CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Calothrix sp. PCC 6303 (NC_019751 6767835 bp)                                                               Show Primer       Download
Compound : 3     Perfect Compound : 3   Overlapping Compound : 0
Perfect      : 263     Density of SSR      : 1SSR/ 25.44 kb   Average length of SSR  : 13.59 bp
Coding      : 189     Non-Coding           : 69   Coding and Non-Coding : 8
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 3 126 99 16 19 263
IMPERFECT 3 212 2272 1866 199 173 4725
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (ATAA)3122209122102Coding-Non coding
2. (TAAA)3129674696757Coding
3. (GGAT)312254568254579Coding
4. (GCAA)312304632304643Coding
5. (TCGA)312401280401291Non coding
6. (TAAA)312452128452139Coding
7. (ACTA)312493153493164Non coding
8. (CAAT)312506516506527Coding
9. (ACTT)312590282590293Non coding
10. (ATTT)312597242597253Non coding
11. (CTAA)312750889750900Non coding
12. (GTAG)312842331842342Coding-Non coding
13. (GTGA)312899829899840Non coding
14. (TATT)312930188930199Non coding
15. (AACC)312944166944177Coding
16. (TAAT)31210780311078042Non coding
17. (AAAG)31212657231265734Non coding
18. (ATAG)31212856941285705Non coding
19. (CTTA)31212907671290778Coding
20. (AATT)31212978111297822Non coding
21. (TTAA)31213318191331830Non coding
22. (TAAA)31213554401355451Non coding
23. (TTTG)31213954011395412Coding
24. (TATC)31214023031402314Non coding
25. (ATTT)31214570811457092Coding
26. (TTAT)31214891381489149Non coding
27. (TTAT)31215009211500932Coding
28. (TTGT)31215618651561876Coding
29. (ATTT)31218058361805847Non coding
30. (CATA)31218609461860957Non coding
31. (TAAG)31218768241876835Coding
32. (ATTG)31219828221982833Coding
33. (TTAT)31221305952130606Non coding
34. (GTTG)31221357012135712Coding
35. (TTAA)31223175472317558Non coding
36. (ACTA)31224354032435414Coding
37. (AATA)31224721732472184Coding-Non coding
38. (ATAA)31227731892773200Non coding
39. (CTTA)31227986852798696Coding
40. (AATT)31228243012824312Non coding
41. (TTCA)31228245872824598Non coding
42. (AATT)41628524392852454Non coding
43. (GGGT)31228894382889449Non coding
44. (CCTA)31229721652972176Non coding
45. (AATT)31229876722987683Non coding
46. (AAGC)31231197203119731Coding
47. (CCTA)31231812813181292Non coding
48. (AATA)31233602623360273Coding
49. (CCTA)31233734493373460Non coding
50. (CAAT)31233787503378761Coding-Non coding
51. (TTTA)31235388843538895Non coding
52. (ATTA)52038190533819072Non coding
53. (TTCT)31238335673833578Coding
54. (AATT)31240508704050881Coding
55. (TGGA)31241168734116884Coding
56. (CTCC)31241321624132173Coding
57. (CAAC)31241359334135944Coding
58. (ATCC)31242465544246565Coding
59. (GATC)31242511354251146Coding
60. (ATCC)31242550994255110Coding
61. (ATTT)31242642774264288Coding
62. (GATT)31242691134269124Coding
63. (TATT)31242767804276791Coding
64. (TGGG)31243068264306837Coding
65. (AATA)31245108804510891Coding
66. (GTTT)31245822344582245Coding
67. (ATTT)31246088314608842Coding
68. (TTTA)31246945624694573Non coding
69. (TTAA)31246972764697287Non coding
70. (TTAA)31247105584710569Coding-Non coding
71. (ATAC)31248773864877397Non coding
72. (CATT)62449876604987683Non coding
73. (CTTA)31249884494988460Coding
74. (TTAT)41650083415008356Non coding
75. (TAAA)31250530395053050Non coding
76. (CAAT)31250670965067107Non coding
77. (AATT)31251031445103155Coding
78. (CTTA)31251142405114251Coding
79. (TAAT)31251628355162846Non coding
80. (TATG)31252284535228464Coding
81. (AACA)31252391735239184Non coding
82. (CTTA)31252551455255156Coding
83. (CAAT)31254243695424380Coding
84. (GGAA)31254726765472687Coding
85. (AAAT)31255534075553418Non coding
86. (GAGC)31255626265562637Coding
87. (TTGA)31255940335594044Coding
88. (TTAT)31256279275627938Non coding
89. (ATTA)31256580605658071Coding-Non coding
90. (ATAA)31258616945861705Coding
91. (ATTT)31259805725980583Non coding
92. (TTAT)31260295786029589Coding
93. (AACA)31261030186103029Coding
94. (AGTT)31261843786184389Coding
95. (AATT)31262010326201043Non coding
96. (ATCC)31263084516308462Coding
97. (AATA)31263148986314909Non coding
98. (AATT)31265291436529154Coding-Non coding
99. (AATT)31266321956632206Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.