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Organism:
Cyanobacterium aponinum PCC 10605
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(NC_019776 , 4114100 bp)
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Download
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Compound
:
0
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Perfect Compound
:
0
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Overlapping Compound
:
0
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Perfect
:
281
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Density of SSR
:
1SSR/
14.64
kb
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Average length of SSR
:
12.41
bp
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Coding
:
207
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Non-Coding
:
62
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Coding and Non-Coding
:
12
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Perfect SSRs
S. No. | MOTIF | LENGTH | START | END | REGION |
1.
| (AATT)3 | 12 | 2418 | 2429 | Coding |
2.
| (ATTT)3 | 12 | 98892 | 98903 | Coding |
3.
| (TTTA)3 | 12 | 99279 | 99290 | Non coding |
4.
| (TATT)3 | 12 | 140411 | 140422 | Coding |
5.
| (ATAA)4 | 16 | 172311 | 172326 | Non coding |
6.
| (AATT)3 | 12 | 184354 | 184365 | Coding |
7.
| (AATC)3 | 12 | 245315 | 245326 | Coding |
8.
| (TAAA)3 | 12 | 263863 | 263874 | Coding-Non coding |
9.
| (AATT)3 | 12 | 299921 | 299932 | Coding |
10.
| (CAAT)3 | 12 | 354333 | 354344 | Coding |
11.
| (TTTC)3 | 12 | 380194 | 380205 | Coding |
12.
| (AATA)3 | 12 | 434331 | 434342 | Coding-Non coding |
13.
| (AATA)3 | 12 | 449808 | 449819 | Coding |
14.
| (TAAA)3 | 12 | 461287 | 461298 | Non coding |
15.
| (GTTT)3 | 12 | 478619 | 478630 | Coding |
16.
| (TGGG)3 | 12 | 500793 | 500804 | Coding |
17.
| (AAAT)3 | 12 | 504301 | 504312 | Coding |
18.
| (TAAT)3 | 12 | 519669 | 519680 | Non coding |
19.
| (TATT)3 | 12 | 548237 | 548248 | Coding |
20.
| (AGAT)3 | 12 | 576346 | 576357 | Coding |
21.
| (ATTA)3 | 12 | 612024 | 612035 | Non coding |
22.
| (TAAA)3 | 12 | 622820 | 622831 | Coding |
23.
| (ATTA)3 | 12 | 648158 | 648169 | Non coding |
24.
| (AATA)3 | 12 | 723546 | 723557 | Coding |
25.
| (AACA)3 | 12 | 961727 | 961738 | Coding |
26.
| (TAAA)3 | 12 | 1008936 | 1008947 | Non coding |
27.
| (CTTT)3 | 12 | 1021923 | 1021934 | Coding |
28.
| (TTAT)3 | 12 | 1046563 | 1046574 | Non coding |
29.
| (AAAT)3 | 12 | 1133436 | 1133447 | Coding-Non coding |
30.
| (CCAA)3 | 12 | 1135724 | 1135735 | Coding |
31.
| (GATT)3 | 12 | 1176860 | 1176871 | Non coding |
32.
| (CAAA)3 | 12 | 1203084 | 1203095 | Coding |
33.
| (AAAT)3 | 12 | 1256783 | 1256794 | Non coding |
34.
| (TAAT)3 | 12 | 1270572 | 1270583 | Coding |
35.
| (ACAA)3 | 12 | 1312603 | 1312614 | Coding |
36.
| (AAAT)3 | 12 | 1362167 | 1362178 | Coding |
37.
| (TTTG)3 | 12 | 1396416 | 1396427 | Coding |
38.
| (ATAA)3 | 12 | 1410520 | 1410531 | Coding |
39.
| (ATTT)3 | 12 | 1422240 | 1422251 | Coding |
40.
| (TTAT)3 | 12 | 1445791 | 1445802 | Coding |
41.
| (TAAA)3 | 12 | 1455653 | 1455664 | Coding |
42.
| (ATTA)3 | 12 | 1486245 | 1486256 | Non coding |
43.
| (TGTT)3 | 12 | 1598182 | 1598193 | Coding |
44.
| (AATT)3 | 12 | 1646862 | 1646873 | Coding-Non coding |
45.
| (GTTT)3 | 12 | 1707707 | 1707718 | Coding |
46.
| (AAGA)3 | 12 | 1729586 | 1729597 | Coding |
47.
| (ATCT)3 | 12 | 1782222 | 1782233 | Coding |
48.
| (CAAT)3 | 12 | 1826637 | 1826648 | Coding |
49.
| (TCTA)3 | 12 | 1834665 | 1834676 | Coding |
50.
| (TAAT)3 | 12 | 1898919 | 1898930 | Non coding |
51.
| (GAAA)3 | 12 | 1906255 | 1906266 | Coding |
52.
| (AGAA)3 | 12 | 1939497 | 1939508 | Coding |
53.
| (ATTT)3 | 12 | 1955764 | 1955775 | Coding |
54.
| (GGAA)3 | 12 | 1975723 | 1975734 | Coding |
55.
