CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Chamaesiphon minutus PCC 6605 (NC_019697 6284096 bp)                                                               Show Primer       Download
Compound : 1     Perfect Compound : 1   Overlapping Compound : 0
Perfect      : 547     Density of SSR      : 1SSR/ 11.47 kb   Average length of SSR  : 12.99 bp
Coding      : 387     Non-Coding           : 153   Coding and Non-Coding : 8
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 2 112 373 42 18 547
IMPERFECT 0 170 1700 2209 214 183 4476
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (TTGTC)525289463289487Non coding
2. (TGTCT)315486275486289Non coding
3. (TCTTC)315637346637360Non coding
4. (AGACA)315706516706530Non coding
5. (TGTCT)420787751787770Non coding
6. (AGACA)420943032943051Non coding
7. (CAAGA)31511035631103577Non coding
8. (TGTCT)42011098471109866Non coding
9. (TGTCT)42011237051123724Non coding
10. (GCTGT)31515986341598648Non coding
11. (AGACA)115521694372169491Non coding
12. (AAATC)31521843852184399Coding
13. (AGACA)31524267222426736Non coding
14. (AGACA)31528356262835640Non coding
15. (CTTGT)31528505402850554Coding
16. (TGTCT)42031096013109620Non coding
17. (TGTCT)31532457023245716Non coding
18. (CAAGA)31534350563435070Coding
19. (AACAT)31535233573523371Non coding
20. (TGTCT)31537087383708752Non coding
21. (AGACA)31537446903744704Non coding
22. (TGTCT)31539563353956349Coding
23. (TATTT)31539627303962744Coding
24. (TGTCT)31539998063999820Non coding
25. (TGTCT)31540899824089996Coding
26. (AGACA)31542093374209351Non coding
27. (GTCTT)31542975564297570Non coding
28. (GTCTT)31545004574500471Coding
29. (TGTCT)42046414444641463Non coding
30. (TGTCT)42052024855202504Non coding
31. (CAAGA)31552377755237789Non coding
32. (TGTCT)31552959015295915Non coding
33. (GCTCG)42054196125419631Non coding
34. (GTTGG)31554887915488805Coding
35. (TGTCT)31555494825549496Non coding
36. (AGACA)31555688775568891Non coding
37. (TGTCT)31557530795753093Non coding
38. (TGTCT)42058782775878296Non coding
39. (TGTCT)31560563996056413Non coding
40. (AGACA)42060773276077346Non coding
41. (AGACA)42061382736138292Non coding
42. (CGATG)115561969336196987Non coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.