CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Chamaesiphon minutus PCC 6605 (NC_019697 6284096 bp)                                                               Show Primer       Download
Compound : 1     Perfect Compound : 1   Overlapping Compound : 0
Perfect      : 547     Density of SSR      : 1SSR/ 11.47 kb   Average length of SSR  : 12.99 bp
Coding      : 387     Non-Coding           : 153   Coding and Non-Coding : 8
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 2 112 373 42 18 547
IMPERFECT 0 170 1700 2209 214 183 4476
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (CGAT)3122836828379Coding
2. (TGGG)3123417534186Coding
3. (ATCG)3123427334284Coding
4. (TCGA)3126414764158Coding
5. (CAAC)3126803268043Coding
6. (AGAT)3127745577466Coding
7. (GATC)312102244102255Non coding
8. (TGGA)312128528128539Non coding
9. (ATCG)312128857128868Coding
10. (GATC)312130861130872Non coding
11. (TCGA)312139336139347Coding
12. (CCAG)312147023147034Coding
13. (GATC)312159052159063Coding
14. (TCGA)416163460163475Coding
15. (TCGA)312164491164502Coding
16. (GATC)312202411202422Non coding
17. (CGAT)312235397235408Coding
18. (TCGA)312260643260654Non coding
19. (GATC)312263821263832Coding
20. (CTCG)312278297278308Non coding
21. (GATC)312284352284363Coding
22. (TTAA)312304360304371Coding-Non coding
23. (CGAT)312360832360843Coding
24. (CGAT)312365691365702Coding
25. (ATCG)312376026376037Non coding
26. (TCGA)312383598383609Non coding
27. (ATCG)312400227400238Coding
28. (ATCG)312408557408568Coding
29. (GTAT)312412677412688Coding-Non coding
30. (GAGC)312414650414661Coding
31. (TCGA)312414770414781Coding
32. (TCGA)312433146433157Non coding
33. (GCAA)312445490445501Coding
34. (TCGA)312452964452975Coding
35. (ATCG)312469076469087Coding
36. (TGAA)312500253500264Coding
37. (TCGA)312502879502890Coding
38. (GATC)312511411511422Non coding
39. (TTTA)312516120516131Coding
40. (TCGA)312519238519249Coding
41. (ATCG)312520174520185Coding
42. (TCGA)312537400537411Coding
43. (ATCG)312537550537561Coding
44. (AGCG)312542529542540Non coding
45. (TCGA)312560180560191Non coding
46. (TCGA)416591458591473Coding
47. (TCGA)312614518614529Coding
48. (CATC)312632232632243Non coding
49. (GATC)416635785635800Non coding
50. (TTAT)312636286636297Coding
51. (AATA)312651401651412Non coding
52. (TCGA)312667483667494Coding
53. (GATC)312744980744991Coding
54. (TGGA)312764981764992Non coding
55. (GGGT)312785228785239Coding
56. (ATCG)312799940799951Coding
57. (TCGA)312930793930804Non coding
58. (GATA)312951242951253Coding-Non coding
59. (GATC)312980743980754Coding
60. (TTCT)31210156761015687Coding
61. (GATC)31210294511029462Coding
62. (ATCG)31210401231040134Coding
63. (ATCG)31210536771053688Coding
64. (GATC)31210714501071461Coding
65. (TCGA)31210766231076634Coding
66. (TAAA)31210777591077770Non coding
67. (TCGA)31210781261078137Non coding
68. (TCGA)31210782131078224Non coding
69. (TAAA)31210783451078356Non coding
70. (AGCA)31210915951091606Coding
71. (TCGA)31211109501110961Coding
72. (TCGA)31211123121112323Coding
73. (GATC)31211674881167499Coding
74. (CGAT)31211690631169074Coding
75. (AGCC)31211789941179005Coding
76. (CTTT)31212001921200203Coding
77. (TTAT)31212043701204381Non coding
78. (GATC)31212381811238192Non coding
79. (ATTT)31212580301258041Coding-Non coding
80. (GATC)31212637441263755Non coding
81. (ATCG)31212924101292421Coding
82. (GAGC)31213035841303595Coding
83. (TTAT)31213273781327389Non coding
84. (AATA)31213391831339194Non coding
85. (TCGA)31213566671356678Coding
