CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Chroococcidiopsis thermalis PCC 7203 (NC_019695 6315793 bp)                                                               Show Primer       Download
Compound : 2     Perfect Compound : 0   Overlapping Compound : 2
Perfect      : 239     Density of SSR      : 1SSR/ 26.21 kb   Average length of SSR  : 12.97 bp
Coding      : 204     Non-Coding           : 31   Coding and Non-Coding : 6
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 1 1 122 93 8 14 239
IMPERFECT 1 188 1849 1758 168 152 4116
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (TTCA)3122572825739Coding-Non coding
2. (CTGG)3126346663477Coding
3. (GAGT)3126663166642Coding
4. (CAGC)312137761137772Coding
5. (CAAT)312151199151210Coding
6. (GTTA)312196665196676Coding-Non coding
7. (CAAA)312268675268686Coding
8. (TTGC)312270757270768Coding
9. (CCAG)312305264305275Coding
10. (ATTT)312307060307071Coding
11. (GCAA)312309216309227Coding
12. (TGGC)416422958422973Coding
13. (CAAC)312822350822361Coding
14. (ACAA)312877810877821Coding
15. (ACAA)312877888877899Coding
16. (CTGA)312972187972198Coding
17. (GTTG)31210253341025345Non coding
18. (ACCA)31211099141109925Coding
19. (TCGA)31211576691157680Non coding
20. (AATT)31212133691213380Non coding
21. (AATA)31212322491232260Coding
22. (GGTC)31213137221313733Non coding
23. (AAAC)31214963331496344Coding
24. (CTAC)31217130991713110Coding
25. (TGAT)31217703631770374Non coding
26. (GTCC)31217714571771468Coding
27. (CCAG)31218812491881260Coding
28. (CGAT)31219996051999616Coding
29. (GTCC)31220386322038643Coding
30. (CTTG)31220509592050970Coding
31. (TTTA)31221030412103052Non coding
32. (GTTG)31221163822116393Coding
33. (TAAA)31221441072144118Coding
34. (GGTT)31222130512213062Coding
35. (TTAG)31222203872220398Non coding
36. (TTTA)31222898822289893Coding
37. (TACC)31223555912355602Coding
38. (AAAC)31224041612404172Non coding
39. (GTCC)31224825162482527Coding
40. (TGTT)31224908432490854Coding
41. (CATT)31226163122616323Coding-Non coding
42. (TTTA)31226627202662731Coding
43. (GCTT)31229061022906113Non coding
44. (AGCT)31229944592994470Coding
45. (TGGC)31231050513105062Non coding
46. (GACT)31232723313272342Coding
47. (TTCT)31233320563332067Non coding
48. (AACA)31233371353337146Coding
49. (CTAC)31235188523518863Coding
50. (TTTA)31235321363532147Coding-Non coding
51. (ATTT)31235445803544591Coding
52. (ATCA)31236289513628962Non coding
53. (GTCC)31236554133655424Coding
54. (AGCA)31239904783990489Non coding
55. (CAAC)31240575464057557Coding
56. (AGTC)31241093334109344Coding
57. (TGGC)31241216094121620Coding
58. (ACCG)31241900784190089Coding
59. (TTAT)31242823804282391Coding
60. (TGCC)31244745494474560Coding
61. (CGAT)31245059644505975Coding
62. (CGAT)31245210634521074Coding
63. (CAAC)31245429814542992Coding
64. (CTGG)31246587714658782Coding
65. (CAGT)31246685144668525Coding
66. (GTTG)31247000624700073Coding
67. (GGTT)31248556964855707Coding
68. (AATC)31249128954912906Coding
69. (TTGC)31250282485028259Coding
70. (CTTG)31251409575140968Coding
71. (AATA)31252447385244749Coding
72. (ATTA)31252471035247114Coding-Non coding
73. (CAAA)31253276815327692Coding
74. (TAGA)31253431315343142Non coding
75. (ATTT)31254693335469344Coding
76. (CTTG)31255018445501855Coding
77. (TGGC)31255675705567581Coding
78. (GTCG)31255813255581336Non coding
79. (TTTA)31255888195588830Coding
80. (TAAT)31256071605607171Coding
81. (GTTG)31256196565619667Coding
82. (GCTG)31256481475648158Coding
83. (ATTT)31256779695677980Non coding
84. (ATCT)31257517375751748Coding-Non coding
85. (ATCG)31258805975880608Coding
86. (AACA)31258929545892965Coding
87. (AGCT)31259103095910320Coding
88. (AAGT)31260303146030325Coding
89. (AACA)31260404296040440Coding
90. (ATTT)31260826746082685Coding
91. (ATAA)31261156706115681Non coding
92. (ATCG)31262568066256817Coding
93. (TACA)31262827136282724Non coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.