CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Crinalium epipsammum PCC 9333 (NC_019753 5315555 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 274     Density of SSR      : 1SSR/ 19.4 kb   Average length of SSR  : 12.88 bp
Coding      : 215     Non-Coding           : 57   Coding and Non-Coding : 2
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 2 3 153 97 6 13 274
IMPERFECT 10 165 1880 1482 141 153 3831
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (TTTG)3122247222483Coding
2. (AATT)3124393143942Coding
3. (TTC)412107388107399Non coding
4. (TTC)412110090110101Non coding
5. (AT)612145232145243Non coding
6. (TTC)412155039155050Non coding
7. (TGG)412175010175021Coding
8. (CATA)312206025206036Non coding
9. (TTC)412236156236167Coding
10. (GACCAC)318248345248362Coding
11. (TTC)412252798252809Non coding
12. (GCA)412259139259150Coding
13. (AGC)412273634273645Coding
14. (ACC)412296640296651Coding
15. (AGA)412328944328955Coding
16. (AAC)412357466357477Coding
17. (CAAA)312357669357680Non coding
18. (AACA)312425984425995Coding
19. (TGC)412447462447473Coding
20. (CAAT)312498367498378Coding
21. (AAC)412512532512543Coding
22. (ATT)412521101521112Coding-Non coding
23. (GTTG)312539333539344Coding
24. (GAA)412544439544450Coding
25. (AATA)312565493565504Non coding
26. (CAAA)312580712580723Coding
27. (TTC)412595207595218Coding
28. (TGA)412646136646147Coding
29. (GTT)412730034730045Non coding
30. (CAT)412733646733657Coding
31. (CTT)412837908837919Coding
32. (CAC)412889328889339Coding
33. (TATT)312899351899362Coding
34. (TTGC)312944747944758Coding
35. (CAG)412971268971279Coding
36. (GCG)412981351981362Coding
37. (GCA)41210176311017642Coding
38. (TGC)41210263971026408Coding
39. (GAA)41210489921049003Non coding
40. (GGT)41210529711052982Coding
41. (GA)61211260061126017Non coding
42. (AAG)41211283481128359Coding
43. (TGA)41211468261146837Coding
44. (AGTA)31211656301165641Non coding
45. (TGG)61811660801166097Coding
46. (ACC)41212105411210552Coding
47. (CAA)41212246591224670Coding
48. (CTG)41212591581259169Coding
49. (TTTG)31212796191279630Coding
50. (ACAACT)31812893921289409Coding
51. (ATA)41213230441323055Coding
52. (CCG)51513445661344580Coding
53. (AACT)31213790771379088Coding
54. (TTTG)31213918311391842Coding
55. (CCTTTG)31814009601400977Coding
56. (AGA)41214899411489952Coding
57. (GAT)51514900021490016Coding
58. (TAA)41214943051494316Non coding
59. (TTC)41214982741498285Non coding
60. (GGC)41215384891538500Coding
61. (TGC)41215476841547695Coding
62. (TAA)41215573281557339Coding
63. (TGC)41215708711570882Coding
64. (GGAG)31215718281571839Non coding
65. (TTAT)31215722941572305Coding
66. (AAG)41215755541575565Coding
67. (CAG)41215805331580544Coding
68. (GAA)41216086671608678Non coding
69. (TGAC)31216148751614886Coding
70. (TTTCT)31516199201619934Non coding
71. (GAA)41216250671625078Non coding
72. (TTAT)31216307461630757Non coding
73. (AGC)51516526201652634Coding
74. (AGATCT)31816528481652865Coding
75. (TTC)41217051161705127Non coding
76. (ATAGA)31517206671720681Non coding
77. (GTG)41217429331742944Coding
78. (ATC)41217559001755911Coding
79. (GCA)41217907371790748Coding
80. (TAA)41218010361801047Coding
81. (TTC)41218095171809528Coding
82. (ATTT)31218476141847625Coding
83. (CAAA)31218525631852574Coding
84. (CTA)41218784241878435Coding
85. (TGCT)31218786711878682Coding
86. (AATA)31219435971943608Non coding
