CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
HOME ABOUT DATABASE ADVANCED SEARCH TUTORIAL STATISTICS CONTACT
       Organism: Cyanobacterium aponinum PCC 10605 (NC_019776 4114100 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 281     Density of SSR      : 1SSR/ 14.64 kb   Average length of SSR  : 12.41 bp
Coding      : 207     Non-Coding           : 62   Coding and Non-Coding : 12
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 8 6 140 113 8 6 281
IMPERFECT 7 160 1966 1783 194 168 4278
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (AATT)31224182429Coding
2. (ATTT)3129889298903Coding
3. (TTTA)3129927999290Non coding
4. (TATT)312140411140422Coding
5. (ATAA)416172311172326Non coding
6. (AATT)312184354184365Coding
7. (AATC)312245315245326Coding
8. (TAAA)312263863263874Coding-Non coding
9. (AATT)312299921299932Coding
10. (CAAT)312354333354344Coding
11. (TTTC)312380194380205Coding
12. (AATA)312434331434342Coding-Non coding
13. (AATA)312449808449819Coding
14. (TAAA)312461287461298Non coding
15. (GTTT)312478619478630Coding
16. (TGGG)312500793500804Coding
17. (AAAT)312504301504312Coding
18. (TAAT)312519669519680Non coding
19. (TATT)312548237548248Coding
20. (AGAT)312576346576357Coding
21. (ATTA)312612024612035Non coding
22. (TAAA)312622820622831Coding
23. (ATTA)312648158648169Non coding
24. (AATA)312723546723557Coding
25. (AACA)312961727961738Coding
26. (TAAA)31210089361008947Non coding
27. (CTTT)31210219231021934Coding
28. (TTAT)31210465631046574Non coding
29. (AAAT)31211334361133447Coding-Non coding
30. (CCAA)31211357241135735Coding
31. (GATT)31211768601176871Non coding
32. (CAAA)31212030841203095Coding
33. (AAAT)31212567831256794Non coding
34. (TAAT)31212705721270583Coding
35. (ACAA)31213126031312614Coding
36. (AAAT)31213621671362178Coding
37. (TTTG)31213964161396427Coding
38. (ATAA)31214105201410531Coding
39. (ATTT)31214222401422251Coding
40. (TTAT)31214457911445802Coding
41. (TAAA)31214556531455664Coding
42. (ATTA)31214862451486256Non coding
43. (TGTT)31215981821598193Coding
44. (AATT)31216468621646873Coding-Non coding
45. (GTTT)31217077071707718Coding
46. (AAGA)31217295861729597Coding
47. (ATCT)31217822221782233Coding
48. (CAAT)31218266371826648Coding
49. (TCTA)31218346651834676Coding
50. (TAAT)31218989191898930Non coding
51. (GAAA)31219062551906266Coding
52. (AGAA)31219394971939508Coding
53. (ATTT)31219557641955775Coding
54. (GGAA)31219757231975734Coding
55. (TATT)31220646002064611Coding
56. (TTTA)31220757762075787Coding
57. (ATTT)31220809952081006Non coding
58. (ATAA)31220812022081213Non coding
59. (AATT)31221618582161869Non coding
60. (TAAA)31221907412190752Coding-Non coding
61. (TTCT)31221925892192600Coding
62. (AATT)31222401682240179Coding
63. (TAAT)31222904482290459Non coding
64. (TTTG)31223142962314307Non coding
65. (GATT)31223217372321748Coding
66. (CAGT)31223946012394612Coding
67. (TTAT)31224122372412248Non coding
68. (AAAC)31224376562437667Coding
69. (TATT)31224481512448162Coding
70. (AAAT)31224565272456538Non coding
71. (TTAT)31224804462480457Non coding
72. (TTAT)31225295672529578Non coding
73. (TTAT)31225666742566685Coding
74. (TTTC)31225946602594671Coding
75. (ATAA)31226147472614758Non coding
76. (ATTT)31226240022624013Coding
77. (CAAT)31226673132667324Coding
78. (TAAA)31226903732690384Coding
79. (TAAA)31227369232736934Coding
80. (ATTA)52028911832891202Non coding
81. (TAAA)31229131212913132Coding
82. (TTTC)31229216012921612Non coding
83. (TAAA)31229247802924791Non coding
84. (TTTA)31230467203046731Coding-Non coding
85. (AGAT)31230545853054596Non coding
86. (TTCT)31230933133093324Non coding
87. (AATT)31231044433104454Coding
88. (AAAT)31232059513205962Coding
89. (AAAT)31232162613216272Non coding
90. (AAAT)31232163893216400Non coding
91. (TTTC)31232636623263673Non coding
92. (TTTA)31233550003355011Non coding
93. (AATA)31233750153375026Coding
94. (ATCT)31233811473381158Coding
95. (AGTT)31233870563387067Coding
96. (AATA)31234251303425141Coding
97. (TAAT)31234721883472199Coding-Non coding
98. (TTAT)31234871623487173Non coding
99. (AAAT)31235239063523917Coding
100. (AATT)31235308633530874Non coding
101. (ACGG)31236001503600161Coding
102. (TCAA)31237006763700687Coding
103. (TTAA)31237348803734891Non coding
104. (AAAC)31237572483757259Coding
105. (TATT)31237809293780940Non coding
106. (CAAC)31238781913878202Coding
107. (ATTG)31239278043927815Coding
108. (ATTA)31239913643991375Non coding
109. (AAAT)31239980253998036Non coding
110. (TATT)31240293974029408Coding
111. (AATT)31240321324032143Coding
112. (AATC)31240493854049396Coding
113. (CACT)31241094714109482Non coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.