CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Chamaesiphon minutus PCC 6605 (NC_019697 6284096 bp)                                                               Show Primer       Download
Compound : 1     Perfect Compound : 1   Overlapping Compound : 0
Perfect      : 547     Density of SSR      : 1SSR/ 11.47 kb   Average length of SSR  : 12.99 bp
Coding      : 387     Non-Coding           : 153   Coding and Non-Coding : 8
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 2 112 373 42 18 547
IMPERFECT 0 170 1700 2209 214 183 4476
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (CAAGCT)318238467238484Coding
2. (GGTGGC)424879459879482Coding
3. (TTCGCG)318898576898593Non coding
4. (GGTGGC)318984611984628Coding
5. (ACGACC)31817470361747053Coding
6. (CAACAT)31822578322257849Coding
7. (AGACCA)31825203612520378Coding
8. (AATGGC)31829537102953727Coding
9. (GCGATG)31832035393203556Coding
10. (CTACAC)31836756493675666Coding
11. (CGCGAA)31841731144173131Coding
12. (GATGCC)31844839754483992Coding
13. (GGAGTC)31850950585095075Coding
14. (GCCGCA)31851572885157305Coding
15. (GCTGAA)31854454515445468Coding
16. (GGCGAT)31856210735621090Coding
17. (GGTGGC)31857107145710731Coding
18. (TAGGCT)31858386485838665Non coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.