CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Calothrix sp. PCC 7507 (NC_019682 7023216 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 238     Density of SSR      : 1SSR/ 29.51 kb   Average length of SSR  : 12.54 bp
Coding      : 192     Non-Coding           : 42   Coding and Non-Coding : 4
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 0 130 95 6 7 238
IMPERFECT 0 211 2130 1851 188 149 4529
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (GGT)41224432454Coding
2. (ATC)4126907169082Coding
3. (GAT)412195905195916Coding
4. (CAC)412295181295192Coding
5. (TGA)515308068308082Coding
6. (CAG)412331000331011Coding
7. (CCA)412331059331070Coding
8. (ATG)412343556343567Coding
9. (TTG)412366714366725Coding
10. (GGC)412428741428752Coding
11. (AAT)412664686664697Coding
12. (CGC)412689437689448Coding
13. (TCA)412928203928214Coding
14. (GGT)412955772955783Coding
15. (TGA)41210756231075634Coding
16. (GGC)41211088291108840Coding
17. (CCA)41212968321296843Coding
18. (CAG)41213705971370608Coding
19. (AGA)41213927001392711Coding
20. (CAG)41214758081475819Coding
21. (GAT)61815141981514215Coding
22. (CCG)41215788871578898Coding
23. (CAA)51516543341654348Coding
24. (GCT)41216606631660674Coding
25. (TAA)41217291401729151Coding
26. (ACC)41217303251730336Coding
27. (TCT)41217953021795313Coding
28. (CCG)51518193241819338Coding
29. (TAA)41218671721867183Non coding
30. (ATG)41219460721946083Coding
31. (CAG)41220565052056516Coding
32. (CAG)41220661692066180Coding
33. (GAT)41220707532070764Coding
34. (TGT)41221069192106930Coding
35. (ACC)41221584392158450Coding
36. (AGT)41222060102206021Non coding
37. (ATC)41222218802221891Coding
38. (ATC)41222218952221906Coding
39. (ATC)41222219102221921Coding
40. (CAA)41222917002291711Coding
41. (GAT)51523094912309505Coding
42. (GTG)41223742942374305Coding
43. (TGG)41224264732426484Coding
44. (AGC)41224560492456060Coding
45. (AGC)41224874142487425Coding
46. (TGC)41225225962522607Coding
47. (CAA)41225637222563733Non coding
48. (CAG)41225708652570876Coding
49. (GCT)41225910532591064Coding
50. (AGC)41226843312684342Coding
51. (CCG)41228111882811199Coding
52. (TGC)41228476212847632Coding
53. (AGG)41229042032904214Non coding
54. (ATC)41229129092912920Coding
55. (TGC)41229377302937741Coding
56. (TTC)41231931653193176Coding
57. (TGG)41232369963237007Coding
58. (GGA)41233685833368594Non coding
59. (TGG)41234250933425104Coding
60. (ACT)41234412523441263Coding
61. (CTG)41234638103463821Coding
62. (ACA)41235560093556020Coding
63. (TTG)41235852503585261Non coding
64. (GCT)41236136673613678Coding
65. (TGG)41236156853615696Coding
66. (CTA)41236541783654189Non coding
67. (TGG)51536742923674306Coding
68. (TGT)41236867563686767Coding
69. (GCA)41237059313705942Coding
70. (GTT)41237267353726746Coding
71. (CAG)41237483263748337Coding
72. (TGG)41237835563783567Coding
73. (CGA)41239992723999283Coding
74. (CAC)41240067294006740Coding
75. (GCA)51540940804094094Coding
76. (TGG)41241687444168755Coding
77. (TGA)41241808994180910Coding
78. (TGC)41242039724203983Coding
79. (CAG)41242072674207278Coding
80. (GGC)41242529514252962Coding
81. (TGG)41242663994266410Coding
82. (TGC)41242732544273265Coding
83. (GTA)82442791424279165Coding
84. (CAA)41243902724390283Coding
85. (TCA)41244224904422501Coding
86. (CGC)41244824074482418Coding
87. (GCC)41246497494649760Coding
88. (CAC)41247045014704512Coding
89. (TGG)41247192394719250Coding
90. (AGC)41247378694737880Coding
91. (AAT)41247711894771200Non coding
92. (CGG)41248118484811859Coding
93. (GGC)51548361144836128Coding
94. (GCC)41249333834933394Coding
95. (GGT)41249580894958100Coding
96. (ACT)41251685805168591Coding
97. (CTA)41252327435232754Coding
98. (TGC)41252934535293464Coding
99. (CAG)41253332775333288Coding
100. (GAC)41253397395339750Coding
101. (GCA)41254429115442922Coding
102. (GCA)41256773955677406Coding
103. (TGG)41256839705683981Coding
104. (TTG)41257008295700840Coding
105. (GCT)41258537925853803Coding
106. (CTT)41259712835971294Non coding
107. (CCA)41259851585985169Coding
108. (CGC)41260190476019058Coding
109. (AAC)41260905986090609Coding
110. (CAC)41261103286110339Coding
111. (GAA)41262557716255782Coding
112. (GCT)41262740436274054Coding
113. (TTG)41263570446357055Coding
114. (TCA)41263952966395307Coding
115. (CTG)41264519716451982Coding
116. (ACA)41264708936470904Coding
117. (CGC)41265030846503095Coding
118. (GGT)51565341776534191Coding
119. (GTT)41265784706578481Coding
120. (CAG)41266359006635911Coding
121. (CAA)41266836036683614Coding
122. (CAA)41266865396686550Coding
123. (AGC)41267194326719443Coding
124. (TTC)41267658716765882Coding
125. (TCC)41267950216795032Coding
126. (TCA)51568576206857634Coding
127. (GCA)41268863516886362Coding
128. (GGT)41268995826899593Coding
129. (GCG)41269387566938767Coding
130. (CTG)41269928656992876Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.