| (TATT)3 | 12 | 2064600 | 2064611 | Coding |
56.
| (TTTA)3 | 12 | 2075776 | 2075787 | Coding |
57.
| (ATTT)3 | 12 | 2080995 | 2081006 | Non coding |
58.
| (ATAA)3 | 12 | 2081202 | 2081213 | Non coding |
59.
| (AATT)3 | 12 | 2161858 | 2161869 | Non coding |
60.
| (TAAA)3 | 12 | 2190741 | 2190752 | Coding-Non coding |
61.
| (TTCT)3 | 12 | 2192589 | 2192600 | Coding |
62.
| (AATT)3 | 12 | 2240168 | 2240179 | Coding |
63.
| (TAAT)3 | 12 | 2290448 | 2290459 | Non coding |
64.
| (TTTG)3 | 12 | 2314296 | 2314307 | Non coding |
65.
| (GATT)3 | 12 | 2321737 | 2321748 | Coding |
66.
| (CAGT)3 | 12 | 2394601 | 2394612 | Coding |
67.
| (TTAT)3 | 12 | 2412237 | 2412248 | Non coding |
68.
| (AAAC)3 | 12 | 2437656 | 2437667 | Coding |
69.
| (TATT)3 | 12 | 2448151 | 2448162 | Coding |
70.
| (AAAT)3 | 12 | 2456527 | 2456538 | Non coding |
71.
| (TTAT)3 | 12 | 2480446 | 2480457 | Non coding |
72.
| (TTAT)3 | 12 | 2529567 | 2529578 | Non coding |
73.
| (TTAT)3 | 12 | 2566674 | 2566685 | Coding |
74.
| (TTTC)3 | 12 | 2594660 | 2594671 | Coding |
75.
| (ATAA)3 | 12 | 2614747 | 2614758 | Non coding |
76.
| (ATTT)3 | 12 | 2624002 | 2624013 | Coding |
77.
| (CAAT)3 | 12 | 2667313 | 2667324 | Coding |
78.
| (TAAA)3 | 12 | 2690373 | 2690384 | Coding |
79.
| (TAAA)3 | 12 | 2736923 | 2736934 | Coding |
80.
| (ATTA)5 | 20 | 2891183 | 2891202 | Non coding |
81.
| (TAAA)3 | 12 | 2913121 | 2913132 | Coding |
82.
| (TTTC)3 | 12 | 2921601 | 2921612 | Non coding |
83.
| (TAAA)3 | 12 | 2924780 | 2924791 | Non coding |
84.
| (TTTA)3 | 12 | 3046720 | 3046731 | Coding-Non coding |
85.
| (AGAT)3 | 12 | 3054585 | 3054596 | Non coding |
86.
| (TTCT)3 | 12 | 3093313 | 3093324 | Non coding |
87.
| (AATT)3 | 12 | 3104443 | 3104454 | Coding |
88.
| (AAAT)3 | 12 | 3205951 | 3205962 | Coding |
89.
| (AAAT)3 | 12 | 3216261 | 3216272 | Non coding |
90.
| (AAAT)3 | 12 | 3216389 | 3216400 | Non coding |
91.
| (TTTC)3 | 12 | 3263662 | 3263673 | Non coding |
92.
| (TTTA)3 | 12 | 3355000 | 3355011 | Non coding |
93.
| (AATA)3 | 12 | 3375015 | 3375026 | Coding |
94.
| (ATCT)3 | 12 | 3381147 | 3381158 | Coding |
95.
| (AGTT)3 | 12 | 3387056 | 3387067 | Coding |
96.
| (AATA)3 | 12 | 3425130 | 3425141 | Coding |
97.
| (TAAT)3 | 12 | 3472188 | 3472199 | Coding-Non coding |
98.
| (TTAT)3 | 12 | 3487162 | 3487173 | Non coding |
99.
| (AAAT)3 | 12 | 3523906 | 3523917 | Coding |
100.
| (AATT)3 | 12 | 3530863 | 3530874 | Non coding |
101.
| (ACGG)3 | 12 | 3600150 | 3600161 | Coding |
102.
| (TCAA)3 | 12 | 3700676 | 3700687 | Coding |
103.
| (TTAA)3 | 12 | 3734880 | 3734891 | Non coding |
104.
| (AAAC)3 | 12 | 3757248 | 3757259 | Coding |
105.
| (TATT)3 | 12 | 3780929 | 3780940 | Non coding |
106.
| (CAAC)3 | 12 | 3878191 | 3878202 | Coding |
107.
| (ATTG)3 | 12 | 3927804 | 3927815 | Coding |
108.
| (ATTA)3 | 12 | 3991364 | 3991375 | Non coding |
109.
| (AAAT)3 | 12 | 3998025 | 3998036 | Non coding |
110.
| (TATT)3 | 12 | 4029397 | 4029408 | Coding |
111.
| (AATT)3 | 12 | 4032132 | 4032143 | Coding |
112.
| (AATC)3 | 12 | 4049385 | 4049396 | Coding |
113.
| (CACT)3 | 12 | 4109471 | 4109482 | Non coding |
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Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71
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