CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Crinalium epipsammum PCC 9333 (NC_019753 5315555 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 274     Density of SSR      : 1SSR/ 19.4 kb   Average length of SSR  : 12.88 bp
Coding      : 215     Non-Coding           : 57   Coding and Non-Coding : 2
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 2 3 153 97 6 13 274
IMPERFECT 10 165 1880 1482 141 153 3831
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (TTC)412107388107399Non coding
2. (TTC)412110090110101Non coding
3. (TTC)412155039155050Non coding
4. (TGG)412175010175021Coding
5. (TTC)412236156236167Coding
6. (TTC)412252798252809Non coding
7. (GCA)412259139259150Coding
8. (AGC)412273634273645Coding
9. (ACC)412296640296651Coding
10. (AGA)412328944328955Coding
11. (AAC)412357466357477Coding
12. (TGC)412447462447473Coding
13. (AAC)412512532512543Coding
14. (ATT)412521101521112Coding-Non coding
15. (GAA)412544439544450Coding
16. (TTC)412595207595218Coding
17. (TGA)412646136646147Coding
18. (GTT)412730034730045Non coding
19. (CAT)412733646733657Coding
20. (CTT)412837908837919Coding
21. (CAC)412889328889339Coding
22. (CAG)412971268971279Coding
23. (GCG)412981351981362Coding
24. (GCA)41210176311017642Coding
25. (TGC)41210263971026408Coding
26. (GAA)41210489921049003Non coding
27. (GGT)41210529711052982Coding
28. (AAG)41211283481128359Coding
29. (TGA)41211468261146837Coding
30. (TGG)61811660801166097Coding
31. (ACC)41212105411210552Coding
32. (CAA)41212246591224670Coding
33. (CTG)41212591581259169Coding
34. (ATA)41213230441323055Coding
35. (CCG)51513445661344580Coding
36. (AGA)41214899411489952Coding
37. (GAT)51514900021490016Coding
38. (TAA)41214943051494316Non coding
39. (TTC)41214982741498285Non coding
40. (GGC)41215384891538500Coding
41. (TGC)41215476841547695Coding
42. (TAA)41215573281557339Coding
43. (TGC)41215708711570882Coding
44. (AAG)41215755541575565Coding
45. (CAG)41215805331580544Coding
46. (GAA)41216086671608678Non coding
47. (GAA)41216250671625078Non coding
48. (AGC)51516526201652634Coding
49. (TTC)41217051161705127Non coding
50. (GTG)41217429331742944Coding
51. (ATC)41217559001755911Coding
52. (GCA)41217907371790748Coding
53. (TAA)41218010361801047Coding
54. (TTC)41218095171809528Coding
55. (CTA)41218784241878435Coding
56. (CTG)41219568991956910Coding
57. (TGC)41220531932053204Coding
58. (TTC)41220603992060410Non coding
59. (GGT)41221217212121732Coding
60. (GCT)41222192562219267Coding
61. (CCA)41222350572235068Coding
62. (AAG)41222616502261661Coding
63. (TAG)41222635862263597Coding
64. (TCA)41222658332265844Coding
65. (GAT)41222959052295916Coding
66. (AAT)41223109502310961Coding
67. (TTC)41223277272327738Non coding
68. (AGG)41223634202363431Non coding
69. (CAG)41223671132367124Coding
70. (GTG)41223671492367160Coding
71. (GTG)72123671732367193Coding
72. (ACC)41224035682403579Coding
73. (CTG)41224215552421566Non coding
74. (AGC)41224396662439677Coding
75. (GCG)61825330282533045Coding
76. (GCG)41225441312544142Coding
77. (TCA)41225473922547403Coding
78. (GAA)41226860822686093Non coding
79. (CGC)41226938412693852Coding
80. (GAA)51527599452759959Coding
81. (TAG)41227710712771082Coding
82. (TCA)61827825002782517Coding
83. (CGG)41228180122818023Coding
84. (ACC)41228476172847628Coding
85. (CTG)41228530952853106Coding
86. (TTC)41228537412853752Non coding
87. (CTG)41229915782991589Coding
88. (AAT)41230153363015347Coding
89. (GCT)41230247123024723Coding
90. (GGC)51530534743053488Coding
91. (ATC)41231099603109971Coding
92. (TTC)41231556093155620Non coding
93. (AAG)41231640333164044Coding
94. (GGT)41231712593171270Coding
95. (GCG)41231717903171801Coding
96. (AGA)41232364423236453Coding
97. (CAG)41232405233240534Coding
98. (GGT)51532826553282669Coding
99. (CAC)41233075043307515Coding
100. (ACC)41234761033476114Coding
101. (AGA)41235171303517141Coding
102. (CAG)41235222203522231Coding
103. (GAT)51535319313531945Coding
104. (GCA)41235995943599605Coding
105. (ACC)41236360913636102Coding
106. (AGC)41236787453678756Coding
107. (CTT)41237046243704635Coding
108. (TCC)51537084603708474Coding
109. (GTT)41237184103718421Coding
110. (CTG)41237221773722188Coding
111. (TAA)41237285133728524Coding
112. (CAC)41237709913771002Coding
113. (TGA)41237718793771890Coding
114. (CGG)72137875803787600Coding
115. (TGC)41238064533806464Coding
116. (CTG)41238116413811652Coding
117. (AGA)41238438733843884Coding
118. (GCT)41238560193856030Coding
119. (GTT)41238847693884780Coding
120. (GAA)41238866073886618Non coding
121. (TTC)41239112293911240Coding
122. (CAG)51540755394075553Coding
123. (GCT)41241391394139150Coding
124. (CAC)51541942164194230Coding
125. (AAC)41241952454195256Coding
126. (TGG)51542790314279045Coding
127. (GCT)41242796434279654Coding
128. (TGT)41243884224388433Coding
129. (CCA)41244302904430301Coding
130. (ATT)41244810864481097Coding
131. (ATT)41244900334490044Coding
132. (TTA)41245618434561854Coding
133. (ACC)41245682614568272Coding
134. (TCG)41245808864580897Coding
135. (GCA)41246381894638200Coding
136. (TAG)41246601404660151Coding
137. (CAC)41246740844674095Coding
138. (TGT)41247518454751856Non coding
139. (CAA)41247603864760397Coding
140. (GCA)41247783914778402Coding
141. (CTA)41247825314782542Coding
142. (CTG)41248108074810818Coding
143. (TAC)51548539214853935Coding
144. (CAC)41248550794855090Coding
145. (GCG)51549186494918663Coding
146. (GCC)51549273414927355Coding
147. (TCA)41250039495003960Coding
148. (TAT)41250858695085880Coding
149. (TTA)41251203965120407Non coding
150. (ACC)41251644655164476Coding
151. (CTG)41251955885195599Coding
152. (CCA)41252440975244108Coding
153. (AGC)51552477945247808Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.