CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Chroococcidiopsis thermalis PCC 7203 (NC_019695 6315793 bp)                                                               Show Primer       Download
Compound : 2     Perfect Compound : 0   Overlapping Compound : 2
Perfect      : 239     Density of SSR      : 1SSR/ 26.21 kb   Average length of SSR  : 12.97 bp
Coding      : 204     Non-Coding           : 31   Coding and Non-Coding : 6
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 1 1 122 93 8 14 239
IMPERFECT 1 188 1849 1758 168 152 4116
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (CAG)41278007811Coding
2. (GCT)5154513645150Coding
3. (TGG)4126438764398Coding
4. (TAG)412110999111010Non coding
5. (ATG)412161977161988Coding
6. (AGG)412170169170180Coding
7. (AAG)515197069197083Coding
8. (ACG)412219632219643Coding
9. (CAC)412221213221224Coding
10. (CAC)412293907293918Coding
11. (ACC)412348851348862Coding
12. (GTA)412381363381374Coding
13. (CGC)515430851430865Coding
14. (CAC)412498807498818Coding
15. (GAA)412500584500595Coding
16. (CGA)412506858506869Coding
17. (GCT)412530930530941Coding
18. (ACC)412551133551144Coding
19. (CTG)412597717597728Coding
20. (CCG)412613612613623Coding
21. (GCC)412748120748131Coding
22. (AGA)412757534757545Coding
23. (TGC)412767437767448Coding
24. (CGC)412802137802148Coding
25. (TGC)412810799810810Coding
26. (TTG)412933445933456Coding
27. (GCG)41210167391016750Coding
28. (GTT)41210854051085416Non coding
29. (AGC)41211358501135861Coding
30. (TGC)41212150841215095Coding
31. (TTG)41212803871280398Coding
32. (CAG)41213433891343400Coding
33. (CGC)41213765141376525Coding
34. (TAC)41214437771443788Coding
35. (TCC)41215058621505873Coding
36. (GCG)41215536191553630Coding
37. (CGG)41216191171619128Coding
38. (CTG)41217355221735533Coding
39. (AGC)41217366801736691Coding
40. (ACC)41218080861808097Coding
41. (TGG)61818378291837846Coding
42. (GAA)41219069001906911Coding
43. (CAG)41219243961924407Coding
44. (TGT)41220593052059316Coding
45. (AGC)51520621922062206Coding
46. (GCC)41221764952176506Coding
47. (CAA)41221824752182486Coding
48. (CAG)41222678082267819Coding
49. (ACG)41222976852297696Coding
50. (AGC)41223213832321394Coding
51. (TGA)51523818022381816Coding
52. (ACC)41224237242423735Coding
53. (CAG)41224491272449138Coding
54. (AGC)41225762272576238Coding
55. (GGT)51526143712614385Coding
56. (GCA)41226188852618896Coding
57. (TGC)41226686572668668Coding
58. (AAT)41226784422678453Coding
59. (CAT)41226944522694463Coding
60. (TGG)41227259192725930Coding
61. (AAG)41227483972748408Coding
62. (ACA)41227871272787138Coding
63. (AGC)41228943262894337Coding
64. (GGC)41229104932910504Coding
65. (GCC)41230278373027848Coding
66. (CTG)51530564093056423Coding
67. (CAT)41230652563065267Coding
68. (CTC)41231270273127038Coding
69. (CAG)41231513123151323Coding
70. (CAA)41231620753162086Coding
71. (AGC)41233872483387259Coding
72. (TGG)41235317863531797Coding
73. (GCT)41235545493554560Coding
74. (ACC)41235577243557735Coding
75. (CAC)41235726863572697Coding
76. (TAA)41236593303659341Non coding
77. (TGC)41236642843664295Non coding
78. (GCT)41238035993803610Coding
79. (ATA)41239836893983700Non coding
80. (TGG)41239929193992930Coding
81. (TGG)41240125264012537Coding
82. (CAG)41241707484170759Coding
83. (AAC)41241891684189179Coding
84. (TAG)41243230714323082Coding
85. (CGC)41243356784335689Coding
86. (GAT)41243563734356384Coding
87. (TGG)41244199224419933Coding
88. (AGA)41244996764499687Coding
89. (GGC)41245464034546414Coding
90. (GCA)51545655224565536Coding
91. (GCG)41246001824600193Coding
92. (TCG)51546543334654347Coding
93. (CCA)41247176434717654Coding
94. (GGT)41247329294732940Coding
95. (ACT)51547607654760779Non coding
96. (GCC)41247943644794375Coding
97. (TGC)41248617784861789Coding
98. (TGG)41248719124871923Coding
99. (CAC)41248949464894957Coding
100. (CAA)41249005814900592Coding
101. (CGC)61849277964927813Coding
102. (ACT)82449279274927950Coding
103. (CAC)41251377605137771Coding
104. (TTG)41252043675204378Non coding
105. (GAT)41252756775275688Coding
106. (TGC)41253924235392434Coding
107. (CAA)41254838745483885Coding
108. (CGG)41255501895550200Coding
109. (TGC)41255690315569042Coding
110. (CAG)41255987165598727Coding
111. (GGC)41256437805643791Coding
112. (TAT)41258035895803600Non coding
113. (GCT)41258239625823973Coding
114. (GCT)41258347125834723Coding
115. (CCG)41258381005838111Coding
116. (CTG)41259810105981021Coding
117. (GCT)41260030866003097Coding
118. (GGT)41260493556049366Coding
119. (TTG)41260583156058326Coding
120. (GGC)41262187296218740Coding
121. (CAC)41262415626241573Coding
122. (GCA)41262960066296017Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.