| |
Organism:
Chamaesiphon minutus PCC 6605
|
(NC_019697 , 6284096 bp)
|
|
Show Primer
Download
|
|
Compound
:
1
|
Perfect Compound
:
1
|
Overlapping Compound
:
0
|
|
Perfect
:
547
|
Density of SSR
:
1SSR/
11.47
kb
|
Average length of SSR
:
12.99
bp
|
|
Coding
:
387
|
Non-Coding
:
153
|
Coding and Non-Coding
:
8
|
|
Perfect SSRs
| S. No. | MOTIF | LENGTH | START | END | REGION |
|
1.
| (CGAT)3 | 12 | 28368 | 28379 | Coding |
|
2.
| (TGGG)3 | 12 | 34175 | 34186 | Coding |
|
3.
| (ATCG)3 | 12 | 34273 | 34284 | Coding |
|
4.
| (TCGA)3 | 12 | 64147 | 64158 | Coding |
|
5.
| (CAAC)3 | 12 | 68032 | 68043 | Coding |
|
6.
| (AGAT)3 | 12 | 77455 | 77466 | Coding |
|
7.
| (AGA)4 | 12 | 89091 | 89102 | Coding |
|
8.
| (GGT)4 | 12 | 98104 | 98115 | Coding |
|
9.
| (GATC)3 | 12 | 102244 | 102255 | Non coding |
|
10.
| (CGC)4 | 12 | 103210 | 103221 | Coding |
|
11.
| (CAA)4 | 12 | 113757 | 113768 | Coding |
|
12.
| (TGGA)3 | 12 | 128528 | 128539 | Non coding |
|
13.
| (ATCG)3 | 12 | 128857 | 128868 | Coding |
|
14.
| (GATC)3 | 12 | 130861 | 130872 | Non coding |
|
15.
| (TCGA)3 | 12 | 139336 | 139347 | Coding |
|
16.
| (CCAG)3 | 12 | 147023 | 147034 | Coding |
|
17.
| (GATC)3 | 12 | 159052 | 159063 | Coding |
|
18.
| (TCGA)4 | 16 | 163460 | 163475 | Coding |
|
19.
| (TCGA)3 | 12 | 164491 | 164502 | Coding |
|
20.
| (GATC)3 | 12 | 202411 | 202422 | Non coding |
|
21.
| (CGAT)3 | 12 | 235397 | 235408 | Coding |
|
22.
| (CAAGCT)3 | 18 | 238467 | 238484 | Coding |
|
23.
| (TCGA)3 | 12 | 260643 | 260654 | Non coding |
|
24.
| (GATC)3 | 12 | 263821 | 263832 | Coding |
|
25.
| (CTCG)3 | 12 | 278297 | 278308 | Non coding |
|
26.
| (GATC)3 | 12 | 284352 | 284363 | Coding |
|
27.
| (TTGTC)5 | 25 | 289463 | 289487 | Non coding |
|
28.
| (CG)6 | 12 | 300909 | 300920 | Coding |
|
29.
| (TTAA)3 | 12 | 304360 | 304371 | Coding-Non coding |
|
30.
| (CTT)4 | 12 | 339993 | 340004 | Non coding |
|
31.
| (CGC)4 | 12 | 356974 | 356985 | Coding |
|
32.
| (CGAT)3 | 12 | 360832 | 360843 | Coding |
|
33.
| (CGAT)3 | 12 | 365691 | 365702 | Coding |
|
34.
| (ATCG)3 | 12 | 376026 | 376037 | Non coding |
|
35.
| (TCGA)3 | 12 | 383598 | 383609 | Non coding |
|
36.
| (GAC)4 | 12 | 386961 | 386972 | Coding |
|
37.
| (ATCG)3 | 12 | 400227 | 400238 | Coding |
|
38.
| (ATCG)3 | 12 | 408557 | 408568 | Coding |
|
39.
| (GTAT)3 | 12 | 412677 | 412688 | Coding-Non coding |
|
40.
| (GAGC)3 | 12 | 414650 | 414661 | Coding |
|
41.
| (TCGA)3 | 12 | 414770 | 414781 | Coding |
|
42.
| (TCGA)3 | 12 | 433146 | 433157 | Non coding |
|
43.
| (GCAA)3 | 12 | 445490 | 445501 | Coding |
|
44.
| (TCGA)3 | 12 | 452964 | 452975 | Coding |
|
45.
| (ATCG)3 | 12 | 469076 | 469087 | Coding |
|
46.
| (TGTCT)3 | 15 | 486275 | 486289 | Non coding |
|
47.
| (TGA)5 | 15 | 496361 | 496375 | Coding |
|
48.
| (TGAA)3 | 12 | 500253 | 500264 | Coding |
|
49.
| (TCGA)3 | 12 | 502879 | 502890 | Coding |
|
50.
| (GATC)3 | 12 | 511411 | 511422 | Non coding |
|
51.
| (TTTA)3 | 12 | 516120 | 516131 | Coding |
|
52.
| (TCGA)3 | 12 | 519238 | 519249 | Coding |
|
53.
| (ATCG)3 | 12 | 520174 | 520185 | Coding |
|
54.
| (TCGA)3 | 12 | 537400 | 537411 | Coding |
|
55.
| (ATCG)3 | 12 | 537550 | 537561 | Coding |
|
56.
| (GTC)4 | 12 | 542350 | 542361 | Coding |
|
57.
| (AGCG)3 | 12 | 542529 | 542540 | Non coding |
|
58.
| (GAT)4 | 12 | 544134 | 544145 | Coding |
|
59.
| (TCGA)3 | 12 | 560180 | 560191 | Non coding |
|
60.
| (TAT)4 | 12 | 570073 | 570084 | Coding |
|
61.
| (TCGA)4 | 16 | 591458 | 591473 | Coding |
|
62.
| (TCGA)3 | 12 | 614518 | 614529 | Coding |
|
63.
| (CATC)3 | 12 | 632232 | 632243 | Non coding |
|
64.
| (GATC)4 | 16 | 635785 | 635800 | Non coding |
|
65.
| (TTAT)3 | 12 | 636286 | 636297 | Coding |
|
66.
