CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Calothrix sp. PCC 7507 (NC_019682 7023216 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 238     Density of SSR      : 1SSR/ 29.51 kb   Average length of SSR  : 12.54 bp
Coding      : 192     Non-Coding           : 42   Coding and Non-Coding : 4
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 0 130 95 6 7 238
IMPERFECT 0 211 2130 1851 188 149 4529
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (GGT)41224432454Coding
2. (ACACC)3154364643660Non coding
3. (GCCAC)3155151151525Coding
4. (ATC)4126907169082Coding
5. (TGTC)4167658176596Coding
6. (ACCA)3128040980420Non coding
7. (ACAA)3128877288783Coding
8. (CAGA)312104655104666Non coding
9. (TTTTCT)318163462163479Non coding
10. (AATG)312179746179757Non coding
11. (GAT)412195905195916Coding
12. (GTTA)312293660293671Coding
13. (CAC)412295181295192Coding
14. (TGA)515308068308082Coding
15. (CAG)412331000331011Coding
16. (CCA)412331059331070Coding
17. (ATG)412343556343567Coding
18. (GACT)312362660362671Coding
19. (TTG)412366714366725Coding
20. (GGC)412428741428752Coding
21. (TCTG)312436602436613Coding
22. (TTTA)312557374557385Non coding
23. (AAT)412664686664697Coding
24. (CGC)412689437689448Coding
25. (CTTG)312740337740348Coding
26. (GTAA)312773080773091Coding
27. (TCTA)312827306827317Non coding
28. (TTTG)312911609911620Non coding
29. (TCA)412928203928214Coding
30. (GGT)412955772955783Coding
31. (TGA)41210756231075634Coding
32. (AAGC)31211022571102268Coding
33. (GGC)41211088291108840Coding
34. (GTAA)31211395281139539Non coding
35. (AGAT)31211540241154035Non coding
36. (TCAT)31211807741180785Coding
37. (ATGA)31212218841221895Coding
38. (AATC)41612240701224085Coding
39. (CCA)41212968321296843Coding
40. (CAG)41213705971370608Coding
41. (AGA)41213927001392711Coding
42. (GTTT)31214375021437513Coding
43. (TTGT)31214375331437544Coding
44. (TAGC)31214403811440392Coding-Non coding
45. (TCTA)31214657191465730Non coding
46. (CAG)41214758081475819Coding
47. (GAT)61815141981514215Coding
48. (CCG)41215788871578898Coding
49. (TGGCT)31516492041649218Coding
50. (CAA)51516543341654348Coding
51. (GCT)41216606631660674Coding
52. (AAAT)31216739881673999Coding
53. (TAA)41217291401729151Coding
54. (ACC)41217303251730336Coding
55. (CTTA)31217901001790111Non coding
56. (TCT)41217953021795313Coding
57. (CCG)51518193241819338Coding
58. (TAA)41218671721867183Non coding
59. (AAAG)31219201471920158Coding
60. (ATG)41219460721946083Coding
61. (TTTA)31219685431968554Non coding
62. (TTTG)31219751231975134Coding
63. (CGTTGG)42420260902026113Coding
64. (CAG)41220565052056516Coding
65. (CAG)41220661692066180Coding
66. (GAT)41220707532070764Coding
67. (GCTT)31220968432096854Coding
68. (TGT)41221069192106930Coding
69. (CCTA)41621546362154651Non coding
70. (ACC)41221584392158450Coding
71. (AGT)41222060102206021Non coding
72. (ATC)41222218802221891Coding
73. (ATC)41222218952221906Coding
74. (ATC)41222219102221921Coding
75. (CTAA)31222843132284324Coding
76. (CAA)41222917002291711Coding
77. (GAT)51523094912309505Coding
78. (TATG)31223226272322638Coding
79. (ATTT)31223272452327256Coding
80. (GTG)41223742942374305Coding
81. (TGG)41224264732426484Coding
82. (AGC)41224560492456060Coding
83. (AGC)41224874142487425Coding
84. (TGC)41225225962522607Coding
85. (ATAG)31225323732532384Non coding
86. (TAAA)31225497882549799Non coding
87. (CAA)41225637222563733Non coding
88. (CAG)41225708652570876Coding
89. (GCT)41225910532591064Coding
90. (AAGG)31226492142649225Coding
91. (AGC)41226843312684342Coding
92. (TGAG)31227011702701181Coding
93. (ATTT)31227165922716603Coding
94. (TGGT)31227309442730955Coding
95. (GTTT)31227542392754250Coding
96. (GTTG)31228063842806395Coding
97. (CCG)41228111882811199Coding
98. (TGC)41228476212847632Coding
99. (ACTC)31229006252900636Non coding
100. (AGG)41229042032904214Non coding
101. (ATC)41229129092912920Coding
102. (TGC)41229377302937741Coding
103. (TAAA)31230212993021310Non coding
104. (TACT)31230431443043155Coding
105. (AGTA)31231330603133071Coding
106. (TTC)41231931653193176Coding
107. (TGG)41232369963237007Coding
108. (CTGG)31232370143237025Coding
109. (TGGT)31232419963242007Coding
110. (CTGGTG)31832613733261390Coding
111. (CACC)31233145643314575Non coding
112. (ATAA)31233232803323291Coding
113. (CGACGG)31833470753347092Coding
114. (GGTT)31233564963356507Coding
115. (GGA)41233685833368594Non coding
