. (CAC)41264655256465536Coding
123. (AGT)41266033106603321Coding
124. (TTG)41266576446657655Coding
125. (TAC)41266660916666102Non coding
126. (CGT)41267394046739415Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.