CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Chroococcidiopsis thermalis PCC 7203 (NC_019695 6315793 bp)                                                               Show Primer       Download
Compound : 2     Perfect Compound : 0   Overlapping Compound : 2
Perfect      : 239     Density of SSR      : 1SSR/ 26.21 kb   Average length of SSR  : 12.97 bp
Coding      : 204     Non-Coding           : 31   Coding and Non-Coding : 6
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 1 1 122 93 8 14 239
IMPERFECT 1 188 1849 1758 168 152 4116
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (CAG)41278007811Coding
2. (TTCA)3122572825739Coding-Non coding
3. (GCT)5154513645150Coding
4. (CTGG)3126346663477Coding
5. (TGG)4126438764398Coding
6. (GAGT)3126663166642Coding
7. (TAG)412110999111010Non coding
8. (CAGC)312137761137772Coding
9. (CAAT)312151199151210Coding
10. (ATG)412161977161988Coding
11. (AGG)412170169170180Coding
12. (GTTA)312196665196676Coding-Non coding
13. (AAG)515197069197083Coding
14. (ACG)412219632219643Coding
15. (CAC)412221213221224Coding
16. (CAAA)312268675268686Coding
17. (TTGC)312270757270768Coding
18. (CAC)412293907293918Coding
19. (CCAG)312305264305275Coding
20. (ATTT)312307060307071Coding
21. (GCAA)312309216309227Coding
22. (ACC)412348851348862Coding
23. (GTA)412381363381374Coding
24. (TGGC)416422958422973Coding
25. (CGC)515430851430865Coding
26. (CAC)412498807498818Coding
27. (GAA)412500584500595Coding
28. (CGA)412506858506869Coding
29. (AAGTT)315524029524043Coding
30. (GCT)412530930530941Coding
31. (ACC)412551133551144Coding
32. (CTG)412597717597728Coding
33. (CCG)412613612613623Coding
34. (GCC)412748120748131Coding
35. (AGA)412757534757545Coding
36. (TGC)412767437767448Coding
37. (CGC)412802137802148Coding
38. (TGC)412810799810810Coding
39. (CAAC)312822350822361Coding
40. (ACAA)312877810877821Coding
41. (ACAA)312877888877899Coding
42. (TTG)412933445933456Coding
43. (CTGA)312972187972198Coding
44. (GCG)41210167391016750Coding
45. (GTTG)31210253341025345Non coding
46. (GTT)41210854051085416Non coding
47. (ACCA)31211099141109925Coding
48. (AGC)41211358501135861Coding
49. (TCGA)31211576691157680Non coding
50. (ATTAC)31511959441195958Non coding
51. (AATT)31212133691213380Non coding
52. (TGC)41212150841215095Coding
53. (AATA)31212322491232260Coding
54. (TCTTT)31512783791278393Coding
55. (TTG)41212803871280398Coding
56. (GGTC)31213137221313733Non coding
57. (CAG)41213433891343400Coding
58. (CGCGAT)31813666241366641Coding
59. (CGC)41213765141376525Coding
60. (TAC)41214437771443788Coding
61. (AAAC)31214963331496344Coding
62. (TCC)41215058621505873Coding
63. (GCG)41215536191553630Coding
64. (CGG)41216191171619128Coding
65. (CTAC)31217130991713110Coding
66. (CTG)41217355221735533Coding
67. (AGC)41217366801736691Coding
68. (TGAT)31217703631770374Non coding
69. (GTCC)31217714571771468Coding
70. (ACC)41218080861808097Coding
71. (TGG)61818378291837846Coding
72. (CCAG)31218812491881260Coding
73. (GAA)41219069001906911Coding
74. (CAG)41219243961924407Coding
75. (ATCGCG)31819480321948049Coding
76. (CGAT)31219996051999616Coding
77. (GTCC)31220386322038643Coding
78. (CTTG)31220509592050970Coding
79. (TGT)41220593052059316Coding
80. (AGC)51520621922062206Coding
81. (TTTA)31221030412103052Non coding
82. (GTTG)31221163822116393Coding
83. (TAAA)31221441072144118Coding
84. (GCC)41221764952176506Coding
85. (CAA)41221824752182486Coding
86. (GGTT)31222130512213062Coding
87. (GGTTT)31522141392214153Coding
88. (TTAG)31222203872220398Non coding
89. (CAATCC)31822289742228991Coding
90. (CAG)41222678082267819Coding
91. (TTTA)31222898822289893Coding
92. (ACG)41222976852297696Coding
93. (AGC)41223213832321394Coding
94. (TACC)31223555912355602Coding
95. (TGA)51523818022381816Coding
96. (AAAC)31224041612404172Non coding
97. (ACC)41224237242423735Coding
98. (CAG)41224491272449138Coding
99. (GTCC)31224825162482527Coding
100. (TGTT)31224908432490854Coding
101. (GGGTT)31525414642541478Coding
102. (AGC)41225762272576238Coding
103. (AAAATT)31826028342602851Non coding
104. (GGTGTA)31826094692609486Non coding
105. (GGT)51526143712614385Coding
106. (CATT)31226163122616323Coding-Non coding
107. (GCA)41226188852618896Coding
108. (TTTA)31226627202662731Coding
109. (TGC)41226686572668668Coding
110. (AAT)41226784422678453Coding
111. (CAT)41226944522694463Coding
112. (TGG)41227259192725930Coding
113. (AAG)41227483972748408Coding
114. (ATTTT)31527645822764596Coding
115. (ACA)41227871272787138Coding