| (TCTTC)3 | 15 | 637346 | 637360 | Non coding |
|
67.
| (AATA)3 | 12 | 651401 | 651412 | Non coding |
|
68.
| (TCGA)3 | 12 | 667483 | 667494 | Coding |
|
69.
| (CCA)4 | 12 | 671604 | 671615 | Coding |
|
70.
| (TAG)4 | 12 | 693954 | 693965 | Coding |
|
71.
| (CAG)4 | 12 | 695944 | 695955 | Coding |
|
72.
| (GCG)4 | 12 | 702177 | 702188 | Coding |
|
73.
| (AGACA)3 | 15 | 706516 | 706530 | Non coding |
|
74.
| (CCA)6 | 18 | 715693 | 715710 | Coding |
|
75.
| (GATC)3 | 12 | 744980 | 744991 | Coding |
|
76.
| (AGT)4 | 12 | 758893 | 758904 | Coding |
|
77.
| (TGGA)3 | 12 | 764981 | 764992 | Non coding |
|
78.
| (GGGT)3 | 12 | 785228 | 785239 | Coding |
|
79.
| (TGTCT)4 | 20 | 787751 | 787770 | Non coding |
|
80.
| (TTG)4 | 12 | 794815 | 794826 | Coding |
|
81.
| (ATCG)3 | 12 | 799940 | 799951 | Coding |
|
82.
| (CGA)4 | 12 | 835541 | 835552 | Coding |
|
83.
| (GGTGGC)4 | 24 | 879459 | 879482 | Coding |
|
84.
| (TTCGCG)3 | 18 | 898576 | 898593 | Non coding |
|
85.
| (TCGA)3 | 12 | 930793 | 930804 | Non coding |
|
86.
| (AGACA)4 | 20 | 943032 | 943051 | Non coding |
|
87.
| (GATA)3 | 12 | 951242 | 951253 | Coding-Non coding |
|
88.
| (GATC)3 | 12 | 980743 | 980754 | Coding |
|
89.
| (GGTGGC)3 | 18 | 984611 | 984628 | Coding |
|
90.
| (TTCT)3 | 12 | 1015676 | 1015687 | Coding |
|
91.
| (GATC)3 | 12 | 1029451 | 1029462 | Coding |
|
92.
| (ATCG)3 | 12 | 1040123 | 1040134 | Coding |
|
93.
| (CGG)4 | 12 | 1047327 | 1047338 | Coding |
|
94.
| (ATCG)3 | 12 | 1053677 | 1053688 | Coding |
|
95.
| (GATC)3 | 12 | 1071450 | 1071461 | Coding |
|
96.
| (TCGA)3 | 12 | 1076623 | 1076634 | Coding |
|
97.
| (TAAA)3 | 12 | 1077759 | 1077770 | Non coding |
|
98.
| (TCGA)3 | 12 | 1078126 | 1078137 | Non coding |
|
99.
| (TCGA)3 | 12 | 1078213 | 1078224 | Non coding |
|
100.
| (TAAA)3 | 12 | 1078345 | 1078356 | Non coding |
|
101.
| (AGCA)3 | 12 | 1091595 | 1091606 | Coding |
|
102.
| (CAAGA)3 | 15 | 1103563 | 1103577 | Non coding |
|
103.
| (TGTCT)4 | 20 | 1109847 | 1109866 | Non coding |
|
104.
| (TCGA)3 | 12 | 1110950 | 1110961 | Coding |
|
105.
| (TCGA)3 | 12 | 1112312 | 1112323 | Coding |
|
106.
| (TGTCT)4 | 20 | 1123705 | 1123724 | Non coding |
|
107.
| (GATC)3 | 12 | 1167488 | 1167499 | Coding |
|
108.
| (CGAT)3 | 12 | 1169063 | 1169074 | Coding |
|
109.
| (AGCC)3 | 12 | 1178994 | 1179005 | Coding |
|
110.
| (CTTT)3 | 12 | 1200192 | 1200203 | Coding |
|
111.
| (TTAT)3 | 12 | 1204370 | 1204381 | Non coding |
|
112.
| (GATC)3 | 12 | 1238181 | 1238192 | Non coding |
|
113.
| (ATTT)3 | 12 | 1258030 | 1258041 | Coding-Non coding |
|
114.
| (CCA)4 | 12 | 1260931 | 1260942 | Coding |
|
115.
| (GATC)3 | 12 | 1263744 | 1263755 | Non coding |
|
116.
| (GGC)5 | 15 | 1264803 | 1264817 | Coding |
|
117.
| (ATCG)3 | 12 | 1292410 | 1292421 | Coding |
|
118.
| (GAGC)3 | 12 | 1303584 | 1303595 | Coding |
|
119.
| (TTAT)3 | 12 | 1327378 | 1327389 | Non coding |
|
120.
| (AATA)3 | 12 | 1339183 | 1339194 | Non coding |
|
121.
| (TCGA)3 | 12 | 1356667 | 1356678 | Coding |
|
122.
| (TGAC)3 | 12 | 1385173 | 1385184 | Non coding |
|
123.
| (TCGA)3 | 12 | 1389144 | 1389155 | Non coding |
|
124.
| (GATC)3 | 12 | 1390902 | 1390913 | Coding |
|
125.
| (TCGA)3 | 12 | 1395959 | 1395970 | Coding |
|
126.
| (TCGA)3 | 12 | 1399081 | 1399092 | Coding |
|
127.
| (CCAG)3 | 12 | 1414193 | 1414204 | Coding |
|
128.
| (AGCC)3 | 12 | 1453698 | 1453709 | Coding |
|
129.
| (GATC)3 | 12 | 1463932 | 1463943 | Coding |
|
130.
| (CTC)4 | 12 | 1475527 | 1475538 | Coding |
|
131.
| (AATA)3 | 12 | 1492122 | 1492133 | Non coding |
|
132.
| (GGCT)3 | 12 | 1498898 | 1498909 | Coding |
|
133.
| (TCGA)3 | 12 | 1515222 | 1515233 | Non coding |
|
134.
| (TCGA)3 | 12 | 1516054 | 1516065 | Non coding |
|
135.
| (GATC)3 | 12 | 1525222 | 1525233 | Coding |
|
136.
