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Organism:
Cyanobacterium aponinum PCC 10605
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(NC_019776 , 4114100 bp)
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Show Primer
Download
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Compound
:
0
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Perfect Compound
:
0
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Overlapping Compound
:
0
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Perfect
:
281
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Density of SSR
:
1SSR/
14.64
kb
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Average length of SSR
:
12.41
bp
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Coding
:
207
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Non-Coding
:
62
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Coding and Non-Coding
:
12
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Perfect SSRs
| S. No. | MOTIF | LENGTH | START | END | REGION |
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1.
| (AATT)3 | 12 | 2418 | 2429 | Coding |
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2.
| (ATTT)3 | 12 | 98892 | 98903 | Coding |
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3.
| (TTTA)3 | 12 | 99279 | 99290 | Non coding |
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4.
| (TATT)3 | 12 | 140411 | 140422 | Coding |
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5.
| (ATAA)4 | 16 | 172311 | 172326 | Non coding |
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6.
| (AATT)3 | 12 | 184354 | 184365 | Coding |
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7.
| (AATC)3 | 12 | 245315 | 245326 | Coding |
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8.
| (TAAA)3 | 12 | 263863 | 263874 | Coding-Non coding |
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9.
| (AATT)3 | 12 | 299921 | 299932 | Coding |
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10.
| (CAAT)3 | 12 | 354333 | 354344 | Coding |
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11.
| (TTTC)3 | 12 | 380194 | 380205 | Coding |
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12.
| (AATA)3 | 12 | 434331 | 434342 | Coding-Non coding |
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13.
| (AATA)3 | 12 | 449808 | 449819 | Coding |
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14.
| (TAAA)3 | 12 | 461287 | 461298 | Non coding |
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15.
| (GTTT)3 | 12 | 478619 | 478630 | Coding |
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16.
| (TGGG)3 | 12 | 500793 | 500804 | Coding |
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17.
| (AAAT)3 | 12 | 504301 | 504312 | Coding |
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18.
| (TAAT)3 | 12 | 519669 | 519680 | Non coding |
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19.
| (TATT)3 | 12 | 548237 | 548248 | Coding |
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20.
| (AGAT)3 | 12 | 576346 | 576357 | Coding |
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21.
| (ATTA)3 | 12 | 612024 | 612035 | Non coding |
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22.
| (TAAA)3 | 12 | 622820 | 622831 | Coding |
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23.
| (ATTA)3 | 12 | 648158 | 648169 | Non coding |
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24.
| (AATA)3 | 12 | 723546 | 723557 | Coding |
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25.
| (AACA)3 | 12 | 961727 | 961738 | Coding |
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26.
| (TAAA)3 | 12 | 1008936 | 1008947 | Non coding |
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27.
| (CTTT)3 | 12 | 1021923 | 1021934 | Coding |
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28.
| (TTAT)3 | 12 | 1046563 | 1046574 | Non coding |
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29.
| (AAAT)3 | 12 | 1133436 | 1133447 | Coding-Non coding |
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30.
| (CCAA)3 | 12 | 1135724 | 1135735 | Coding |
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31.
| (GATT)3 | 12 | 1176860 | 1176871 | Non coding |
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32.
| (CAAA)3 | 12 | 1203084 | 1203095 | Coding |
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33.
| (AAAT)3 | 12 | 1256783 | 1256794 | Non coding |
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34.
| (TAAT)3 | 12 | 1270572 | 1270583 | Coding |
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35.
| (ACAA)3 | 12 | 1312603 | 1312614 | Coding |
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36.
| (AAAT)3 | 12 | 1362167 | 1362178 | Coding |
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37.
| (TTTG)3 | 12 | 1396416 | 1396427 | Coding |
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38.
| (ATAA)3 | 12 | 1410520 | 1410531 | Coding |
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39.
| (ATTT)3 | 12 | 1422240 | 1422251 | Coding |
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40.
| (TTAT)3 | 12 | 1445791 | 1445802 | Coding |
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41.
| (TAAA)3 | 12 | 1455653 | 1455664 | Coding |
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42.
| (ATTA)3 | 12 | 1486245 | 1486256 | Non coding |
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43.
| (TGTT)3 | 12 | 1598182 | 1598193 | Coding |
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44.
| (AATT)3 | 12 | 1646862 | 1646873 | Coding-Non coding |
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45.
| (GTTT)3 | 12 | 1707707 | 1707718 | Coding |
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46.
| (AAGA)3 | 12 | 1729586 | 1729597 | Coding |
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47.
| (ATCT)3 | 12 | 1782222 | 1782233 | Coding |
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48.
| (CAAT)3 | 12 | 1826637 | 1826648 | Coding |
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49.
| (TCTA)3 | 12 | 1834665 | 1834676 | Coding |
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50.
| (TAAT)3 | 12 | 1898919 | 1898930 | Non coding |
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51.
| (GAAA)3 | 12 | 1906255 | 1906266 | Coding |
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52.
| (AGAA)3 | 12 | 1939497 | 1939508 | Coding |
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53.
| (ATTT)3 | 12 | 1955764 | 1955775 | Coding |
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54.
| (GGAA)3 | 12 | 1975723 | 1975734 | Coding |
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55.
