CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Cyanobacterium aponinum PCC 10605 (NC_019776 4114100 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 281     Density of SSR      : 1SSR/ 14.64 kb   Average length of SSR  : 12.41 bp
Coding      : 207     Non-Coding           : 62   Coding and Non-Coding : 12
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 8 6 140 113 8 6 281
IMPERFECT 7 160 1966 1783 194 168 4278
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (AATT)31224182429Coding
2. (GTT)4121859018601Coding
3. (TCT)4125391253923Coding
4. (GCG)4126512065131Coding
5. (ATTT)3129889298903Coding
6. (TTTA)3129927999290Non coding
7. (AAT)412101477101488Coding
8. (CT)612111337111348Coding
9. (ACA)412119987119998Coding
10. (TATT)312140411140422Coding
11. (ATAA)416172311172326Non coding
12. (TAA)412174359174370Non coding
13. (AATT)312184354184365Coding
14. (ATG)412189296189307Coding
15. (TGG)412233582233593Coding
16. (AATC)312245315245326Coding
17. (TAAA)312263863263874Coding-Non coding
18. (TC)612270693270704Coding
19. (CCTTA)315296124296138Non coding
20. (CTC)412297118297129Non coding
21. (AATT)312299921299932Coding
22. (TTTAT)315312096312110Non coding
23. (CAAT)312354333354344Coding
24. (TAT)412357275357286Coding-Non coding
25. (TTTC)312380194380205Coding
26. (ATT)412392092392103Coding
27. (AGG)412410093410104Coding
28. (AAT)412424509424520Coding
29. (AATA)312434331434342Coding-Non coding
30. (TTC)412440651440662Coding
31. (TAT)412441214441225Coding
32. (AATA)312449808449819Coding
33. (TTA)412460608460619Coding
34. (TAAA)312461287461298Non coding
35. (GTTT)312478619478630Coding
36. (TGGG)312500793500804Coding
37. (ATA)412503584503595Coding
38. (AAAT)312504301504312Coding
39. (TAAT)312519669519680Non coding
40. (ATT)412523074523085Non coding
41. (TTA)412525567525578Non coding
42. (TCA)721534859534879Coding
43. (TTA)412537877537888Coding
44. (TATT)312548237548248Coding
45. (TAT)412562005562016Coding-Non coding
46. (AGAT)312576346576357Coding
47. (ATTA)312612024612035Non coding
48. (TAAA)312622820622831Coding
49. (CTC)412627406627417Coding
50. (ATTA)312648158648169Non coding
51. (CAC)412648919648930Coding
52. (AATA)312723546723557Coding
53. (ATG)412754990755001Coding
54. (TGA)412757571757582Coding
55. (CAA)412764361764372Coding
56. (TTA)412797853797864Coding
57. (TAAAG)315803626803640Coding
58. (ATC)412810071810082Coding
59. (CCG)412812855812866Coding
60. (CTT)412824404824415Coding
61. (TAA)412846546846557Coding
62. (TATTT)315868808868822Coding
63. (ATG)412922223922234Coding
64. (AACA)312961727961738Coding
65. (TAAA)31210089361008947Non coding
66. (GAA)41210130381013049Coding
67. (CTTT)31210219231021934Coding
68. (TTA)41210385821038593Coding
69. (TTAT)31210465631046574Non coding
70. (GGT)41210812611081272Coding
71. (CCA)41210853331085344Coding
72. (GAA)51511203481120362Coding
73. (AAAT)31211334361133447Coding-Non coding
74. (CCAA)31211357241135735Coding
75. (AAT)41211437491143760Non coding
76. (TAA)41211642291164240Coding
77. (ATA)41211737471173758Non coding
78. (GATT)31211768601176871Non coding
79. (TAT)41212005381200549Coding
80. (CAAA)31212030841203095Coding
81. (A)121212346771234688Non coding
82. (AAT)41212384941238505Coding
83. (GGT)51512486711248685Coding
84. (T)121212521691252180Coding
85. (AAAT)31212567831256794Non coding
86. (TAAT)31212705721270583Coding
87. (ACAA)31213126031312614Coding
88. (AAAT)31213621671362178Coding
89. (TTTG)31213964161396427Coding