| (ATCG)3 | 12 | 1572859 | 1572870 | Non coding |
|
137.
| (ACC)4 | 12 | 1573871 | 1573882 | Coding |
|
138.
| (CAA)4 | 12 | 1577801 | 1577812 | Coding |
|
139.
| (GCTGT)3 | 15 | 1598634 | 1598648 | Non coding |
|
140.
| (TGA)4 | 12 | 1634302 | 1634313 | Coding |
|
141.
| (TTG)4 | 12 | 1652477 | 1652488 | Coding |
|
142.
| (GTT)4 | 12 | 1656722 | 1656733 | Non coding |
|
143.
| (TCGA)3 | 12 | 1659808 | 1659819 | Coding |
|
144.
| (ACC)4 | 12 | 1734921 | 1734932 | Coding |
|
145.
| (AAGG)3 | 12 | 1739673 | 1739684 | Coding |
|
146.
| (ACGACC)3 | 18 | 1747036 | 1747053 | Coding |
|
147.
| (TTCG)3 | 12 | 1755716 | 1755727 | Coding |
|
148.
| (TTGT)3 | 12 | 1806217 | 1806228 | Coding |
|
149.
| (TTG)4 | 12 | 1809914 | 1809925 | Coding |
|
150.
| (GTT)4 | 12 | 1814159 | 1814170 | Non coding |
|
151.
| (CCCG)3 | 12 | 1819885 | 1819896 | Coding |
|
152.
| (TACC)3 | 12 | 1827463 | 1827474 | Coding |
|
153.
| (TCGA)3 | 12 | 1834025 | 1834036 | Coding |
|
154.
| (ACA)4 | 12 | 1885311 | 1885322 | Non coding |
|
155.
| (GATC)3 | 12 | 1902065 | 1902076 | Coding |
|
156.
| (ACT)4 | 12 | 1923404 | 1923415 | Coding |
|
157.
| (TTG)4 | 12 | 1929915 | 1929926 | Coding |
|
158.
| (GAT)4 | 12 | 1933709 | 1933720 | Coding |
|
159.
| (CGAT)3 | 12 | 1943586 | 1943597 | Non coding |
|
160.
| (TCGA)3 | 12 | 1957630 | 1957641 | Coding |
|
161.
| (AATA)3 | 12 | 1977769 | 1977780 | Non coding |
|
162.
| (ATG)4 | 12 | 1988850 | 1988861 | Coding |
|
163.
| (GCTG)3 | 12 | 2063447 | 2063458 | Coding |
|
164.
| (ATCG)3 | 12 | 2063814 | 2063825 | Coding |
|
165.
| (CAA)4 | 12 | 2064176 | 2064187 | Coding-Non coding |
|
166.
| (CTTT)3 | 12 | 2073244 | 2073255 | Non coding |
|
167.
| (ATCA)3 | 12 | 2077228 | 2077239 | Coding |
|
168.
| (CGAT)3 | 12 | 2078638 | 2078649 | Coding |
|
169.
| (GATC)3 | 12 | 2098622 | 2098633 | Non coding |
|
170.
| (ATCG)3 | 12 | 2101955 | 2101966 | Coding |
|
171.
| (AAT)4 | 12 | 2104324 | 2104335 | Non coding |
|
172.
| (TTGT)3 | 12 | 2154020 | 2154031 | Coding |
|
173.
| (TTG)4 | 12 | 2157717 | 2157728 | Coding |
|
174.
| (CAT)5 | 15 | 2165993 | 2166007 | Coding |
|
175.
| (AGACA)11 | 55 | 2169437 | 2169491 | Non coding |
|
176.
| (CTCG)3 | 12 | 2181351 | 2181362 | Coding |
|
177.
| (AAATC)3 | 15 | 2184385 | 2184399 | Coding |
|
178.
| (GATC)3 | 12 | 2248387 | 2248398 | Coding |
|
179.
| (CAACAT)3 | 18 | 2257832 | 2257849 | Coding |
|
180.
| (CGAT)3 | 12 | 2261168 | 2261179 | Non coding |
|
181.
| (CGA)4 | 12 | 2269440 | 2269451 | Coding |
|
182.
| (CAG)4 | 12 | 2287867 | 2287878 | Coding |
|
183.
| (CGAT)3 | 12 | 2292940 | 2292951 | Coding |
|
184.
| (AAAG)3 | 12 | 2307881 | 2307892 | Coding |
|
185.
| (CAC)4 | 12 | 2326634 | 2326645 | Coding |
|
186.
| (ATCG)3 | 12 | 2332661 | 2332672 | Coding |
|
187.
| (GATC)3 | 12 | 2339068 | 2339079 | Coding |
|
188.
| (GATC)3 | 12 | 2400339 | 2400350 | Coding |
|
189.
| (CGAT)3 | 12 | 2402116 | 2402127 | Coding |
|
190.
| (CTTT)3 | 12 | 2416196 | 2416207 | Non coding |
|
191.
| (AGACA)3 | 15 | 2426722 | 2426736 | Non coding |
|
192.
| (TCGA)3 | 12 | 2450198 | 2450209 | Coding |
|
193.
| (ATCG)3 | 12 | 2465826 | 2465837 | Coding |
|
194.
| (CGG)4 | 12 | 2475670 | 2475681 | Coding |
|
195.
| (ATCG)3 | 12 | 2477604 | 2477615 | Non coding |
|
196.
| (ATCG)3 | 12 | 2482536 | 2482547 | Non coding |
|
197.
| (GCA)4 | 12 | 2508571 | 2508582 | Coding |
|
198.
| (AGACCA)3 | 18 | 2520361 | 2520378 | Coding |
|
199.
| (ATCG)3 | 12 | 2543366 | 2543377 | Coding |
|
200.
| (TCGA)3 | 12 | 2546357 | 2546368 | Coding |
|
201.
| (CTTT)3 | 12 | 2553786 | 2553797 | Coding |
|
202.
| (TCGA)3 | 12 | 2556959 | 2556970 | Coding |
|
203.
| (CCG)5 | 15 | 2592703 | 2592717 | Coding |
|
204.
| (ATCG)3 | 12 | 2601537 | 2601548 | Coding |
|
205.