87. (TTCT)31219453331945344Coding
88. (AAAG)31219565141956525Coding
89. (CTG)41219568991956910Coding
90. (CCAGTA)42419922301992253Coding
91. (GAGT)31220187612018772Non coding
92. (CAAG)31220417152041726Coding
93. (TGC)41220531932053204Coding
94. (TTC)41220603992060410Non coding
95. (CGGAT)31520923952092409Coding
96. (CCAA)31221174432117454Coding
97. (GGT)41221217212121732Coding
98. (ATCC)31221561322156143Coding
99. (ATGG)31222047822204793Coding
100. (A)121222141192214130Non coding
101. (GCT)41222192562219267Coding
102. (ACTT)31222227432222754Coding
103. (CCA)41222350572235068Coding
104. (AACC)31222385822238593Coding
105. (GTCG)31222564412256452Coding
106. (AAG)41222616502261661Coding
107. (TAG)41222635862263597Coding
108. (TCA)41222658332265844Coding
109. (ATTT)31222783982278409Coding
110. (GAT)41222959052295916Coding
111. (AAT)41223109502310961Coding
112. (TTC)41223277272327738Non coding
113. (AGG)41223634202363431Non coding
114. (CAG)41223671132367124Coding
115. (GTG)41223671492367160Coding
116. (GTG)72123671732367193Coding
117. (ACC)41224035682403579Coding
118. (CTG)41224215552421566Non coding
119. (AGC)41224396662439677Coding
120. (CATT)31224676282467639Coding
121. (CTGA)31224981812498192Coding
122. (GCG)61825330282533045Coding
123. (GTTG)31225390192539030Coding
124. (GCG)41225441312544142Coding
125. (TCA)41225473922547403Coding
126. (AATT)31225485182548529Coding
127. (TATC)31225558972555908Non coding
128. (TGAA)31225815362581547Coding
129. (GGAGA)31525851062585120Non coding
130. (ATAA)31226766012676612Non coding
131. (GAA)41226860822686093Non coding
132. (CGC)41226938412693852Coding
133. (AAAT)31227026872702698Coding
134. (GCTG)31227291392729150Coding
135. (ACCA)31227419272741938Coding
136. (GAA)51527599452759959Coding
137. (ATCC)31227630882763099Coding
138. (GGAG)72827636012763628Non coding
139. (TAG)41227710712771082Coding
140. (TCA)61827825002782517Coding
141. (AAGT)31227956832795694Coding
142. (CGG)41228180122818023Coding
143. (TAAA)31228211002821111Non coding
144. (C)131328224062822418Non coding
145. (ACC)41228476172847628Coding
146. (CTG)41228530952853106Coding
147. (TTC)41228537412853752Non coding
148. (TTTG)31228832252883236Non coding
149. (ATTT)31228881122888123Non coding
150. (TAAA)31229381602938171Non coding
151. (CTG)41229915782991589Coding
152. (AAT)41230153363015347Coding
153. (AGTT)31230182713018282Coding
154. (GCT)41230247123024723Coding
155. (GGC)51530534743053488Coding
156. (GGTGGC)31830535073053524Coding
157. (ATC)41231099603109971Coding
158. (TTTA)31231449793144990Non coding
159. (TTC)41231556093155620Non coding
160. (TTAT)31231583273158338Coding
161. (AAG)41231640333164044Coding
162. (GGT)41231712593171270Coding
163. (GCG)41231717903171801Coding
164. (TTGC)31232020683202079Coding
165. (CAAC)31232116343211645Coding
166. (AGA)41232364423236453Coding
167. (CAG)41232405233240534Coding
168. (AATT)31232455123245523Coding
169. (GGT)51532826553282669Coding
170. (TGGC)31232986673298678Coding
171. (CAC)41233075043307515Coding
172. (AT)61233231723323183Non coding
173. (ACC)41234761033476114Coding
174. (AGA)41235171303517141Coding
175. (CAG)41235222203522231Coding
176. (GAT)51535319313531945Coding
177. (TAGCCC)31835427243542741Coding
178. (CCTG)31235778923577903Coding
179. (CCTG)31235780873578098Coding
180. (CCTG)31235786573578668Coding
181. (CCTG)31235788523578863Coding
