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Organism:
Calothrix sp. PCC 7507
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(NC_019682 , 7023216 bp)
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Show Primer
Download
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Compound
:
0
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Perfect Compound
:
0
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Overlapping Compound
:
0
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Perfect
:
238
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Density of SSR
:
1SSR/
29.51
kb
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Average length of SSR
:
12.54
bp
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Coding
:
192
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Non-Coding
:
42
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Coding and Non-Coding
:
4
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| REPEAT | MONO | DI | TRI | TETRA | PENTA | HEXA | TOTAL |
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PERFECT
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0
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0
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130
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95
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6
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7
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238
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Perfect SSRs
| S. No. | MOTIF | LENGTH | START | END | REGION |
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1.
| (TGTC)4 | 16 | 76581 | 76596 | Coding |
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2.
| (ACCA)3 | 12 | 80409 | 80420 | Non coding |
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3.
| (ACAA)3 | 12 | 88772 | 88783 | Coding |
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4.
| (CAGA)3 | 12 | 104655 | 104666 | Non coding |
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5.
| (AATG)3 | 12 | 179746 | 179757 | Non coding |
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6.
| (GTTA)3 | 12 | 293660 | 293671 | Coding |
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7.
| (GACT)3 | 12 | 362660 | 362671 | Coding |
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8.
| (TCTG)3 | 12 | 436602 | 436613 | Coding |
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9.
| (TTTA)3 | 12 | 557374 | 557385 | Non coding |
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10.
| (CTTG)3 | 12 | 740337 | 740348 | Coding |
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11.
| (GTAA)3 | 12 | 773080 | 773091 | Coding |
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12.
| (TCTA)3 | 12 | 827306 | 827317 | Non coding |
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13.
| (TTTG)3 | 12 | 911609 | 911620 | Non coding |
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14.
| (AAGC)3 | 12 | 1102257 | 1102268 | Coding |
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15.
| (GTAA)3 | 12 | 1139528 | 1139539 | Non coding |
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16.
| (AGAT)3 | 12 | 1154024 | 1154035 | Non coding |
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17.
| (TCAT)3 | 12 | 1180774 | 1180785 | Coding |
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18.
| (ATGA)3 | 12 | 1221884 | 1221895 | Coding |
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19.
| (AATC)4 | 16 | 1224070 | 1224085 | Coding |
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20.
| (GTTT)3 | 12 | 1437502 | 1437513 | Coding |
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21.
| (TTGT)3 | 12 | 1437533 | 1437544 | Coding |
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22.
| (TAGC)3 | 12 | 1440381 | 1440392 | Coding-Non coding |
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23.
| (TCTA)3 | 12 | 1465719 | 1465730 | Non coding |
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24.
| (AAAT)3 | 12 | 1673988 | 1673999 | Coding |
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25.
| (CTTA)3 | 12 | 1790100 | 1790111 | Non coding |
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26.
| (AAAG)3 | 12 | 1920147 | 1920158 | Coding |
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27.
| (TTTA)3 | 12 | 1968543 | 1968554 | Non coding |
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28.
| (TTTG)3 | 12 | 1975123 | 1975134 | Coding |
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29.
| (GCTT)3 | 12 | 2096843 | 2096854 | Coding |
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30.
| (CCTA)4 | 16 | 2154636 | 2154651 | Non coding |
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31.
| (CTAA)3 | 12 | 2284313 | 2284324 | Coding |
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32.
| (TATG)3 | 12 | 2322627 | 2322638 | Coding |
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33.
| (ATTT)3 | 12 | 2327245 | 2327256 | Coding |
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34.
| (ATAG)3 | 12 | 2532373 | 2532384 | Non coding |
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35.
| (TAAA)3 | 12 | 2549788 | 2549799 | Non coding |
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36.
| (AAGG)3 | 12 | 2649214 | 2649225 | Coding |
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37.
| (TGAG)3 | 12 | 2701170 | 2701181 | Coding |
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38.
| (ATTT)3 | 12 | 2716592 | 2716603 | Coding |
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39.
| (TGGT)3 | 12 | 2730944 | 2730955 | Coding |
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40.
| (GTTT)3 | 12 | 2754239 | 2754250 | Coding |
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41.
| (GTTG)3 | 12 | 2806384 | 2806395 | Coding |
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42.
| (ACTC)3 | 12 | 2900625 | 2900636 | Non coding |
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43.
| (TAAA)3 | 12 | 3021299 | 3021310 | Non coding |
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44.
| (TACT)3 | 12 | 3043144 | 3043155 | Coding |
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45.