| (GAA)4 | 12 | 2603021 | 2603032 | Coding |
|
206.
| (TCGA)3 | 12 | 2639727 | 2639738 | Non coding |
|
207.
| (AGA)4 | 12 | 2664047 | 2664058 | Coding |
|
208.
| (AGAT)3 | 12 | 2683528 | 2683539 | Coding |
|
209.
| (CGAT)3 | 12 | 2686353 | 2686364 | Non coding |
|
210.
| (TCGA)3 | 12 | 2691434 | 2691445 | Coding |
|
211.
| (CTGG)3 | 12 | 2703030 | 2703041 | Coding |
|
212.
| (TCGA)3 | 12 | 2706990 | 2707001 | Coding |
|
213.
| (TCGA)3 | 12 | 2709955 | 2709966 | Coding |
|
214.
| (TCGA)3 | 12 | 2736087 | 2736098 | Non coding |
|
215.
| (ATC)4 | 12 | 2743885 | 2743896 | Coding |
|
216.
| (GATC)3 | 12 | 2757550 | 2757561 | Coding |
|
217.
| (TCGA)3 | 12 | 2767813 | 2767824 | Coding |
|
218.
| (AAAG)3 | 12 | 2769091 | 2769102 | Coding |
|
219.
| (ATCG)3 | 12 | 2778903 | 2778914 | Coding |
|
220.
| (TCT)4 | 12 | 2791853 | 2791864 | Coding |
|
221.
| (TGGA)7 | 28 | 2792986 | 2793013 | Non coding |
|
222.
| (TTTA)3 | 12 | 2806888 | 2806899 | Non coding |
|
223.
| (CGAT)3 | 12 | 2808884 | 2808895 | Non coding |
|
224.
| (TGG)4 | 12 | 2813811 | 2813822 | Coding |
|
225.
| (GGT)4 | 12 | 2813845 | 2813856 | Coding |
|
226.
| (TGG)4 | 12 | 2814156 | 2814167 | Coding |
|
227.
| (AGACA)3 | 15 | 2835626 | 2835640 | Non coding |
|
228.
| (CTTGT)3 | 15 | 2850540 | 2850554 | Coding |
|
229.
| (AATA)3 | 12 | 2864195 | 2864206 | Coding |
|
230.
| (GAT)4 | 12 | 2866306 | 2866317 | Coding |
|
231.
| (GAT)4 | 12 | 2866909 | 2866920 | Coding |
|
232.
| (TCGA)3 | 12 | 2872281 | 2872292 | Coding |
|
233.
| (ATA)4 | 12 | 2877332 | 2877343 | Coding |
|
234.
| (TAAA)3 | 12 | 2887265 | 2887276 | Coding |
|
235.
| (ATTT)3 | 12 | 2913134 | 2913145 | Coding |
|
236.
| (AGCC)3 | 12 | 2918032 | 2918043 | Coding |
|
237.
| (TAAT)3 | 12 | 2928089 | 2928100 | Coding-Non coding |
|
238.
| (AATGGC)3 | 18 | 2953710 | 2953727 | Coding |
|
239.
| (CGAT)3 | 12 | 2954759 | 2954770 | Coding |
|
240.
| (CGAT)4 | 16 | 2972704 | 2972719 | Coding |
|
241.
| (TCGA)3 | 12 | 2978829 | 2978840 | Non coding |
|
242.
| (ATCG)3 | 12 | 2979559 | 2979570 | Non coding |
|
243.
| (TAAT)3 | 12 | 2983773 | 2983784 | Non coding |
|
244.
| (TCTG)3 | 12 | 2993846 | 2993857 | Coding |
|
245.
| (CTG)4 | 12 | 3002560 | 3002571 | Coding |
|
246.
| (TTTG)3 | 12 | 3004269 | 3004280 | Coding |
|
247.
| (TCGA)3 | 12 | 3010168 | 3010179 | Coding |
|
248.
| (TCA)4 | 12 | 3029595 | 3029606 | Coding |
|
249.
| (ATCG)3 | 12 | 3037860 | 3037871 | Coding |
|
250.
| (TTAT)3 | 12 | 3045232 | 3045243 | Coding |
|
251.
| (TAA)4 | 12 | 3051099 | 3051110 | Coding |
|
252.
| (GATC)3 | 12 | 3057231 | 3057242 | Coding |
|
253.
| (ATCG)3 | 12 | 3069633 | 3069644 | Coding |
|
254.
| (CGAT)3 | 12 | 3092553 | 3092564 | Coding |
|
255.
| (GCC)4 | 12 | 3105036 | 3105047 | Coding |
|
256.
| (TGTCT)4 | 20 | 3109601 | 3109620 | Non coding |
|
257.
| (CGAT)3 | 12 | 3120697 | 3120708 | Coding |
|
258.
| (CCAC)4 | 16 | 3121724 | 3121739 | Non coding |
|
259.
| (ATC)4 | 12 | 3129918 | 3129929 | Coding |
|
260.
| (GATC)3 | 12 | 3154156 | 3154167 | Coding |
|
261.
| (GATC)3 | 12 | 3164453 | 3164464 | Coding |
|
262.
| (AATA)3 | 12 | 3196830 | 3196841 | Non coding |
|
263.
| (TTAT)3 | 12 | 3201707 | 3201718 | Non coding |
|
264.
| (GCGATG)3 | 18 | 3203539 | 3203556 | Coding |
|
265.
| (CAGC)4 | 16 | 3219676 | 3219691 | Coding |
|
266.
| (GCTG)3 | 12 | 3222569 | 3222580 | Coding |
|
267.
| (TTTG)3 | 12 | 3224900 | 3224911 | Coding |
|
268.
| (GATC)3 | 12 | 3237167 | 3237178 | Coding |
|
269.
| (TGTCT)3 | 15 | 3245702 | 3245716 | Non coding |
|
270.
| (TGC)4 | 12 | 3273812 | 3273823 | Coding |
|
271.
| (CGAT)3 | 12 | 3278542 | 3278553 | Coding |
|
272.
| (ATG)4 | 12 | 3289123 | 3289134 | Coding |
|
273.
| (ATCG)3 | 12 | 3290140 | 3290151 | Coding |
|
274.
