CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Chroococcidiopsis thermalis PCC 7203 (NC_019695 6315793 bp)                                                               Show Primer       Download
Compound : 2     Perfect Compound : 0   Overlapping Compound : 2
Perfect      : 239     Density of SSR      : 1SSR/ 26.21 kb   Average length of SSR  : 12.97 bp
Coding      : 204     Non-Coding           : 31   Coding and Non-Coding : 6
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 1 1 122 93 8 14 239
IMPERFECT 1 188 1849 1758 168 152 4116
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (CGCGAT)31813666241366641Coding
2. (ATCGCG)31819480321948049Coding
3. (CAATCC)31822289742228991Coding
4. (AAAATT)31826028342602851Non coding
5. (GGTGTA)31826094692609486Non coding
6. (AATCTC)31830399893040006Non coding
7. (GACCGC)31830679233067940Coding
8. (TGAAGC)31835271993527216Coding
9. (AATGGG)31847384034738420Coding
10. (CTGCTT)31848619574861974Coding
11. (CGACGG)31849272234927240Coding
12. (GACGAT)31852737845273801Coding
13. (TCTAGC)31854435045443521Coding
14. (AAGACC)31858658665865883Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.