116. (AGC)41228943262894337Coding
117. (GCTT)31229061022906113Non coding
118. (GGC)41229104932910504Coding
119. (AGCT)31229944592994470Coding
120. (GCC)41230278373027848Coding
121. (AATCTC)31830399893040006Non coding
122. (CTG)51530564093056423Coding
123. (CAT)41230652563065267Coding
124. (GACCGC)31830679233067940Coding
125. (TGGC)31231050513105062Non coding
126. (CTC)41231270273127038Coding
127. (CAG)41231513123151323Coding
128. (CAA)41231620753162086Coding
129. (GACT)31232723313272342Coding
130. (TTCT)31233320563332067Non coding
131. (AACA)31233371353337146Coding
132. (AGC)41233872483387259Coding
133. (CTAC)31235188523518863Coding
134. (TGAAGC)31835271993527216Coding
135. (TGG)41235317863531797Coding
136. (TTTA)31235321363532147Coding-Non coding
137. (ATTT)31235445803544591Coding
138. (GCT)41235545493554560Coding
139. (ACC)41235577243557735Coding
140. (CAC)41235726863572697Coding
141. (ATCA)31236289513628962Non coding
142. (GTCC)31236554133655424Coding
143. (TAA)41236593303659341Non coding
144. (TGC)41236642843664295Non coding
145. (TTGAA)31537949463794960Non coding
146. (GCT)41238035993803610Coding
147. (ATA)41239836893983700Non coding
148. (AGCA)31239904783990489Non coding
149. (TGG)41239929193992930Coding
150. (TGG)41240125264012537Coding
151. (CAAC)31240575464057557Coding
152. (TC)61241070584107069Coding
153. (AGTC)31241093334109344Coding
154. (TGGC)31241216094121620Coding
155. (CAG)41241707484170759Coding
156. (AAC)41241891684189179Coding
157. (ACCG)31241900784190089Coding
158. (TTAT)31242823804282391Coding
159. (TAG)41243230714323082Coding
160. (CGC)41243356784335689Coding
161. (GAT)41243563734356384Coding
162. (TGG)41244199224419933Coding
163. (TGCC)31244745494474560Coding
164. (AGA)41244996764499687Coding
165. (CGAT)31245059644505975Coding
166. (CGAT)31245210634521074Coding
167. (CAAC)31245429814542992Coding
168. (GGC)41245464034546414Coding
169. (GCA)51545655224565536Coding
170. (GCG)41246001824600193Coding
171. (TCG)51546543334654347Coding
172. (CTGG)31246587714658782Coding
173. (CAGT)31246685144668525Coding
174. (C)151546732144673228Coding
175. (GTTG)31247000624700073Coding
176. (CCA)41247176434717654Coding
177. (GGT)41247329294732940Coding
178. (AATGGG)31847384034738420Coding
179. (ACT)51547607654760779Non coding
180. (GCC)41247943644794375Coding
181. (GGTT)31248556964855707Coding
182. (TGC)41248617784861789Coding
183. (CTGCTT)31848619574861974Coding
184. (TGG)41248719124871923Coding
185. (CAC)41248949464894957Coding
186. (CAA)41249005814900592Coding
187. (AATC)31249128954912906Coding
188. (CGACGG)31849272234927240Coding
189. (CGC)61849277964927813Coding
190. (ACT)82449279274927950Coding
191. (TTGC)31250282485028259Coding
192. (CAC)41251377605137771Coding
193. (CTTG)31251409575140968Coding
194. (TTG)41252043675204378Non coding
195. (GTTTG)31552122595212273Coding
196. (AATA)31252447385244749Coding
197. (ATTA)31252471035247114Coding-Non coding
198. (GACGAT)31852737845273801Coding
199. (GAT)41252756775275688Coding
200. (CAAA)31253276815327692Coding
201. (TAGA)31253431315343142Non coding
202. (TGC)41253924235392434Coding
203. (TCTAGC)31854435045443521Coding
204. (ATTT)31254693335469344Coding
205. (CAA)41254838745483885Coding
206. (CTTG)31255018445501855Coding
207. (CGG)41255501895550200Coding
208. (TGGC)31255675705567581Coding
209. (TGC)41255690315569042Coding
210. (GTCG)31255813255581336Non coding
211. (TTTA)31255888195588830Coding
212. (CAG)41255987165598727Coding
213. (TAAT)31256071605607171Coding
214. (GTTG)31256196565619667Coding
215. (GGC)41256437805643791Coding
216. (GCTG)31256481475648158Coding
217. (ATTT)31256779695677980Non coding
218. (ATCT)31257517375751748Coding-Non coding
219. (TAT)41258035895803600Non coding
220. (GCT)41258239625823973Coding
221. (GCT)41258347125834723Coding
222. (CCG)41258381005838111Coding
223. (AAGACC)31858658665865883Coding
224. (ATCG)31258805975880608Coding
225. (AACA)31258929545892965Coding
226. (AGCT)31259103095910320Coding
227. (CTG)41259810105981021Coding
228. (GCT)41260030866003097Coding
229. (AAGT)31260303146030325Coding
230. (AACA)31260404296040440Coding
231. (GGT)41260493556049366Coding
232. (TTG)41260583156058326Coding
233. (ATTT)31260826746082685Coding
234. (ATAA)31261156706115681Non coding
235. (GGC)41262187296218740Coding
236. (CAC)41262415626241573Coding
237. (ATCG)31262568066256817Coding
238. (TACA)31262827136282724Non coding
239. (GCA)41262960066296017Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.