| (TCGA)3 | 12 | 3331493 | 3331504 | Coding |
|
275.
| (AATA)3 | 12 | 3334658 | 3334669 | Non coding |
|
276.
| (ATCG)3 | 12 | 3338677 | 3338688 | Coding |
|
277.
| (TCGA)3 | 12 | 3372136 | 3372147 | Non coding |
|
278.
| (TTTA)3 | 12 | 3402839 | 3402850 | Non coding |
|
279.
| (AATT)3 | 12 | 3416696 | 3416707 | Coding-Non coding |
|
280.
| (CGAT)3 | 12 | 3420033 | 3420044 | Coding |
|
281.
| (CGC)4 | 12 | 3420989 | 3421000 | Coding |
|
282.
| (CAAGA)3 | 15 | 3435056 | 3435070 | Coding |
|
283.
| (CGCT)3 | 12 | 3443006 | 3443017 | Non coding |
|
284.
| (ATCG)3 | 12 | 3447656 | 3447667 | Coding |
|
285.
| (AAAG)3 | 12 | 3448225 | 3448236 | Non coding |
|
286.
| (TCGA)3 | 12 | 3454360 | 3454371 | Coding |
|
287.
| (TCGA)3 | 12 | 3467175 | 3467186 | Non coding |
|
288.
| (CGAT)3 | 12 | 3484178 | 3484189 | Coding |
|
289.
| (ATCG)3 | 12 | 3485584 | 3485595 | Non coding |
|
290.
| (TCGA)3 | 12 | 3487616 | 3487627 | Coding |
|
291.
| (TCGA)3 | 12 | 3487683 | 3487694 | Coding |
|
292.
| (TCGA)3 | 12 | 3490487 | 3490498 | Coding |
|
293.
| (ACC)4 | 12 | 3500887 | 3500898 | Coding |
|
294.
| (TGG)4 | 12 | 3504260 | 3504271 | Coding |
|
295.
| (AACAT)3 | 15 | 3523357 | 3523371 | Non coding |
|
296.
| (TCGA)4 | 16 | 3528570 | 3528585 | Coding |
|
297.
| (GCC)5 | 15 | 3529034 | 3529048 | Coding |
|
298.
| (GACT)3 | 12 | 3534425 | 3534436 | Coding |
|
299.
| (CGAT)3 | 12 | 3547828 | 3547839 | Coding |
|
300.
| (GGC)4 | 12 | 3567774 | 3567785 | Coding |
|
301.
| (ATCG)3 | 12 | 3571779 | 3571790 | Coding |
|
302.
| (GAT)4 | 12 | 3585534 | 3585545 | Coding |
|
303.
| (TTAT)3 | 12 | 3593446 | 3593457 | Non coding |
|
304.
| (GATC)3 | 12 | 3594091 | 3594102 | Coding |
|
305.
| (ATCG)3 | 12 | 3618565 | 3618576 | Coding |
|
306.
| (TCGA)3 | 12 | 3627385 | 3627396 | Coding |
|
307.
| (GCG)4 | 12 | 3647265 | 3647276 | Coding |
|
308.
| (GCC)4 | 12 | 3648956 | 3648967 | Coding |
|
309.
| (GATC)3 | 12 | 3649861 | 3649872 | Coding |
|
310.
| (TCGA)3 | 12 | 3666535 | 3666546 | Coding |
|
311.
| (CTACAC)3 | 18 | 3675649 | 3675666 | Coding |
|
312.
| (CGAT)3 | 12 | 3706270 | 3706281 | Non coding |
|
313.
| (TGTCT)3 | 15 | 3708738 | 3708752 | Non coding |
|
314.
| (AGACA)3 | 15 | 3744690 | 3744704 | Non coding |
|
315.
| (ATCG)3 | 12 | 3747212 | 3747223 | Coding |
|
316.
| (ATCG)3 | 12 | 3750682 | 3750693 | Coding |
|
317.
| (GGAC)3 | 12 | 3758520 | 3758531 | Coding |
|
318.
| (AAG)5 | 15 | 3811558 | 3811572 | Coding |
|
319.
| (GAT)6 | 18 | 3811632 | 3811649 | Coding |
|
320.
| (TCGA)3 | 12 | 3832001 | 3832012 | Non coding |
|
321.
| (GCT)4 | 12 | 3835173 | 3835184 | Coding |
|
322.
| (TTAG)3 | 12 | 3835277 | 3835288 | Non coding |
|
323.
| (CGAT)3 | 12 | 3841608 | 3841619 | Coding |
|
324.
| (GCTC)3 | 12 | 3862272 | 3862283 | Non coding |
|
325.
| (AGA)4 | 12 | 3878758 | 3878769 | Coding |
|
326.
| (AATA)3 | 12 | 3899185 | 3899196 | Non coding |
|
327.
| (GATC)3 | 12 | 3900821 | 3900832 | Coding |
|
328.
| (GCC)5 | 15 | 3919167 | 3919181 | Coding |
|
329.
| (TCGC)3 | 12 | 3928005 | 3928016 | Non coding |
|
330.
| (TGTCT)3 | 15 | 3956335 | 3956349 | Coding |
|
331.
| (TATTT)3 | 15 | 3962730 | 3962744 | Coding |
|
332.
| (TCGA)3 | 12 | 3965305 | 3965316 | Coding |
|
333.
| (CGAG)3 | 12 | 3970452 | 3970463 | Non coding |
|
334.
| (GGGT)3 | 12 | 3982560 | 3982571 | Non coding |
|
335.
| (ATCG)3 | 12 | 3993622 | 3993633 | Non coding |
|
336.
| (CTGA)3 | 12 | 3999602 | 3999613 | Non coding |
|
337.
| (TGTCT)3 | 15 | 3999806 | 3999820 | Non coding |
|
338.
| (TGC)4 | 12 | 4016920 | 4016931 | Coding |
|
339.
| (AATA)3 | 12 | 4024189 | 4024200 | Non coding |
|
340.
| (TCTT)3 | 12 | 4030669 | 4030680 | Coding |
|
341.
| (CCAC)3 | 12 | 4035835 | 4035846 | Non coding |
|
342.