86. (TGAC)31213851731385184Non coding
87. (TCGA)31213891441389155Non coding
88. (GATC)31213909021390913Coding
89. (TCGA)31213959591395970Coding
90. (TCGA)31213990811399092Coding
91. (CCAG)31214141931414204Coding
92. (AGCC)31214536981453709Coding
93. (GATC)31214639321463943Coding
94. (AATA)31214921221492133Non coding
95. (GGCT)31214988981498909Coding
96. (TCGA)31215152221515233Non coding
97. (TCGA)31215160541516065Non coding
98. (GATC)31215252221525233Coding
99. (ATCG)31215728591572870Non coding
100. (TCGA)31216598081659819Coding
101. (AAGG)31217396731739684Coding
102. (TTCG)31217557161755727Coding
103. (TTGT)31218062171806228Coding
104. (CCCG)31218198851819896Coding
105. (TACC)31218274631827474Coding
106. (TCGA)31218340251834036Coding
107. (GATC)31219020651902076Coding
108. (CGAT)31219435861943597Non coding
109. (TCGA)31219576301957641Coding
110. (AATA)31219777691977780Non coding
111. (GCTG)31220634472063458Coding
112. (ATCG)31220638142063825Coding
113. (CTTT)31220732442073255Non coding
114. (ATCA)31220772282077239Coding
115. (CGAT)31220786382078649Coding
116. (GATC)31220986222098633Non coding
117. (ATCG)31221019552101966Coding
118. (TTGT)31221540202154031Coding
119. (CTCG)31221813512181362Coding
120. (GATC)31222483872248398Coding
121. (CGAT)31222611682261179Non coding
122. (CGAT)31222929402292951Coding
123. (AAAG)31223078812307892Coding
124. (ATCG)31223326612332672Coding
125. (GATC)31223390682339079Coding
126. (GATC)31224003392400350Coding
127. (CGAT)31224021162402127Coding
128. (CTTT)31224161962416207Non coding
129. (TCGA)31224501982450209Coding
130. (ATCG)31224658262465837Coding
131. (ATCG)31224776042477615Non coding
132. (ATCG)31224825362482547Non coding
133. (ATCG)31225433662543377Coding
134. (TCGA)31225463572546368Coding
135. (CTTT)31225537862553797Coding
136. (TCGA)31225569592556970Coding
137. (ATCG)31226015372601548Coding
138. (TCGA)31226397272639738Non coding
139. (AGAT)31226835282683539Coding
140. (CGAT)31226863532686364Non coding
141. (TCGA)31226914342691445Coding
142. (CTGG)31227030302703041Coding
143. (TCGA)31227069902707001Coding
144. (TCGA)31227099552709966Coding
145. (TCGA)31227360872736098Non coding
146. (GATC)31227575502757561Coding
147. (TCGA)31227678132767824Coding
148. (AAAG)31227690912769102Coding
149. (ATCG)31227789032778914Coding
150. (TGGA)72827929862793013Non coding
151. (TTTA)31228068882806899Non coding
152. (CGAT)31228088842808895Non coding
153. (AATA)31228641952864206Coding
154. (TCGA)31228722812872292Coding
155. (TAAA)31228872652887276Coding
156. (ATTT)31229131342913145Coding
157. (AGCC)31229180322918043Coding
158. (TAAT)31229280892928100Coding-Non coding
159. (CGAT)31229547592954770Coding
160. (CGAT)41629727042972719Coding
161. (TCGA)31229788292978840Non coding
162. (ATCG)31229795592979570Non coding
163. (TAAT)31229837732983784Non coding
164. (TCTG)31229938462993857Coding
165. (TTTG)31230042693004280Coding
166. (TCGA)31230101683010179Coding
167. (ATCG)31230378603037871Coding
168. (TTAT)31230452323045243Coding
169. (GATC)31230572313057242Coding
170. (ATCG)31230696333069644Coding
171. (CGAT)31230925533092564Coding
172. (CGAT)31231206973120708Coding
173. (CCAC)41631217243121739Non coding
174. (GATC)31231541563154167Coding
175. (GATC)31231644533164464Coding
176. (AATA)31231968303196841Non coding
177. (TTAT)31232017073201718Non coding
178. (CAGC)41632196763219691Coding
179. (GCTG)31232225693222580Coding
180. (TTTG)31232249003224911Coding
181. (GATC)31232371673237178Coding
182. (CGAT)31232785423278553Coding