| (TATT)3 | 12 | 2064600 | 2064611 | Coding |
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56.
| (TTTA)3 | 12 | 2075776 | 2075787 | Coding |
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57.
| (ATTT)3 | 12 | 2080995 | 2081006 | Non coding |
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58.
| (ATAA)3 | 12 | 2081202 | 2081213 | Non coding |
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59.
| (AATT)3 | 12 | 2161858 | 2161869 | Non coding |
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60.
| (TAAA)3 | 12 | 2190741 | 2190752 | Coding-Non coding |
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61.
| (TTCT)3 | 12 | 2192589 | 2192600 | Coding |
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62.
| (AATT)3 | 12 | 2240168 | 2240179 | Coding |
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63.
| (TAAT)3 | 12 | 2290448 | 2290459 | Non coding |
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64.
| (TTTG)3 | 12 | 2314296 | 2314307 | Non coding |
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65.
| (GATT)3 | 12 | 2321737 | 2321748 | Coding |
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66.
| (CAGT)3 | 12 | 2394601 | 2394612 | Coding |
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67.
| (TTAT)3 | 12 | 2412237 | 2412248 | Non coding |
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68.
| (AAAC)3 | 12 | 2437656 | 2437667 | Coding |
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69.
| (TATT)3 | 12 | 2448151 | 2448162 | Coding |
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70.
| (AAAT)3 | 12 | 2456527 | 2456538 | Non coding |
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71.
| (TTAT)3 | 12 | 2480446 | 2480457 | Non coding |
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72.
| (TTAT)3 | 12 | 2529567 | 2529578 | Non coding |
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73.
| (TTAT)3 | 12 | 2566674 | 2566685 | Coding |
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74.
| (TTTC)3 | 12 | 2594660 | 2594671 | Coding |
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75.
| (ATAA)3 | 12 | 2614747 | 2614758 | Non coding |
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76.
| (ATTT)3 | 12 | 2624002 | 2624013 | Coding |
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77.
| (CAAT)3 | 12 | 2667313 | 2667324 | Coding |
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78.
| (TAAA)3 | 12 | 2690373 | 2690384 | Coding |
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79.
| (TAAA)3 | 12 | 2736923 | 2736934 | Coding |
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80.
| (ATTA)5 | 20 | 2891183 | 2891202 | Non coding |
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81.
| (TAAA)3 | 12 | 2913121 | 2913132 | Coding |
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82.
| (TTTC)3 | 12 | 2921601 | 2921612 | Non coding |
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83.
| (TAAA)3 | 12 | 2924780 | 2924791 | Non coding |
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84.
| (TTTA)3 | 12 | 3046720 | 3046731 | Coding-Non coding |
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85.
| (AGAT)3 | 12 | 3054585 | 3054596 | Non coding |
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86.
| (TTCT)3 | 12 | 3093313 | 3093324 | Non coding |
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87.
| (AATT)3 | 12 | 3104443 | 3104454 | Coding |
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88.
| (AAAT)3 | 12 | 3205951 | 3205962 | Coding |
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89.
| (AAAT)3 | 12 | 3216261 | 3216272 | Non coding |
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90.
| (AAAT)3 | 12 | 3216389 | 3216400 | Non coding |
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91.
| (TTTC)3 | 12 | 3263662 | 3263673 | Non coding |
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92.
| (TTTA)3 | 12 | 3355000 | 3355011 | Non coding |
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93.
| (AATA)3 | 12 | 3375015 | 3375026 | Coding |
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94.
| (ATCT)3 | 12 | 3381147 | 3381158 | Coding |
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95.
| (AGTT)3 | 12 | 3387056 | 3387067 | Coding |
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96.
| (AATA)3 | 12 | 3425130 | 3425141 | Coding |
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97.
| (TAAT)3 | 12 | 3472188 | 3472199 | Coding-Non coding |
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98.
| (TTAT)3 | 12 | 3487162 | 3487173 | Non coding |
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99.
| (AAAT)3 | 12 | 3523906 | 3523917 | Coding |
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100.
| (AATT)3 | 12 | 3530863 | 3530874 | Non coding |
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101.
| (ACGG)3 | 12 | 3600150 | 3600161 | Coding |
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102.
| (TCAA)3 | 12 | 3700676 | 3700687 | Coding |
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103.
| (TTAA)3 | 12 | 3734880 | 3734891 | Non coding |
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104.
| (AAAC)3 | 12 | 3757248 | 3757259 | Coding |
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105.
| (TATT)3 | 12 | 3780929 | 3780940 | Non coding |
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106.
| (CAAC)3 | 12 | 3878191 | 3878202 | Coding |
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107.
| (ATTG)3 | 12 | 3927804 | 3927815 | Coding |
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108.
| (ATTA)3 | 12 | 3991364 | 3991375 | Non coding |
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109.
| (AAAT)3 | 12 | 3998025 | 3998036 | Non coding |
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110.
| (TATT)3 | 12 | 4029397 | 4029408 | Coding |
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111.
| (AATT)3 | 12 | 4032132 | 4032143 | Coding |
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112.
| (AATC)3 | 12 | 4049385 | 4049396 | Coding |
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113.
| (CACT)3 | 12 | 4109471 | 4109482 | Non coding |
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Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71
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