| (CAA)4 | 12 | 4037485 | 4037496 | Coding |
|
343.
| (CCG)4 | 12 | 4038163 | 4038174 | Coding |
|
344.
| (TGG)4 | 12 | 4048047 | 4048058 | Coding |
|
345.
| (CTTT)3 | 12 | 4055018 | 4055029 | Coding |
|
346.
| (ATGT)3 | 12 | 4066660 | 4066671 | Coding |
|
347.
| (TGTCT)3 | 15 | 4089982 | 4089996 | Coding |
|
348.
| (GGC)4 | 12 | 4090125 | 4090136 | Coding |
|
349.
| (ATCG)3 | 12 | 4108975 | 4108986 | Coding |
|
350.
| (AAAT)3 | 12 | 4114382 | 4114393 | Coding |
|
351.
| (GATC)3 | 12 | 4162792 | 4162803 | Non coding |
|
352.
| (CGCGAA)3 | 18 | 4173114 | 4173131 | Coding |
|
353.
| (TAA)4 | 12 | 4183725 | 4183736 | Coding |
|
354.
| (CTCG)3 | 12 | 4192900 | 4192911 | Non coding |
|
355.
| (AGCA)3 | 12 | 4194426 | 4194437 | Coding |
|
356.
| (GTG)4 | 12 | 4199297 | 4199308 | Coding |
|
357.
| (AGACA)3 | 15 | 4209337 | 4209351 | Non coding |
|
358.
| (ACCC)3 | 12 | 4227328 | 4227339 | Non coding |
|
359.
| (AATA)3 | 12 | 4235806 | 4235817 | Non coding |
|
360.
| (TCGA)3 | 12 | 4251304 | 4251315 | Coding |
|
361.
| (GATA)3 | 12 | 4258605 | 4258616 | Non coding |
|
362.
| (GCG)4 | 12 | 4269179 | 4269190 | Coding |
|
363.
| (CGAT)3 | 12 | 4270110 | 4270121 | Coding |
|
364.
| (CTGG)3 | 12 | 4273518 | 4273529 | Coding |
|
365.
| (GTCTT)3 | 15 | 4297556 | 4297570 | Non coding |
|
366.
| (ATCG)3 | 12 | 4299822 | 4299833 | Coding |
|
367.
| (TCGA)3 | 12 | 4317211 | 4317222 | Non coding |
|
368.
| (ATCG)3 | 12 | 4321763 | 4321774 | Coding |
|
369.
| (ATCG)3 | 12 | 4323708 | 4323719 | Coding |
|
370.
| (CAA)4 | 12 | 4325942 | 4325953 | Coding |
|
371.
| (GCG)4 | 12 | 4342612 | 4342623 | Coding |
|
372.
| (ATCG)4 | 16 | 4346062 | 4346077 | Coding |
|
373.
| (TCGA)3 | 12 | 4357069 | 4357080 | Coding |
|
374.
| (TCGA)4 | 16 | 4376235 | 4376250 | Coding |
|
375.
| (GTTT)3 | 12 | 4389517 | 4389528 | Coding |
|
376.
| (CGAT)3 | 12 | 4389886 | 4389897 | Non coding |
|
377.
| (CGAT)3 | 12 | 4395825 | 4395836 | Coding |
|
378.
| (CTGG)3 | 12 | 4397049 | 4397060 | Coding |
|
379.
| (GATC)3 | 12 | 4410106 | 4410117 | Coding |
|
380.
| (GATC)3 | 12 | 4429867 | 4429878 | Coding |
|
381.
| (TTAT)3 | 12 | 4470203 | 4470214 | Coding |
|
382.
| (GACG)3 | 12 | 4473141 | 4473152 | Coding |
|
383.
| (GATGCC)3 | 18 | 4483975 | 4483992 | Coding |
|
384.
| (GTCTT)3 | 15 | 4500457 | 4500471 | Coding |
|
385.
| (ACTT)3 | 12 | 4514262 | 4514273 | Non coding |
|
386.
| (AATT)3 | 12 | 4526206 | 4526217 | Non coding |
|
387.
| (ATAC)3 | 12 | 4526406 | 4526417 | Non coding |
|
388.
| (CGC)4 | 12 | 4546696 | 4546707 | Coding |
|
389.
| (TCGA)3 | 12 | 4565470 | 4565481 | Coding |
|
390.
| (CGAT)3 | 12 | 4614022 | 4614033 | Coding |
|
391.
| (GATC)3 | 12 | 4621689 | 4621700 | Coding |
|
392.
| (TGTCT)4 | 20 | 4641444 | 4641463 | Non coding |
|
393.
| (CGCT)3 | 12 | 4656573 | 4656584 | Coding |
|
394.
| (AT)12 | 24 | 4669864 | 4669887 | Non coding |
|
395.
| (CGAT)3 | 12 | 4672711 | 4672722 | Coding |
|
396.
| (TCTA)3 | 12 | 4674843 | 4674854 | Non coding |
|
397.
| (TCGA)3 | 12 | 4682622 | 4682633 | Coding |
|
398.
| (TGGC)4 | 16 | 4696919 | 4696934 | Coding |
|
399.
| (TTGG)3 | 12 | 4701236 | 4701247 | Coding |
|
400.
| (GATC)3 | 12 | 4702180 | 4702191 | Coding |
|
401.
| (CGC)4 | 12 | 4707029 | 4707040 | Coding |
|
402.
| (TCGA)4 | 16 | 4709605 | 4709620 | Coding |
|
403.
| (TCGA)3 | 12 | 4721575 | 4721586 | Coding |
|
404.
| (GATG)3 | 12 | 4738752 | 4738763 | Non coding |
|
405.
| (GGCT)3 | 12 | 4767949 | 4767960 | Coding |
|
406.
| (ATCG)3 | 12 | 4776636 | 4776647 | Coding |
|
407.
| (CGAT)3 | 12 | 4776687 | 4776698 | Coding |
|
408.
| (CGAC)3 | 12 | 4793978 | 4793989 | Coding |
|
409.
| (GCCA)3 | 12 | 4800496 | 4800507 | Coding |
|
410.
| (AATC)3 | 12 | 4819253 | 4819264 | Coding |
|
411.
