CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Cyanobacterium aponinum PCC 10605 (NC_019776 4114100 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 281     Density of SSR      : 1SSR/ 14.64 kb   Average length of SSR  : 12.41 bp
Coding      : 207     Non-Coding           : 62   Coding and Non-Coding : 12
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 8 6 140 113 8 6 281
IMPERFECT 7 160 1966 1783 194 168 4278
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (GTT)4121859018601Coding
2. (TCT)4125391253923Coding
3. (GCG)4126512065131Coding
4. (AAT)412101477101488Coding
5. (ACA)412119987119998Coding
6. (TAA)412174359174370Non coding
7. (ATG)412189296189307Coding
8. (TGG)412233582233593Coding
9. (CTC)412297118297129Non coding
10. (TAT)412357275357286Coding-Non coding
11. (ATT)412392092392103Coding
12. (AGG)412410093410104Coding
13. (AAT)412424509424520Coding
14. (TTC)412440651440662Coding
15. (TAT)412441214441225Coding
16. (TTA)412460608460619Coding
17. (ATA)412503584503595Coding
18. (ATT)412523074523085Non coding
19. (TTA)412525567525578Non coding
20. (TCA)721534859534879Coding
21. (TTA)412537877537888Coding
22. (TAT)412562005562016Coding-Non coding
23. (CTC)412627406627417Coding
24. (CAC)412648919648930Coding
25. (ATG)412754990755001Coding
26. (TGA)412757571757582Coding
27. (CAA)412764361764372Coding
28. (TTA)412797853797864Coding
29. (ATC)412810071810082Coding
30. (CCG)412812855812866Coding
31. (CTT)412824404824415Coding
32. (TAA)412846546846557Coding
33. (ATG)412922223922234Coding
34. (GAA)41210130381013049Coding
35. (TTA)41210385821038593Coding
36. (GGT)41210812611081272Coding
37. (CCA)41210853331085344Coding
38. (GAA)51511203481120362Coding
39. (AAT)41211437491143760Non coding
40. (TAA)41211642291164240Coding
41. (ATA)41211737471173758Non coding
42. (TAT)41212005381200549Coding
43. (AAT)41212384941238505Coding
44. (GGT)51512486711248685Coding
45. (GCG)41214061131406124Coding
46. (ATT)41214124911412502Coding
47. (ATT)41214507201450731Coding
48. (AAT)41214643821464393Coding
49. (CTC)51515371071537121Coding
50. (TAT)41216065981606609Coding-Non coding
51. (AAG)41216654041665415Coding
52. (GAG)41216821561682167Coding
53. (ATT)41217517051751716Coding
54. (TAG)41217746941774705Coding
55. (GCG)41218572441857255Coding
56. (TGA)41218926651892676Coding
57. (TCA)41219379221937933Coding
58. (CTT)41220131072013118Coding
59. (TTC)41220554782055489Coding
60. (AAG)41221784022178413Coding
61. (GAA)41221898122189823Coding
62. (AAG)41222127412212752Coding
63. (TTC)41222267932226804Non coding
64. (CAT)41222379752237986Coding
65. (TCC)41222463472246358Coding
66. (GCC)41222534992253510Coding
67. (TAA)41222907852290796Non coding
68. (TGT)41223021262302137Non coding
69. (TTA)41223033582303369Non coding
70. (CGA)41223244972324508Coding
71. (GCC)41223297312329742Coding
72. (AGA)41223719382371949Coding
73. (ATT)41223777692377780Coding
74. (AAT)41224113822411393Coding
75. (TCT)41224269062426917Coding
76. (GAA)41224311442431155Coding
77. (CTT)41225066702506681Coding
78. (AAT)41225071912507202Coding-Non coding
79. (AAT)41225583382558349Coding
80. (CGG)41225688912568902Coding
81. (CGT)41226750742675085Coding
82. (AAT)41226770262677037Coding
83. (GAT)41227340402734051Coding
84. (TTG)41227398372739848Coding
85. (ATT)51527650382765052Non coding
86. (TAA)41228026502802661Coding
87. (CTA)41228317972831808Coding
88. (CTT)41228351632835174Coding
89. (CAC)41228439782843989Coding
90. (CGG)41228892852889296Coding
91. (ACC)41229235382923549Coding
92. (TCT)41229288102928821Coding
93. (GAG)41229444052944416Coding
94. (CTT)41229509632950974Coding
95. (TCT)41229692212969232Coding
96. (GCG)41230330423033053Coding
97. (TTG)41230639443063955Coding
98. (ATA)41230791003079111Coding
99. (ATT)51530927763092790Non coding
100. (TCA)41231322553132266Coding
101. (CTT)41231365823136593Coding
102. (TCA)51531368783136892Coding
103. (TTC)41231542643154275Coding
104. (GAC)41232137563213767Coding
105. (TTA)41232171453217156Coding
106. (TTC)41232236823223693Coding
107. (ATC)41232873303287341Coding
108. (TTA)41233106373310648Coding
109. (TTA)41233185393318550Coding
110. (AAT)41233195293319540Non coding
111. (AAG)41233389363338947Coding
112. (ATA)41233487003348711Coding
113. (GGC)51534079953408009Coding
114. (GGC)41234715043471515Coding
115. (TTC)41235065693506580Coding
116. (ATC)41235066353506646Coding
117. (TAT)41235369773536988Coding
118. (TTG)41235470123547023Coding
119. (CAT)41235529363552947Coding
120. (AAT)41236052833605294Coding
121. (TTC)41236145743614585Coding
122. (TGA)41236178423617853Coding
123. (TCC)41236356753635686Non coding
124. (ATT)41236429383642949Coding
125. (AGA)41236527793652790Coding
126. (TTC)41236750513675062Coding
127. (AAT)41236772573677268Coding
128. (TGA)41236886983688709Coding
129. (ACG)41237364653736476Coding
130. (TTA)41237396023739613Coding
131. (CTT)41237455523745563Coding
132. (TCC)41238019103801921Coding
133. (CTT)41238342143834225Coding
134. (TAA)41238804163880427Coding
135. (TTC)41239390843939095Coding
136. (AAG)51539626433962657Coding
137. (GAT)41240442184044229Coding
138. (TTC)41240601624060173Coding
139. (TAT)41240684224068433Coding
140. (ATC)41240920164092027Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.