116. (TGG)41234250933425104Coding
117. (ACT)41234412523441263Coding
118. (CTG)41234638103463821Coding
119. (ATTT)31234930073493018Coding
120. (TGTT)31235264623526473Coding
121. (ACA)41235560093556020Coding
122. (TTG)41235852503585261Non coding
123. (GCT)41236136673613678Coding
124. (TGG)41236156853615696Coding
125. (CTA)41236541783654189Non coding
126. (GGAA)31236582073658218Coding
127. (TGG)51536742923674306Coding
128. (TGT)41236867563686767Coding
129. (GCA)41237059313705942Coding
130. (GTT)41237267353726746Coding
131. (CAG)41237483263748337Coding
132. (GCGGCT)31837587233758740Coding
133. (GGTA)31237699263769937Coding
134. (TGG)41237835563783567Coding
135. (TAAT)31239149183914929Coding
136. (CGA)41239992723999283Coding
137. (CAC)41240067294006740Coding
138. (ATTT)31240452254045236Coding
139. (GCA)51540940804094094Coding
140. (ATTT)31241084664108477Non coding
141. (TAGA)31241544834154494Non coding
142. (TGG)41241687444168755Coding
143. (TGA)41241808994180910Coding
144. (TGC)41242039724203983Coding
145. (CAG)41242072674207278Coding
146. (GGC)41242529514252962Coding
147. (TGGA)31242572184257229Coding
148. (TGG)41242663994266410Coding
149. (TGC)41242732544273265Coding
150. (GTA)82442791424279165Coding
151. (CAA)41243902724390283Coding
152. (TCA)41244224904422501Coding
153. (AAAT)31244524544452465Coding-Non coding
154. (CGC)41244824074482418Coding
155. (TACT)31244979874497998Coding
156. (TTGG)31245828034582814Coding
157. (CTGG)31245869134586924Coding
158. (GCC)41246497494649760Coding
159. (TATT)31246609114660922Non coding
160. (CAC)41247045014704512Coding
161. (ACTT)31247187434718754Non coding
162. (TGG)41247192394719250Coding
163. (AGC)41247378694737880Coding
164. (AAT)41247711894771200Non coding
165. (CGG)41248118484811859Coding
166. (GGC)51548361144836128Coding
167. (TAAA)31249269944927005Coding
168. (GCC)41249333834933394Coding
169. (GGT)41249580894958100Coding
170. (CAAC)31250602495060260Coding
171. (TTTA)31251465225146533Coding
172. (TTCA)31251631945163205Coding
173. (ACT)41251685805168591Coding
174. (CCAG)31251786875178698Coding
175. (CTA)41252327435232754Coding
176. (TGC)41252934535293464Coding
177. (CAG)41253332775333288Coding
178. (GAC)41253397395339750Coding
179. (GCA)41254429115442922Coding
180. (TAAA)31255152295515240Non coding
181. (CCTT)31255715795571590Coding
182. (GCAA)31256040625604073Coding
183. (CCAA)31256065435606554Coding
184. (TGGG)31256219815621992Coding
185. (TTTA)31256308545630865Coding
186. (GCA)41256773955677406Coding
187. (AAGC)31256808215680832Coding
188. (TGG)41256839705683981Coding
189. (TAAG)31256869595686970Non coding
190. (TTG)41257008295700840Coding
191. (AATC)31257861095786120Coding
192. (AATA)31258404045840415Non coding
193. (GCT)41258537925853803Coding
194. (GGCG)31258650935865104Coding
195. (TTGA)31259163895916400Coding
196. (CAAA)31259486655948676Coding
197. (CTT)41259712835971294Non coding
198. (CCA)41259851585985169Coding
199. (CGC)41260190476019058Coding
200. (AAC)41260905986090609Coding
201. (CAC)41261103286110339Coding
202. (AATT)31261800656180076Non coding
203. (TTTC)31261811576181168Coding
204. (GAA)41262557716255782Coding
205. (GCT)41262740436274054Coding
206. (TTTA)31262811176281128Non coding
207. (TAAG)31262967086296719Coding-Non coding
208. (ATTTC)31563356546335668Coding-Non coding
209. (AAGT)31263537486353759Non coding
210. (TTG)41263570446357055Coding
211. (TCA)41263952966395307Coding
212. (ATAA)31264097476409758Coding
213. (GTTGGT)42464368346436857Coding
214. (CTG)41264519716451982Coding
215. (ACA)41264708936470904Coding
216. (GCTGAT)31864718936471910Coding
217. (GGAG)31264755456475556Coding
218. (TTTC)31264781896478200Non coding
219. (CGC)41265030846503095Coding
220. (GGT)51565341776534191Coding
221. (AAAT)31265766016576612Coding
222. (GTT)41265784706578481Coding
223. (AGGGG)31566267796626793Non coding
224. (CAG)41266359006635911Coding
225. (CAA)41266836036683614Coding
226. (CAA)41266865396686550Coding
227. (AGC)41267194326719443Coding
228. (TTC)41267658716765882Coding
229. (TCC)41267950216795032Coding
230. (TTTG)31268556366855647Non coding
231. (TCA)51568576206857634Coding
232. (CAAAC)31568785806878594Coding
233. (GCA)41268863516886362Coding
234. (GGT)41268995826899593Coding
235. (ATAA)31269023906902401Non coding
236. (GTGA)31269208586920869Coding
237. (GCG)41269387566938767Coding
238. (CTG)41269928656992876Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.