CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Cyanobacterium stanieri PCC 7202 (NC_019778 3163382 bp)                                                         Show Alignment       Show Primer       Download
     
          Density of SSR      : 1SSR/ 1.08 kb   Average length of SSR  : 12.35 bp
Coding      : 2273     Non-Coding           : 562   Coding and Non-Coding : 86
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 1 122 59 4 6 192
IMPERFECT 2 119 1461 1098 135 106 2921
Imperfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. AT1146454655Coding
2. CT1154645474Coding
3. TC112853228542Non coding
4. TA116194561955Non coding
5. TG116834068350Coding
6. AT12100267100278Non coding
7. CA12142099142110Coding
8. AT12203992204003Coding
9. AT11280148280158Non coding
10. AT11296184296194Coding
11. CT11303656303666Coding
12. AT11318803318813Coding
13. GA13334526334538Coding
14. AT11342326342336Coding-Non coding
15. TA13343592343604Non coding
16. TA11366087366097Non coding
17. AT12389119389130Coding
18. AT11396580396590Coding-Non coding
19. GT11416397416407Non coding
20. AT12424775424786Non coding
21. TA16434168434183Non coding
22. TA12462392462403Coding
23. AT11466091466101Coding
24. AT13489302489314Coding
25. AT14559752559765Coding
26. TA11570654570664Coding
27. AT11576407576417Coding
28. AT11600973600983Non coding
29. TA11625217625227Coding
30. AG12709568709579Non coding
31. AT11721748721758Coding
32. TA12742100742111Non coding
33. AT13762348762360Coding
34. CT12770114770125Coding
35. CA14825783825796Coding
36. AT12841424841435Coding
37. CT11944280944290Non coding
38. AT11948901948911Non coding
39. TA12952865952876Coding
40. AT11972258972268Coding-Non coding
41. AT11976478976488Coding-Non coding
42. AT11980522980532Coding
43. TA11986520986530Non coding
44. TA12996392996403Coding
45. GT1110916091091619Coding
46. AT1111113831111393Non coding
47. TG1111192351119245Coding
48. AT1111269981127008Coding
49. GC1111280831128093Coding
50. TA1211445671144578Coding
51. AT1111504921150502Non coding
52. TA1111581101158120Non coding
53. TA1111673561167366Coding
54. AT1111740191174029Coding
55. TA1111810051181015Non coding
56. AT1112009001200910Non coding
57. CA1112667551266765Non coding
58. AC1212942651294276Coding
59. TA1212969781296989Coding
60. TA1113007641300774Coding
61. AG1113453191345329Non coding
62. AT1113640421364052Coding
63. AT1114130221413032Coding
64. AT1114712831471293Coding
65. AT1114871591487169Coding
66. TA1115092171509227Coding
67. AT1115706261570636Coding
68. TA1115861781586188Non coding
69. AT1315962171596229Coding
70. TC1115991071599117Coding
71. TC1116464081646418Coding
72. AG1117105711710581Coding
73. GA1217193231719334Coding
74. AT1217434211743432Coding
75. CT1117575671757577Coding
76. TA1118057371805747Non coding
77. TG1118122121812222Coding
78. TA1118294531829463Non coding
79. TA1118370181837028Coding
80. CT1118590521859062Coding
81. CA1218659821865993Coding
82. TA1219370431937054Non coding
83. TA1219370971937108Non coding
84. TC1119707931970803Coding
85. AG1120112812011291Coding
86. AT1120171632017173Non coding
87. TA1120173442017354Coding
88. TA1220205872020598Coding-Non coding
89. AT1120441332044143Coding-Non coding
90. AT1221376482137659Coding-Non coding
91. TG1221507202150731Coding
92. TC1321645752164587Coding
93. AT1121784372178447Non coding
94. TG1122381612238171Coding
95. TC1122416472241657Non coding
96. AT1122881912288201Coding
97. TC1222943352294346Coding
98. AT1122996362299646Coding
99. AT1323939572393969Coding
100. TA1324104072410419Coding
101. AT1125089752508985Coding
102. TC1125145732514583Coding
103. AT1125286672528677Coding
104. AT1125341432534153Non coding
105. TG1225384782538489Coding
106. TA1125870382587048Non coding
107. TA1125943072594317Coding
108. TA1126079032607913Non coding
109. TA1126563212656331Coding
110. TA1226643622664373Coding
111. AT1127244552724465Non coding
112. AT1127677822767792Non coding
113. TA1328443432844355Non coding
114. CA1129647352964745Coding
115. AT1129863322986342Non coding
116. TA1130163153016325Non coding
117. TA1230553133055324Non coding
118. CA1330711783071190Coding
119. TA1131324593132469Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.