183. (ATCG)31232901403290151Coding
184. (TCGA)31233314933331504Coding
185. (AATA)31233346583334669Non coding
186. (ATCG)31233386773338688Coding
187. (TCGA)31233721363372147Non coding
188. (TTTA)31234028393402850Non coding
189. (AATT)31234166963416707Coding-Non coding
190. (CGAT)31234200333420044Coding
191. (CGCT)31234430063443017Non coding
192. (ATCG)31234476563447667Coding
193. (AAAG)31234482253448236Non coding
194. (TCGA)31234543603454371Coding
195. (TCGA)31234671753467186Non coding
196. (CGAT)31234841783484189Coding
197. (ATCG)31234855843485595Non coding
198. (TCGA)31234876163487627Coding
199. (TCGA)31234876833487694Coding
200. (TCGA)31234904873490498Coding
201. (TCGA)41635285703528585Coding
202. (GACT)31235344253534436Coding
203. (CGAT)31235478283547839Coding
204. (ATCG)31235717793571790Coding
205. (TTAT)31235934463593457Non coding
206. (GATC)31235940913594102Coding
207. (ATCG)31236185653618576Coding
208. (TCGA)31236273853627396Coding
209. (GATC)31236498613649872Coding
210. (TCGA)31236665353666546Coding
211. (CGAT)31237062703706281Non coding
212. (ATCG)31237472123747223Coding
213. (ATCG)31237506823750693Coding
214. (GGAC)31237585203758531Coding
215. (TCGA)31238320013832012Non coding
216. (TTAG)31238352773835288Non coding
217. (CGAT)31238416083841619Coding
218. (GCTC)31238622723862283Non coding
219. (AATA)31238991853899196Non coding
220. (GATC)31239008213900832Coding
221. (TCGC)31239280053928016Non coding
222. (TCGA)31239653053965316Coding
223. (CGAG)31239704523970463Non coding
224. (GGGT)31239825603982571Non coding
225. (ATCG)31239936223993633Non coding
226. (CTGA)31239996023999613Non coding
227. (AATA)31240241894024200Non coding
228. (TCTT)31240306694030680Coding
229. (CCAC)31240358354035846Non coding
230. (CTTT)31240550184055029Coding
231. (ATGT)31240666604066671Coding
232. (ATCG)31241089754108986Coding
233. (AAAT)31241143824114393Coding
234. (GATC)31241627924162803Non coding
235. (CTCG)31241929004192911Non coding
236. (AGCA)31241944264194437Coding
237. (ACCC)31242273284227339Non coding
238. (AATA)31242358064235817Non coding
239. (TCGA)31242513044251315Coding
240. (GATA)31242586054258616Non coding
241. (CGAT)31242701104270121Coding
242. (CTGG)31242735184273529Coding
243. (ATCG)31242998224299833Coding
244. (TCGA)31243172114317222Non coding
245. (ATCG)31243217634321774Coding
246. (ATCG)31243237084323719Coding
247. (ATCG)41643460624346077Coding
248. (TCGA)31243570694357080Coding
249. (TCGA)41643762354376250Coding
250. (GTTT)31243895174389528Coding
251. (CGAT)31243898864389897Non coding
252. (CGAT)31243958254395836Coding
253. (CTGG)31243970494397060Coding
254. (GATC)31244101064410117Coding
255. (GATC)31244298674429878Coding
256. (TTAT)31244702034470214Coding
257. (GACG)31244731414473152Coding
258. (ACTT)31245142624514273Non coding
259. (AATT)31245262064526217Non coding
260. (ATAC)31245264064526417Non coding
261. (TCGA)31245654704565481Coding
262. (CGAT)31246140224614033Coding
263. (GATC)31246216894621700Coding
264. (CGCT)31246565734656584Coding
265. (CGAT)31246727114672722Coding
266. (TCTA)31246748434674854Non coding
267. (TCGA)31246826224682633Coding
268. (TGGC)41646969194696934Coding
269. (TTGG)31247012364701247Coding
270. (GATC)31247021804702191Coding
271. (TCGA)41647096054709620Coding
272. (TCGA)31247215754721586Coding
273. (GATG)31247387524738763Non coding
274. (GGCT)31247679494767960Coding
275. (ATCG)31247766364776647Coding
276. (CGAT)31247766874776698Coding
277. (CGAC)31247939784793989Coding
278. (GCCA)31248004964800507Coding