| (AGTA)3 | 12 | 3133060 | 3133071 | Coding |
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46.
| (CTGG)3 | 12 | 3237014 | 3237025 | Coding |
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47.
| (TGGT)3 | 12 | 3241996 | 3242007 | Coding |
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48.
| (CACC)3 | 12 | 3314564 | 3314575 | Non coding |
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49.
| (ATAA)3 | 12 | 3323280 | 3323291 | Coding |
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50.
| (GGTT)3 | 12 | 3356496 | 3356507 | Coding |
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51.
| (ATTT)3 | 12 | 3493007 | 3493018 | Coding |
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52.
| (TGTT)3 | 12 | 3526462 | 3526473 | Coding |
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53.
| (GGAA)3 | 12 | 3658207 | 3658218 | Coding |
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54.
| (GGTA)3 | 12 | 3769926 | 3769937 | Coding |
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55.
| (TAAT)3 | 12 | 3914918 | 3914929 | Coding |
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56.
| (ATTT)3 | 12 | 4045225 | 4045236 | Coding |
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57.
| (ATTT)3 | 12 | 4108466 | 4108477 | Non coding |
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58.
| (TAGA)3 | 12 | 4154483 | 4154494 | Non coding |
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59.
| (TGGA)3 | 12 | 4257218 | 4257229 | Coding |
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60.
| (AAAT)3 | 12 | 4452454 | 4452465 | Coding-Non coding |
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61.
| (TACT)3 | 12 | 4497987 | 4497998 | Coding |
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62.
| (TTGG)3 | 12 | 4582803 | 4582814 | Coding |
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63.
| (CTGG)3 | 12 | 4586913 | 4586924 | Coding |
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64.
| (TATT)3 | 12 | 4660911 | 4660922 | Non coding |
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65.
| (ACTT)3 | 12 | 4718743 | 4718754 | Non coding |
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66.
| (TAAA)3 | 12 | 4926994 | 4927005 | Coding |
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67.
| (CAAC)3 | 12 | 5060249 | 5060260 | Coding |
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68.
| (TTTA)3 | 12 | 5146522 | 5146533 | Coding |
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69.
| (TTCA)3 | 12 | 5163194 | 5163205 | Coding |
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70.
| (CCAG)3 | 12 | 5178687 | 5178698 | Coding |
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71.
| (TAAA)3 | 12 | 5515229 | 5515240 | Non coding |
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72.
| (CCTT)3 | 12 | 5571579 | 5571590 | Coding |
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73.
| (GCAA)3 | 12 | 5604062 | 5604073 | Coding |
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74.
| (CCAA)3 | 12 | 5606543 | 5606554 | Coding |
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75.
| (TGGG)3 | 12 | 5621981 | 5621992 | Coding |
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76.
| (TTTA)3 | 12 | 5630854 | 5630865 | Coding |
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77.
| (AAGC)3 | 12 | 5680821 | 5680832 | Coding |
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78.
| (TAAG)3 | 12 | 5686959 | 5686970 | Non coding |
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79.
| (AATC)3 | 12 | 5786109 | 5786120 | Coding |
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80.
| (AATA)3 | 12 | 5840404 | 5840415 | Non coding |
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81.
| (GGCG)3 | 12 | 5865093 | 5865104 | Coding |
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82.
| (TTGA)3 | 12 | 5916389 | 5916400 | Coding |
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83.
| (CAAA)3 | 12 | 5948665 | 5948676 | Coding |
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84.
| (AATT)3 | 12 | 6180065 | 6180076 | Non coding |
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85.
| (TTTC)3 | 12 | 6181157 | 6181168 | Coding |
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86.
| (TTTA)3 | 12 | 6281117 | 6281128 | Non coding |
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87.
| (TAAG)3 | 12 | 6296708 | 6296719 | Coding-Non coding |
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88.
| (AAGT)3 | 12 | 6353748 | 6353759 | Non coding |
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89.
| (ATAA)3 | 12 | 6409747 | 6409758 | Coding |
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90.
| (GGAG)3 | 12 | 6475545 | 6475556 | Coding |
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91.
| (TTTC)3 | 12 | 6478189 | 6478200 | Non coding |
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92.
| (AAAT)3 | 12 | 6576601 | 6576612 | Coding |
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93.
| (TTTG)3 | 12 | 6855636 | 6855647 | Non coding |
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94.
| (ATAA)3 | 12 | 6902390 | 6902401 | Non coding |
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95.
| (GTGA)3 | 12 | 6920858 | 6920869 | Coding |
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Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71
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