CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Chamaesiphon minutus PCC 6605 (NC_019697 6284096 bp)                                                               Show Primer       Download
Compound : 1     Perfect Compound : 1   Overlapping Compound : 0
Perfect      : 547     Density of SSR      : 1SSR/ 11.47 kb   Average length of SSR  : 12.99 bp
Coding      : 387     Non-Coding           : 153   Coding and Non-Coding : 8
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 2 112 373 42 18 547
IMPERFECT 0 170 1700 2209 214 183 4476
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (AGA)4128909189102Coding
2. (GGT)4129810498115Coding
3. (CGC)412103210103221Coding
4. (CAA)412113757113768Coding
5. (CTT)412339993340004Non coding
6. (CGC)412356974356985Coding
7. (GAC)412386961386972Coding
8. (TGA)515496361496375Coding
9. (GTC)412542350542361Coding
10. (GAT)412544134544145Coding
11. (TAT)412570073570084Coding
12. (CCA)412671604671615Coding
13. (TAG)412693954693965Coding
14. (CAG)412695944695955Coding
15. (GCG)412702177702188Coding
16. (CCA)618715693715710Coding
17. (AGT)412758893758904Coding
18. (TTG)412794815794826Coding
19. (CGA)412835541835552Coding
20. (CGG)41210473271047338Coding
21. (CCA)41212609311260942Coding
22. (GGC)51512648031264817Coding
23. (CTC)41214755271475538Coding
24. (ACC)41215738711573882Coding
25. (CAA)41215778011577812Coding
26. (TGA)41216343021634313Coding
27. (TTG)41216524771652488Coding
28. (GTT)41216567221656733Non coding
29. (ACC)41217349211734932Coding
30. (TTG)41218099141809925Coding
31. (GTT)41218141591814170Non coding
32. (ACA)41218853111885322Non coding
33. (ACT)41219234041923415Coding
34. (TTG)41219299151929926Coding
35. (GAT)41219337091933720Coding
36. (ATG)41219888501988861Coding
37. (CAA)41220641762064187Coding-Non coding
38. (AAT)41221043242104335Non coding
39. (TTG)41221577172157728Coding
40. (CAT)51521659932166007Coding
41. (CGA)41222694402269451Coding
42. (CAG)41222878672287878Coding
43. (CAC)41223266342326645Coding
44. (CGG)41224756702475681Coding
45. (GCA)41225085712508582Coding
46. (CCG)51525927032592717Coding
47. (GAA)41226030212603032Coding
48. (AGA)41226640472664058Coding
49. (ATC)41227438852743896Coding
50. (TCT)41227918532791864Coding
51. (TGG)41228138112813822Coding
52. (GGT)41228138452813856Coding
53. (TGG)41228141562814167Coding
54. (GAT)41228663062866317Coding
55. (GAT)41228669092866920Coding
56. (ATA)41228773322877343Coding
57. (CTG)41230025603002571Coding
58. (TCA)41230295953029606Coding
59. (TAA)41230510993051110Coding
60. (GCC)41231050363105047Coding
61. (ATC)41231299183129929Coding
62. (TGC)41232738123273823Coding
63. (ATG)41232891233289134Coding
64. (CGC)41234209893421000Coding
65. (ACC)41235008873500898Coding
66. (TGG)41235042603504271Coding
67. (GCC)51535290343529048Coding
68. (GGC)41235677743567785Coding
69. (GAT)41235855343585545Coding
70. (GCG)41236472653647276Coding
71. (GCC)41236489563648967Coding
72. (AAG)51538115583811572Coding
73. (GAT)61838116323811649Coding
74. (GCT)41238351733835184Coding
75. (AGA)41238787583878769Coding
76. (GCC)51539191673919181Coding
77. (TGC)41240169204016931Coding
78. (CAA)41240374854037496Coding
79. (CCG)41240381634038174Coding
80. (TGG)41240480474048058Coding
81. (GGC)41240901254090136Coding
82. (TAA)41241837254183736Coding
83. (GTG)41241992974199308Coding
84. (GCG)41242691794269190Coding
85. (CAA)41243259424325953Coding
86. (GCG)41243426124342623Coding
87. (CGC)41245466964546707Coding
88. (CGC)41247070294707040Coding
89. (TTC)41248755474875558Coding
90. (GAT)51549050594905073Coding
91. (CCG)51549212794921293Coding
92. (CAT)41249502294950240Coding
93. (GCG)41249757234975734Coding
94. (AAG)41249851944985205Coding
95. (CAT)41250195895019600Coding
96. (CGC)51550393275039341Coding
97. (GTC)41250886235088634Coding
98. (CAG)41251049125104923Coding
99. (CCA)41251570275157038Coding
100. (TAA)41253080075308018Coding
101. (TCA)51553449655344979Coding
102. (TGC)41254108395410850Coding
103. (CAG)41254134455413456Coding
104. (AGC)51554134615413475Coding
105. (GCT)41254281965428207Coding
106. (CGG)41255229055522916Coding
107. (AAG)41258106855810696Coding
108. (TTG)41258805075880518Coding
109. (CAG)41261038156103826Coding
110. (GGT)41261043246104335Coding
111. (TGG)41261605236160534Coding
112. (GCC)41262714796271490Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.