CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Crinalium epipsammum PCC 9333 (NC_019753 5315555 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 274     Density of SSR      : 1SSR/ 19.4 kb   Average length of SSR  : 12.88 bp
Coding      : 215     Non-Coding           : 57   Coding and Non-Coding : 2
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 2 3 153 97 6 13 274
IMPERFECT 10 165 1880 1482 141 153 3831
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (TTTG)3122247222483Coding
2. (AATT)3124393143942Coding
3. (CATA)312206025206036Non coding
4. (CAAA)312357669357680Non coding
5. (AACA)312425984425995Coding
6. (CAAT)312498367498378Coding
7. (GTTG)312539333539344Coding
8. (AATA)312565493565504Non coding
9. (CAAA)312580712580723Coding
10. (TATT)312899351899362Coding
11. (TTGC)312944747944758Coding
12. (AGTA)31211656301165641Non coding
13. (TTTG)31212796191279630Coding
14. (AACT)31213790771379088Coding
15. (TTTG)31213918311391842Coding
16. (GGAG)31215718281571839Non coding
17. (TTAT)31215722941572305Coding
18. (TGAC)31216148751614886Coding
19. (TTAT)31216307461630757Non coding
20. (ATTT)31218476141847625Coding
21. (CAAA)31218525631852574Coding
22. (TGCT)31218786711878682Coding
23. (AATA)31219435971943608Non coding
24. (TTCT)31219453331945344Coding
25. (AAAG)31219565141956525Coding
26. (GAGT)31220187612018772Non coding
27. (CAAG)31220417152041726Coding
28. (CCAA)31221174432117454Coding
29. (ATCC)31221561322156143Coding
30. (ATGG)31222047822204793Coding
31. (ACTT)31222227432222754Coding
32. (AACC)31222385822238593Coding
33. (GTCG)31222564412256452Coding
34. (ATTT)31222783982278409Coding
35. (CATT)31224676282467639Coding
36. (CTGA)31224981812498192Coding
37. (GTTG)31225390192539030Coding
38. (AATT)31225485182548529Coding
39. (TATC)31225558972555908Non coding
40. (TGAA)31225815362581547Coding
41. (ATAA)31226766012676612Non coding
42. (AAAT)31227026872702698Coding
43. (GCTG)31227291392729150Coding
44. (ACCA)31227419272741938Coding
45. (ATCC)31227630882763099Coding
46. (GGAG)72827636012763628Non coding
47. (AAGT)31227956832795694Coding
48. (TAAA)31228211002821111Non coding
49. (TTTG)31228832252883236Non coding
50. (ATTT)31228881122888123Non coding
51. (TAAA)31229381602938171Non coding
52. (AGTT)31230182713018282Coding
53. (TTTA)31231449793144990Non coding
54. (TTAT)31231583273158338Coding
55. (TTGC)31232020683202079Coding
56. (CAAC)31232116343211645Coding
57. (AATT)31232455123245523Coding
58. (TGGC)31232986673298678Coding
59. (CCTG)31235778923577903Coding
60. (CCTG)31235780873578098Coding
61. (CCTG)31235786573578668Coding
62. (CCTG)31235788523578863Coding
63. (TTTG)31235989333598944Coding
64. (GTTG)31236136823613693Coding
65. (ACAT)31236933623693373Coding
66. (AAAC)31237476633747674Coding
67. (TCAA)31237677293767740Non coding
68. (ATCC)31239010413901052Coding
69. (AGTA)31239279373927948Non coding
70. (CCTC)31239457583945769Non coding
71. (TAAA)31240114904011501Coding
72. (TCAA)31240177584017769Coding
73. (ATTA)31240365334036544Non coding
74. (AATA)31240552794055290Coding
75. (TTTA)31241230894123100Non coding
76. (ATTT)31241752044175215Coding
77. (ATTT)31241877044187715Coding
78. (TGAG)31242476384247649Non coding
79. (TTTA)31243414754341486Non coding
80. (CCCT)31244082704408281Non coding
81. (TAAA)31244096824409693Non coding
82. (AACC)31244160244416035Coding
83. (ATGA)31244236764423687Coding
84. (CCAG)31244907394490750Coding
85. (TTTA)31246506854650696Non coding
86. (AAAC)31246745804674591Coding
87. (ATTA)31246793704679381Non coding
88. (TCAA)31246930764693087Coding
89. (AAAT)31247281574728168Coding
90. (ATTG)31247852994785310Coding
91. (CCAA)31248522554852266Coding
92. (TTTG)31249538594953870Coding
93. (CCAA)31250258535025864Coding
94. (ACTT)31250507505050761Coding
95. (TATT)31251479445147955Coding-Non coding
96. (TCAT)31251995105199521Coding
97. (TGCT)31253114625311473Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.