90. (GCG)41214061131406124Coding
91. (ATAA)31214105201410531Coding
92. (ATT)41214124911412502Coding
93. (ATTT)31214222401422251Coding
94. (TTAT)31214457911445802Coding
95. (ATT)41214507201450731Coding
96. (TAAA)31214556531455664Coding
97. (AAT)41214643821464393Coding
98. (ATTA)31214862451486256Non coding
99. (T)121214928931492904Coding
100. (CTC)51515371071537121Coding
101. (TGTT)31215981821598193Coding
102. (TAT)41216065981606609Coding-Non coding
103. (AATT)31216468621646873Coding-Non coding
104. (AAG)41216654041665415Coding
105. (GAG)41216821561682167Coding
106. (GTTT)31217077071707718Coding
107. (AT)61217100751710086Coding
108. (AAGA)31217295861729597Coding
109. (ATT)41217517051751716Coding
110. (TAG)41217746941774705Coding
111. (ATCT)31217822221782233Coding
112. (CAAT)31218266371826648Coding
113. (TCTA)31218346651834676Coding
114. (AATATA)31818518681851885Coding
115. (GCG)41218572441857255Coding
116. (T)131318651091865121Coding-Non coding
117. (TGA)41218926651892676Coding
118. (TAAT)31218989191898930Non coding
119. (GAAA)31219062551906266Coding
120. (TCA)41219379221937933Coding
121. (AGAA)31219394971939508Coding
122. (ATTT)31219557641955775Coding
123. (TCTTAC)42419599561959979Non coding
124. (GGAA)31219757231975734Coding
125. (CTT)41220131072013118Coding
126. (TTC)41220554782055489Coding
127. (TATT)31220646002064611Coding
128. (TTTA)31220757762075787Coding
129. (ATTT)31220809952081006Non coding
130. (ATAA)31220812022081213Non coding
131. (AATT)31221618582161869Non coding
132. (AAG)41221784022178413Coding
133. (GAA)41221898122189823Coding
134. (TAAA)31221907412190752Coding-Non coding
135. (TTCT)31221925892192600Coding
136. (AAG)41222127412212752Coding
137. (TTC)41222267932226804Non coding
138. (CAT)41222379752237986Coding
139. (AATT)31222401682240179Coding
140. (T)121222427212242732Coding
141. (TCC)41222463472246358Coding
142. (GCC)41222534992253510Coding
143. (TAAT)31222904482290459Non coding
144. (TAA)41222907852290796Non coding
145. (TGT)41223021262302137Non coding
146. (TTA)41223033582303369Non coding
147. (TTTG)31223142962314307Non coding
148. (GATT)31223217372321748Coding
149. (CGA)41223244972324508Coding
150. (GCC)41223297312329742Coding
151. (AGA)41223719382371949Coding
152. (ATT)41223777692377780Coding
153. (CAGT)31223946012394612Coding
154. (AAT)41224113822411393Coding
155. (TTAT)31224122372412248Non coding
156. (TCT)41224269062426917Coding
157. (GAA)41224311442431155Coding
158. (AAAC)31224376562437667Coding
159. (TATT)31224481512448162Coding
160. (AAAT)31224565272456538Non coding
161. (TTAT)31224804462480457Non coding
162. (CTT)41225066702506681Coding
163. (AAT)41225071912507202Coding-Non coding
164. (TTAT)31225295672529578Non coding
165. (AAT)41225583382558349Coding
166. (TTAT)31225666742566685Coding
167. (CGG)41225688912568902Coding
168. (TTTC)31225946602594671Coding
169. (ATAA)31226147472614758Non coding
170. (ATTT)31226240022624013Coding
171. (CAAT)31226673132667324Coding
172. (CGT)41226750742675085Coding
173. (AAT)41226770262677037Coding
174. (TAAA)31226903732690384Coding
175. (GAT)41227340402734051Coding
176. (TAAA)31227369232736934Coding
177. (TTG)41227398372739848Coding
178. (ATT)51527650382765052Non coding
179. (TAA)41228026502802661Coding
180. (CTA)41228317972831808Coding
181. (CTT)41228351632835174Coding
182. (TTTGA)31528423842842398Coding
183. (CAC)41228439782843989Coding
184. (CGG)41228892852889296Coding
185. (ATTA)52028911832891202Non coding
186. (A)121228990482899059Non coding