| (GATC)3 | 12 | 4829400 | 4829411 | Coding |
|
412.
| (TTC)4 | 12 | 4875547 | 4875558 | Coding |
|
413.
| (CCAT)3 | 12 | 4897362 | 4897373 | Non coding |
|
414.
| (CGAT)3 | 12 | 4902451 | 4902462 | Coding |
|
415.
| (GAT)5 | 15 | 4905059 | 4905073 | Coding |
|
416.
| (TCGA)3 | 12 | 4908450 | 4908461 | Non coding |
|
417.
| (AATA)3 | 12 | 4916526 | 4916537 | Coding |
|
418.
| (CCG)5 | 15 | 4921279 | 4921293 | Coding |
|
419.
| (CCAT)3 | 12 | 4938425 | 4938436 | Non coding |
|
420.
| (CAT)4 | 12 | 4950229 | 4950240 | Coding |
|
421.
| (GCG)4 | 12 | 4975723 | 4975734 | Coding |
|
422.
| (AAG)4 | 12 | 4985194 | 4985205 | Coding |
|
423.
| (AAAT)3 | 12 | 5010403 | 5010414 | Coding |
|
424.
| (ATCG)3 | 12 | 5018105 | 5018116 | Coding |
|
425.
| (CAT)4 | 12 | 5019589 | 5019600 | Coding |
|
426.
| (AATA)3 | 12 | 5035565 | 5035576 | Non coding |
|
427.
| (CGC)5 | 15 | 5039327 | 5039341 | Coding |
|
428.
| (TTAA)3 | 12 | 5052066 | 5052077 | Non coding |
|
429.
| (TTAA)3 | 12 | 5065825 | 5065836 | Non coding |
|
430.
| (TTAA)3 | 12 | 5076002 | 5076013 | Non coding |
|
431.
| (GTC)4 | 12 | 5088623 | 5088634 | Coding |
|
432.
| (GGAGTC)3 | 18 | 5095058 | 5095075 | Coding |
|
433.
| (CAG)4 | 12 | 5104912 | 5104923 | Coding |
|
434.
| (CGAT)3 | 12 | 5112424 | 5112435 | Non coding |
|
435.
| (TTGC)3 | 12 | 5125044 | 5125055 | Coding |
|
436.
| (CCAA)3 | 12 | 5132060 | 5132071 | Coding |
|
437.
| (TTGG)3 | 12 | 5136404 | 5136415 | Coding |
|
438.
| (TCGA)4 | 16 | 5142105 | 5142120 | Coding |
|
439.
| (CTCG)3 | 12 | 5152050 | 5152061 | Non coding |
|
440.
| (CCA)4 | 12 | 5157027 | 5157038 | Coding |
|
441.
| (GCCGCA)3 | 18 | 5157288 | 5157305 | Coding |
|
442.
| (TCGA)3 | 12 | 5167841 | 5167852 | Coding |
|
443.
| (ATCG)3 | 12 | 5188523 | 5188534 | Coding |
|
444.
| (CCAC)3 | 12 | 5194159 | 5194170 | Non coding |
|
445.
| (TGTCT)4 | 20 | 5202485 | 5202504 | Non coding |
|
446.
| (CGAT)3 | 12 | 5216115 | 5216126 | Coding |
|
447.
| (GATC)3 | 12 | 5219728 | 5219739 | Coding |
|
448.
| (CAAGA)3 | 15 | 5237775 | 5237789 | Non coding |
|
449.
| (CAGC)3 | 12 | 5276148 | 5276159 | Coding |
|
450.
| (AAGC)3 | 12 | 5281607 | 5281618 | Coding |
|
451.
| (TGTCT)3 | 15 | 5295901 | 5295915 | Non coding |
|
452.
| (TAA)4 | 12 | 5308007 | 5308018 | Coding |
|
453.
| (ATTT)3 | 12 | 5313602 | 5313613 | Coding |
|
454.
| (GTAA)3 | 12 | 5316370 | 5316381 | Coding |
|
455.
| (TCA)5 | 15 | 5344965 | 5344979 | Coding |
|
456.
| (TCGA)3 | 12 | 5352639 | 5352650 | Coding |
|
457.
| (CCAT)3 | 12 | 5356423 | 5356434 | Non coding |
|
458.
| (TTTA)3 | 12 | 5364126 | 5364137 | Coding |
|
459.
| (CGAT)3 | 12 | 5379815 | 5379826 | Coding |
|
460.
| (ATCG)3 | 12 | 5410387 | 5410398 | Non coding |
|
461.
| (TGC)4 | 12 | 5410839 | 5410850 | Coding |
|
462.
| (TCGA)3 | 12 | 5412725 | 5412736 | Non coding |
|
463.
| (CAG)4 | 12 | 5413445 | 5413456 | Coding |
|
464.
| (AGC)5 | 15 | 5413461 | 5413475 | Coding |
|
465.
| (GCTCG)4 | 20 | 5419612 | 5419631 | Non coding |
|
466.
| (GCT)4 | 12 | 5428196 | 5428207 | Coding |
|
467.
| (GATC)3 | 12 | 5440097 | 5440108 | Non coding |
|
468.
| (GCTGAA)3 | 18 | 5445451 | 5445468 | Coding |
|
469.
| (TGGA)4 | 16 | 5460987 | 5461002 | Non coding |
|
470.
| (GCTG)3 | 12 | 5462271 | 5462282 | Coding |
|
471.
| (GTTGG)3 | 15 | 5488791 | 5488805 | Coding |
|
472.
| (CGAT)3 | 12 | 5496191 | 5496202 | Non coding |
|
473.
| (CGAT)3 | 12 | 5502603 | 5502614 | Coding |
|
474.
| (ATCG)3 | 12 | 5507124 | 5507135 | Non coding |
|
475.
| (ATCG)3 | 12 | 5508601 | 5508612 | Coding |
|
476.
| (ATCG)3 | 12 | 5516087 | 5516098 | Coding |
|
477.
| (CGG)4 | 12 | 5522905 | 5522916 | Coding |
|
478.
| (TGTCT)3 | 15 | 5549482 | 5549496 | Non coding |
|
479.
| (TCGA)3 | 12 | 5557952 | 5557963 | Coding |
|
480.