279. (AATC)31248192534819264Coding
280. (GATC)31248294004829411Coding
281. (CCAT)31248973624897373Non coding
282. (CGAT)31249024514902462Coding
283. (TCGA)31249084504908461Non coding
284. (AATA)31249165264916537Coding
285. (CCAT)31249384254938436Non coding
286. (AAAT)31250104035010414Coding
287. (ATCG)31250181055018116Coding
288. (AATA)31250355655035576Non coding
289. (TTAA)31250520665052077Non coding
290. (TTAA)31250658255065836Non coding
291. (TTAA)31250760025076013Non coding
292. (CGAT)31251124245112435Non coding
293. (TTGC)31251250445125055Coding
294. (CCAA)31251320605132071Coding
295. (TTGG)31251364045136415Coding
296. (TCGA)41651421055142120Coding
297. (CTCG)31251520505152061Non coding
298. (TCGA)31251678415167852Coding
299. (ATCG)31251885235188534Coding
300. (CCAC)31251941595194170Non coding
301. (CGAT)31252161155216126Coding
302. (GATC)31252197285219739Coding
303. (CAGC)31252761485276159Coding
304. (AAGC)31252816075281618Coding
305. (ATTT)31253136025313613Coding
306. (GTAA)31253163705316381Coding
307. (TCGA)31253526395352650Coding
308. (CCAT)31253564235356434Non coding
309. (TTTA)31253641265364137Coding
310. (CGAT)31253798155379826Coding
311. (ATCG)31254103875410398Non coding
312. (TCGA)31254127255412736Non coding
313. (GATC)31254400975440108Non coding
314. (TGGA)41654609875461002Non coding
315. (GCTG)31254622715462282Coding
316. (CGAT)31254961915496202Non coding
317. (CGAT)31255026035502614Coding
318. (ATCG)31255071245507135Non coding
319. (ATCG)31255086015508612Coding
320. (ATCG)31255160875516098Coding
321. (TCGA)31255579525557963Coding
322. (ATCG)31255652305565241Non coding
323. (CCAC)31255722575572268Coding
324. (CGAT)31255752695575280Coding
325. (GCTG)31255834475583458Non coding
326. (GATC)31255896165589627Coding
327. (GATC)31256128805612891Coding
328. (CAAC)31256284315628442Coding
329. (TCGA)31256377025637713Coding
330. (CGAT)31256446365644647Coding
331. (GATC)31256688545668865Coding
332. (CCAC)31256739925674003Non coding
333. (ATCG)31256830005683011Coding
334. (ATCG)31257299565729967Coding
335. (GAGC)31257430915743102Coding
336. (CGAT)31257506805750691Coding
337. (ATTT)31257865235786534Coding
338. (ATCG)31257970355797046Coding
339. (TCGA)31258056915805702Coding
340. (ATCG)31258354055835416Coding
341. (TCGA)31258757405875751Coding
342. (TCGA)31259231915923202Non coding
343. (TCGA)31259242585924269Coding
344. (TCGA)31259317275931738Coding
345. (TCGA)31259322565932267Non coding
346. (TCGA)31259328535932864Coding
347. (AATA)31259358825935893Non coding
348. (AATA)31259636075963618Non coding
349. (AAAG)31259719435971954Coding
350. (CCAT)31259912025991213Coding
351. (TCGA)31259982525998263Coding
352. (CGAT)31259983345998345Coding
353. (CGAG)31260059126005923Coding
354. (TCGA)31260325176032528Coding
355. (CGAG)31260504966050507Coding
356. (ATCG)31260698716069882Coding
357. (ATCG)31260894866089497Coding
358. (ACTA)31260914726091483Coding-Non coding
359. (ATCG)31261005436100554Coding
360. (CGAT)31261092646109275Coding
361. (ATCG)31261481936148204Coding
362. (ATCG)31261616296161640Coding
363. (TCGA)31261626066162617Coding
364. (CGAT)31261695996169610Coding
365. (TCGA)31262040516204062Coding
366. (CGAG)31262153076215318Coding
367. (CGAT)31262306286230639Non coding
368. (CGAT)31262310616231072Coding
369. (CGAT)31262527446252755Coding
370. (ATTT)41662646496264664Non coding
371. (GATC)31262741956274206Coding
372. (TTGG)31262798526279863Coding
373. (ATCG)31262811776281188Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.