187. (TAAA)31229131212913132Coding
188. (TTTC)31229216012921612Non coding
189. (ACC)41229235382923549Coding
190. (TAAA)31229247802924791Non coding
191. (TCT)41229288102928821Coding
192. (AG)61229374602937471Coding
193. (GAG)41229444052944416Coding
194. (CTT)41229509632950974Coding
195. (TCT)41229692212969232Coding
196. (ATAAAA)31830198953019912Coding
197. (GCG)41230330423033053Coding
198. (TTTA)31230467203046731Coding-Non coding
199. (AGAT)31230545853054596Non coding
200. (TTG)41230639443063955Coding
201. (ATA)41230791003079111Coding
202. (ATT)51530927763092790Non coding
203. (TTCT)31230933133093324Non coding
204. (AATT)31231044433104454Coding
205. (TCA)41231322553132266Coding
206. (CTT)41231365823136593Coding
207. (TCA)51531368783136892Coding
208. (TTC)41231542643154275Coding
209. (ATTAA)31531913963191410Non coding
210. (AAAT)31232059513205962Coding
211. (GAC)41232137563213767Coding
212. (AAAT)31232162613216272Non coding
213. (AAAT)31232163893216400Non coding
214. (TTA)41232171453217156Coding
215. (TTC)41232236823223693Coding
216. (TTTC)31232636623263673Non coding
217. (ATC)41232873303287341Coding
218. (TTA)41233106373310648Coding
219. (TTA)41233185393318550Coding
220. (AAT)41233195293319540Non coding
221. (AAG)41233389363338947Coding
222. (AT)81633457963345811Coding
223. (ATA)41233487003348711Coding
224. (TTTA)31233550003355011Non coding
225. (AATA)31233750153375026Coding
226. (ATCT)31233811473381158Coding
227. (AGTT)31233870563387067Coding
228. (GGC)51534079953408009Coding
229. (AATA)31234251303425141Coding
230. (GGC)41234715043471515Coding
231. (TAAT)31234721883472199Coding-Non coding
232. (TTAT)31234871623487173Non coding
233. (TTC)41235065693506580Coding
234. (ATC)41235066353506646Coding
235. (AAAT)31235239063523917Coding
236. (AATT)31235308633530874Non coding
237. (A)121235327443532755Non coding
238. (TAT)41235369773536988Coding
239. (TTG)41235470123547023Coding
240. (CAT)41235529363552947Coding
241. (TC)61235543673554378Coding
242. (ACGG)31236001503600161Coding
243. (AAT)41236052833605294Coding
244. (CTCTCC)31836077553607772Non coding
245. (TTC)41236145743614585Coding
246. (TGA)41236178423617853Coding
247. (CGGAAA)31836228103622827Coding
248. (TCC)41236356753635686Non coding
249. (ATT)41236429383642949Coding
250. (AGA)41236527793652790Coding
251. (TTC)41236750513675062Coding
252. (AAT)41236772573677268Coding
253. (TGA)41236886983688709Coding
254. (TCAA)31237006763700687Coding
255. (TTAA)31237348803734891Non coding
256. (ACG)41237364653736476Coding
257. (TTA)41237396023739613Coding
258. (CTT)41237455523745563Coding
259. (AAAC)31237572483757259Coding
260. (TATT)31237809293780940Non coding
261. (TCC)41238019103801921Coding
262. (CTT)41238342143834225Coding
263. (T)121238478293847840Non coding
264. (AATTG)31538673573867371Non coding
265. (CAAC)31238781913878202Coding
266. (TAA)41238804163880427Coding
267. (ATTG)31239278043927815Coding
268. (TTC)41239390843939095Coding
269. (ATGATC)31839561283956145Coding
270. (AAG)51539626433962657Coding
271. (AAATA)31539670643967078Coding
272. (ATTA)31239913643991375Non coding
273. (AAAT)31239980253998036Non coding
274. (TATT)31240293974029408Coding
275. (AATT)31240321324032143Coding
276. (GAT)41240442184044229Coding
277. (AATC)31240493854049396Coding
278. (TTC)41240601624060173Coding
279. (TAT)41240684224068433Coding
280. (ATC)41240920164092027Coding
281. (CACT)31241094714109482Non coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.