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Organism:
Crinalium epipsammum PCC 9333
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(NC_019753 , 5315555 bp)
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Show Primer
Download
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Compound
:
0
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Perfect Compound
:
0
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Overlapping Compound
:
0
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Perfect
:
274
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Density of SSR
:
1SSR/
19.4
kb
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Average length of SSR
:
12.88
bp
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Coding
:
215
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Non-Coding
:
57
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Coding and Non-Coding
:
2
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Perfect SSRs
| S. No. | MOTIF | LENGTH | START | END | REGION |
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1.
| (TTTG)3 | 12 | 22472 | 22483 | Coding |
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2.
| (AATT)3 | 12 | 43931 | 43942 | Coding |
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3.
| (CATA)3 | 12 | 206025 | 206036 | Non coding |
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4.
| (CAAA)3 | 12 | 357669 | 357680 | Non coding |
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5.
| (AACA)3 | 12 | 425984 | 425995 | Coding |
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6.
| (CAAT)3 | 12 | 498367 | 498378 | Coding |
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7.
| (GTTG)3 | 12 | 539333 | 539344 | Coding |
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8.
| (AATA)3 | 12 | 565493 | 565504 | Non coding |
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9.
| (CAAA)3 | 12 | 580712 | 580723 | Coding |
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10.
| (TATT)3 | 12 | 899351 | 899362 | Coding |
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11.
| (TTGC)3 | 12 | 944747 | 944758 | Coding |
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12.
| (AGTA)3 | 12 | 1165630 | 1165641 | Non coding |
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13.
| (TTTG)3 | 12 | 1279619 | 1279630 | Coding |
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14.
| (AACT)3 | 12 | 1379077 | 1379088 | Coding |
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15.
| (TTTG)3 | 12 | 1391831 | 1391842 | Coding |
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16.
| (GGAG)3 | 12 | 1571828 | 1571839 | Non coding |
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17.
| (TTAT)3 | 12 | 1572294 | 1572305 | Coding |
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18.
| (TGAC)3 | 12 | 1614875 | 1614886 | Coding |
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19.
| (TTAT)3 | 12 | 1630746 | 1630757 | Non coding |
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20.
| (ATTT)3 | 12 | 1847614 | 1847625 | Coding |
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21.
| (CAAA)3 | 12 | 1852563 | 1852574 | Coding |
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22.
| (TGCT)3 | 12 | 1878671 | 1878682 | Coding |
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23.
| (AATA)3 | 12 | 1943597 | 1943608 | Non coding |
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24.
| (TTCT)3 | 12 | 1945333 | 1945344 | Coding |
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25.
| (AAAG)3 | 12 | 1956514 | 1956525 | Coding |
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26.
| (GAGT)3 | 12 | 2018761 | 2018772 | Non coding |
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27.
| (CAAG)3 | 12 | 2041715 | 2041726 | Coding |
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28.
| (CCAA)3 | 12 | 2117443 | 2117454 | Coding |
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29.
| (ATCC)3 | 12 | 2156132 | 2156143 | Coding |
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30.
| (ATGG)3 | 12 | 2204782 | 2204793 | Coding |
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31.
| (ACTT)3 | 12 | 2222743 | 2222754 | Coding |
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32.
| (AACC)3 | 12 | 2238582 | 2238593 | Coding |
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33.
| (GTCG)3 | 12 | 2256441 | 2256452 | Coding |
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34.
| (ATTT)3 | 12 | 2278398 | 2278409 | Coding |
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35.
| (CATT)3 | 12 | 2467628 | 2467639 | Coding |
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36.
| (CTGA)3 | 12 | 2498181 | 2498192 | Coding |
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37.
| (GTTG)3 | 12 | 2539019 | 2539030 | Coding |
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38.
| (AATT)3 | 12 | 2548518 | 2548529 | Coding |
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39.
| (TATC)3 | 12 | 2555897 | 2555908 | Non coding |
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40.
| (TGAA)3 | 12 | 2581536 | 2581547 | Coding |
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41.
| (ATAA)3 | 12 | 2676601 | 2676612 | Non coding |
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42.
| (AAAT)3 | 12 | 2702687 | 2702698 | Coding |
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43.
| (GCTG)3 | 12 | 2729139 | 2729150 | Coding |
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44.
| (ACCA)3 | 12 | 2741927 | 2741938 | Coding |
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45.
| (ATCC)3 | 12 | 2763088 | 2763099 | Coding |
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46.
| (GGAG)7 | 28 | 2763601 | 2763628 | Non coding |
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47.
