CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Calothrix sp. PCC 7507 (NC_019682 7023216 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 238     Density of SSR      : 1SSR/ 29.51 kb   Average length of SSR  : 12.54 bp
Coding      : 192     Non-Coding           : 42   Coding and Non-Coding : 4
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 0 130 95 6 7 238
IMPERFECT 0 211 2130 1851 188 149 4529
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (TGTC)4167658176596Coding
2. (ACCA)3128040980420Non coding
3. (ACAA)3128877288783Coding
4. (CAGA)312104655104666Non coding
5. (AATG)312179746179757Non coding
6. (GTTA)312293660293671Coding
7. (GACT)312362660362671Coding
8. (TCTG)312436602436613Coding
9. (TTTA)312557374557385Non coding
10. (CTTG)312740337740348Coding
11. (GTAA)312773080773091Coding
12. (TCTA)312827306827317Non coding
13. (TTTG)312911609911620Non coding
14. (AAGC)31211022571102268Coding
15. (GTAA)31211395281139539Non coding
16. (AGAT)31211540241154035Non coding
17. (TCAT)31211807741180785Coding
18. (ATGA)31212218841221895Coding
19. (AATC)41612240701224085Coding
20. (GTTT)31214375021437513Coding
21. (TTGT)31214375331437544Coding
22. (TAGC)31214403811440392Coding-Non coding
23. (TCTA)31214657191465730Non coding
24. (AAAT)31216739881673999Coding
25. (CTTA)31217901001790111Non coding
26. (AAAG)31219201471920158Coding
27. (TTTA)31219685431968554Non coding
28. (TTTG)31219751231975134Coding
29. (GCTT)31220968432096854Coding
30. (CCTA)41621546362154651Non coding
31. (CTAA)31222843132284324Coding
32. (TATG)31223226272322638Coding
33. (ATTT)31223272452327256Coding
34. (ATAG)31225323732532384Non coding
35. (TAAA)31225497882549799Non coding
36. (AAGG)31226492142649225Coding
37. (TGAG)31227011702701181Coding
38. (ATTT)31227165922716603Coding
39. (TGGT)31227309442730955Coding
40. (GTTT)31227542392754250Coding
41. (GTTG)31228063842806395Coding
42. (ACTC)31229006252900636Non coding
43. (TAAA)31230212993021310Non coding
44. (TACT)31230431443043155Coding
45. (AGTA)31231330603133071Coding
46. (CTGG)31232370143237025Coding
47. (TGGT)31232419963242007Coding
48. (CACC)31233145643314575Non coding
49. (ATAA)31233232803323291Coding
50. (GGTT)31233564963356507Coding
51. (ATTT)31234930073493018Coding
52. (TGTT)31235264623526473Coding
53. (GGAA)31236582073658218Coding
54. (GGTA)31237699263769937Coding
55. (TAAT)31239149183914929Coding
56. (ATTT)31240452254045236Coding
57. (ATTT)31241084664108477Non coding
58. (TAGA)31241544834154494Non coding
59. (TGGA)31242572184257229Coding
60. (AAAT)31244524544452465Coding-Non coding
61. (TACT)31244979874497998Coding
62. (TTGG)31245828034582814Coding
63. (CTGG)31245869134586924Coding
64. (TATT)31246609114660922Non coding
65. (ACTT)31247187434718754Non coding
66. (TAAA)31249269944927005Coding
67. (CAAC)31250602495060260Coding
68. (TTTA)31251465225146533Coding
69. (TTCA)31251631945163205Coding
70. (CCAG)31251786875178698Coding
71. (TAAA)31255152295515240Non coding
72. (CCTT)31255715795571590Coding
73. (GCAA)31256040625604073Coding
74. (CCAA)31256065435606554Coding
75. (TGGG)31256219815621992Coding
76. (TTTA)31256308545630865Coding
77. (AAGC)31256808215680832Coding
78. (TAAG)31256869595686970Non coding
79. (AATC)31257861095786120Coding
80. (AATA)31258404045840415Non coding
81. (GGCG)31258650935865104Coding
82. (TTGA)31259163895916400Coding
83. (CAAA)31259486655948676Coding
84. (AATT)31261800656180076Non coding
85. (TTTC)31261811576181168Coding
86. (TTTA)31262811176281128Non coding
87. (TAAG)31262967086296719Coding-Non coding
88. (AAGT)31263537486353759Non coding
89. (ATAA)31264097476409758Coding
90. (GGAG)31264755456475556Coding
91. (TTTC)31264781896478200Non coding
92. (AAAT)31265766016576612Coding
93. (TTTG)31268556366855647Non coding
94. (ATAA)31269023906902401Non coding
95. (GTGA)31269208586920869Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.