| (ATCG)3 | 12 | 5565230 | 5565241 | Non coding |
|
481.
| (AGACA)3 | 15 | 5568877 | 5568891 | Non coding |
|
482.
| (CCAC)3 | 12 | 5572257 | 5572268 | Coding |
|
483.
| (CGAT)3 | 12 | 5575269 | 5575280 | Coding |
|
484.
| (GCTG)3 | 12 | 5583447 | 5583458 | Non coding |
|
485.
| (GATC)3 | 12 | 5589616 | 5589627 | Coding |
|
486.
| (GATC)3 | 12 | 5612880 | 5612891 | Coding |
|
487.
| (GGCGAT)3 | 18 | 5621073 | 5621090 | Coding |
|
488.
| (CAAC)3 | 12 | 5628431 | 5628442 | Coding |
|
489.
| (TCGA)3 | 12 | 5637702 | 5637713 | Coding |
|
490.
| (CGAT)3 | 12 | 5644636 | 5644647 | Coding |
|
491.
| (GATC)3 | 12 | 5668854 | 5668865 | Coding |
|
492.
| (CCAC)3 | 12 | 5673992 | 5674003 | Non coding |
|
493.
| (ATCG)3 | 12 | 5683000 | 5683011 | Coding |
|
494.
| (GGTGGC)3 | 18 | 5710714 | 5710731 | Coding |
|
495.
| (ATCG)3 | 12 | 5729956 | 5729967 | Coding |
|
496.
| (GAGC)3 | 12 | 5743091 | 5743102 | Coding |
|
497.
| (CGAT)3 | 12 | 5750680 | 5750691 | Coding |
|
498.
| (TGTCT)3 | 15 | 5753079 | 5753093 | Non coding |
|
499.
| (ATTT)3 | 12 | 5786523 | 5786534 | Coding |
|
500.
| (ATCG)3 | 12 | 5797035 | 5797046 | Coding |
|
501.
| (TCGA)3 | 12 | 5805691 | 5805702 | Coding |
|
502.
| (AAG)4 | 12 | 5810685 | 5810696 | Coding |
|
503.
| (ATCG)3 | 12 | 5835405 | 5835416 | Coding |
|
504.
| (TAGGCT)3 | 18 | 5838648 | 5838665 | Non coding |
|
505.
| (TCGA)3 | 12 | 5875740 | 5875751 | Coding |
|
506.
| (TGTCT)4 | 20 | 5878277 | 5878296 | Non coding |
|
507.
| (TTG)4 | 12 | 5880507 | 5880518 | Coding |
|
508.
| (TCGA)3 | 12 | 5923191 | 5923202 | Non coding |
|
509.
| (TCGA)3 | 12 | 5924258 | 5924269 | Coding |
|
510.
| (TCGA)3 | 12 | 5931727 | 5931738 | Coding |
|
511.
| (TCGA)3 | 12 | 5932256 | 5932267 | Non coding |
|
512.
| (TCGA)3 | 12 | 5932853 | 5932864 | Coding |
|
513.
| (AATA)3 | 12 | 5935882 | 5935893 | Non coding |
|
514.
| (AATA)3 | 12 | 5963607 | 5963618 | Non coding |
|
515.
| (AAAG)3 | 12 | 5971943 | 5971954 | Coding |
|
516.
| (CCAT)3 | 12 | 5991202 | 5991213 | Coding |
|
517.
| (TCGA)3 | 12 | 5998252 | 5998263 | Coding |
|
518.
| (CGAT)3 | 12 | 5998334 | 5998345 | Coding |
|
519.
| (CGAG)3 | 12 | 6005912 | 6005923 | Coding |
|
520.
| (TCGA)3 | 12 | 6032517 | 6032528 | Coding |
|
521.
| (CGAG)3 | 12 | 6050496 | 6050507 | Coding |
|
522.
| (TGTCT)3 | 15 | 6056399 | 6056413 | Non coding |
|
523.
| (ATCG)3 | 12 | 6069871 | 6069882 | Coding |
|
524.
| (AGACA)4 | 20 | 6077327 | 6077346 | Non coding |
|
525.
| (ATCG)3 | 12 | 6089486 | 6089497 | Coding |
|
526.
| (ACTA)3 | 12 | 6091472 | 6091483 | Coding-Non coding |
|
527.
| (ATCG)3 | 12 | 6100543 | 6100554 | Coding |
|
528.
| (CAG)4 | 12 | 6103815 | 6103826 | Coding |
|
529.
| (GGT)4 | 12 | 6104324 | 6104335 | Coding |
|
530.
| (CGAT)3 | 12 | 6109264 | 6109275 | Coding |
|
531.
| (AGACA)4 | 20 | 6138273 | 6138292 | Non coding |
|
532.
| (ATCG)3 | 12 | 6148193 | 6148204 | Coding |
|
533.
| (TGG)4 | 12 | 6160523 | 6160534 | Coding |
|
534.
| (ATCG)3 | 12 | 6161629 | 6161640 | Coding |
|
535.
| (TCGA)3 | 12 | 6162606 | 6162617 | Coding |
|
536.
| (CGAT)3 | 12 | 6169599 | 6169610 | Coding |
|
537.
| (CGATG)11 | 55 | 6196933 | 6196987 | Non coding |
|
538.
| (TCGA)3 | 12 | 6204051 | 6204062 | Coding |
|
539.
| (CGAG)3 | 12 | 6215307 | 6215318 | Coding |
|
540.
| (CGAT)3 | 12 | 6230628 | 6230639 | Non coding |
|
541.
| (CGAT)3 | 12 | 6231061 | 6231072 | Coding |
|
542.
| (CGAT)3 | 12 | 6252744 | 6252755 | Coding |
|
543.
| (ATTT)4 | 16 | 6264649 | 6264664 | Non coding |
|
544.
| (GCC)4 | 12 | 6271479 | 6271490 | Coding |
|
545.
| (GATC)3 | 12 | 6274195 | 6274206 | Coding |
|
546.
| (TTGG)3 | 12 | 6279852 | 6279863 | Coding |
|
547.
| (ATCG)3 | 12 | 6281177 | 6281188 | Coding |
|
|
|
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71
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