| (AAGT)3 | 12 | 2795683 | 2795694 | Coding |
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48.
| (TAAA)3 | 12 | 2821100 | 2821111 | Non coding |
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49.
| (TTTG)3 | 12 | 2883225 | 2883236 | Non coding |
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50.
| (ATTT)3 | 12 | 2888112 | 2888123 | Non coding |
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51.
| (TAAA)3 | 12 | 2938160 | 2938171 | Non coding |
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52.
| (AGTT)3 | 12 | 3018271 | 3018282 | Coding |
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53.
| (TTTA)3 | 12 | 3144979 | 3144990 | Non coding |
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54.
| (TTAT)3 | 12 | 3158327 | 3158338 | Coding |
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55.
| (TTGC)3 | 12 | 3202068 | 3202079 | Coding |
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56.
| (CAAC)3 | 12 | 3211634 | 3211645 | Coding |
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57.
| (AATT)3 | 12 | 3245512 | 3245523 | Coding |
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58.
| (TGGC)3 | 12 | 3298667 | 3298678 | Coding |
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59.
| (CCTG)3 | 12 | 3577892 | 3577903 | Coding |
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60.
| (CCTG)3 | 12 | 3578087 | 3578098 | Coding |
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61.
| (CCTG)3 | 12 | 3578657 | 3578668 | Coding |
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62.
| (CCTG)3 | 12 | 3578852 | 3578863 | Coding |
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63.
| (TTTG)3 | 12 | 3598933 | 3598944 | Coding |
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64.
| (GTTG)3 | 12 | 3613682 | 3613693 | Coding |
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65.
| (ACAT)3 | 12 | 3693362 | 3693373 | Coding |
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66.
| (AAAC)3 | 12 | 3747663 | 3747674 | Coding |
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67.
| (TCAA)3 | 12 | 3767729 | 3767740 | Non coding |
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68.
| (ATCC)3 | 12 | 3901041 | 3901052 | Coding |
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69.
| (AGTA)3 | 12 | 3927937 | 3927948 | Non coding |
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70.
| (CCTC)3 | 12 | 3945758 | 3945769 | Non coding |
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71.
| (TAAA)3 | 12 | 4011490 | 4011501 | Coding |
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72.
| (TCAA)3 | 12 | 4017758 | 4017769 | Coding |
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73.
| (ATTA)3 | 12 | 4036533 | 4036544 | Non coding |
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74.
| (AATA)3 | 12 | 4055279 | 4055290 | Coding |
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75.
| (TTTA)3 | 12 | 4123089 | 4123100 | Non coding |
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76.
| (ATTT)3 | 12 | 4175204 | 4175215 | Coding |
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77.
| (ATTT)3 | 12 | 4187704 | 4187715 | Coding |
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78.
| (TGAG)3 | 12 | 4247638 | 4247649 | Non coding |
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79.
| (TTTA)3 | 12 | 4341475 | 4341486 | Non coding |
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80.
| (CCCT)3 | 12 | 4408270 | 4408281 | Non coding |
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81.
| (TAAA)3 | 12 | 4409682 | 4409693 | Non coding |
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82.
| (AACC)3 | 12 | 4416024 | 4416035 | Coding |
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83.
| (ATGA)3 | 12 | 4423676 | 4423687 | Coding |
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84.
| (CCAG)3 | 12 | 4490739 | 4490750 | Coding |
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85.
| (TTTA)3 | 12 | 4650685 | 4650696 | Non coding |
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86.
| (AAAC)3 | 12 | 4674580 | 4674591 | Coding |
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87.
| (ATTA)3 | 12 | 4679370 | 4679381 | Non coding |
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88.
| (TCAA)3 | 12 | 4693076 | 4693087 | Coding |
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89.
| (AAAT)3 | 12 | 4728157 | 4728168 | Coding |
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90.
| (ATTG)3 | 12 | 4785299 | 4785310 | Coding |
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91.
| (CCAA)3 | 12 | 4852255 | 4852266 | Coding |
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92.
| (TTTG)3 | 12 | 4953859 | 4953870 | Coding |
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93.
| (CCAA)3 | 12 | 5025853 | 5025864 | Coding |
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94.
| (ACTT)3 | 12 | 5050750 | 5050761 | Coding |
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95.
| (TATT)3 | 12 | 5147944 | 5147955 | Coding-Non coding |
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96.
| (TCAT)3 | 12 | 5199510 | 5199521 | Coding |
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97.
| (TGCT)3 | 12 | 5311462 | 5311473 | Coding |
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Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71
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