182. (TTTG)31235989333598944Coding
183. (GCA)41235995943599605Coding
184. (GTTG)31236136823613693Coding
185. (ACC)41236360913636102Coding
186. (AGC)41236787453678756Coding
187. (ACAT)31236933623693373Coding
188. (CTT)41237046243704635Coding
189. (TCC)51537084603708474Coding
190. (GTT)41237184103718421Coding
191. (CTG)41237221773722188Coding
192. (TAA)41237285133728524Coding
193. (AAAC)31237476633747674Coding
194. (TCAA)31237677293767740Non coding
195. (CAC)41237709913771002Coding
196. (TGA)41237718793771890Coding
197. (CGG)72137875803787600Coding
198. (TGC)41238064533806464Coding
199. (CTG)41238116413811652Coding
200. (AGA)41238438733843884Coding
201. (GCT)41238560193856030Coding
202. (GTT)41238847693884780Coding
203. (GAA)41238866073886618Non coding
204. (ATCC)31239010413901052Coding
205. (TTC)41239112293911240Coding
206. (AGTA)31239279373927948Non coding
207. (CCTC)31239457583945769Non coding
208. (TAAA)31240114904011501Coding
209. (TCAA)31240177584017769Coding
210. (ATTA)31240365334036544Non coding
211. (AATA)31240552794055290Coding
212. (CAG)51540755394075553Coding
213. (TTTA)31241230894123100Non coding
214. (GCT)41241391394139150Coding
215. (ATTT)31241752044175215Coding
216. (ATTT)31241877044187715Coding
217. (CAC)51541942164194230Coding
218. (AAC)41241952454195256Coding
219. (TAGCAT)31841966354196652Coding
220. (TGAG)31242476384247649Non coding
221. (TGG)51542790314279045Coding
222. (GCT)41242796434279654Coding
223. (TTTA)31243414754341486Non coding
224. (TGT)41243884224388433Coding
225. (CCCT)31244082704408281Non coding
226. (TAAA)31244096824409693Non coding
227. (AACC)31244160244416035Coding
228. (ATGA)31244236764423687Coding
229. (CCA)41244302904430301Coding
230. (CAACTT)31844693714469388Coding
231. (ATT)41244810864481097Coding
232. (ATT)41244900334490044Coding
233. (CCAG)31244907394490750Coding
234. (TTA)41245618434561854Coding
235. (ACC)41245682614568272Coding
236. (TCG)41245808864580897Coding
237. (GCA)41246381894638200Coding
238. (TTTA)31246506854650696Non coding
239. (TAG)41246601404660151Coding
240. (CAC)41246740844674095Coding
241. (AAAC)31246745804674591Coding
242. (ATTA)31246793704679381Non coding
243. (TCAA)31246930764693087Coding
244. (AAAT)31247281574728168Coding
245. (TGT)41247518454751856Non coding
246. (CAA)41247603864760397Coding
247. (AAATA)31547764254776439Coding
248. (GCA)41247783914778402Coding
249. (CTA)41247825314782542Coding
250. (ATTG)31247852994785310Coding
251. (CTG)41248108074810818Coding
252. (CCAA)31248522554852266Coding
253. (TAC)51548539214853935Coding
254. (CAC)41248550794855090Coding
255. (AAACCT)31848991944899211Coding
256. (GCG)51549186494918663Coding
257. (GCC)51549273414927355Coding
258. (TTTG)31249538594953870Coding
259. (TTAAC)31549846604984674Non coding
260. (TCA)41250039495003960Coding
261. (CCAA)31250258535025864Coding
262. (ACTT)31250507505050761Coding
263. (TAT)41250858695085880Coding
264. (CAGCAC)53050916565091685Coding
265. (AGCACC)84850917505091797Coding
266. (GACCAC)31850948895094906Coding
267. (TTA)41251203965120407Non coding
268. (TATT)31251479445147955Coding-Non coding
269. (ACC)41251644655164476Coding
270. (CTG)41251955885195599Coding
271. (TCAT)31251995105199521Coding
272. (CCA)41252440975244108Coding
273. (AGC)51552477945247808Coding
274. (TGCT)31253114625311473Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.