CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Cyanobacterium stanieri PCC 7202 (NC_019778 3163382 bp)                                                         Show Alignment       Show Primer       Download
     
          Density of SSR      : 1SSR/ 1.08 kb   Average length of SSR  : 12.35 bp
Coding      : 2273     Non-Coding           : 562   Coding and Non-Coding : 86
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 1 122 59 4 6 192
IMPERFECT 2 119 1461 1098 135 106 2921
Imperfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. AAGGAA175119051206Coding
2. TGTAAA17106068106084Coding
3. AATATC18110501110518Coding
4. GAGAAA18159035159052Coding
5. ACCTGA102201677201778Coding
6. GAACCG24201795201818Coding
7. ATTAAG17208101208117Coding
8. TTTTAA19224145224163Non coding
9. GGTATT18224657224674Coding
10. AACCTA18259211259228Coding
11. AATCTA18281448281465Coding
12. TTTTCT18429192429209Coding
13. ATTAAT19448648448666Coding
14. ATTTTC18482793482810Coding
15. GCTTGG18535152535169Coding
16. CCCCTA18619641619658Coding
17. ACCCAA19644884644902Coding
18. AAATAG19703278703296Coding
19. AGTTCA18736273736290Coding
20. TTTTGA30737069737098Coding
21. TATAAA18750131750148Non coding
22. TTTTTA19778753778771Non coding
23. GAATAA18780904780921Coding
24. CACCCT18811829811846Coding
25. GGTAAA18824974824991Coding
26. TACCCC18843670843687Coding
27. TTTTAT19870319870337Coding-Non coding
28. AAAAAG19898781898799Non coding
29. CTAATT18917917917934Coding
30. CAAATA18933959933976Coding
31. AGAAAA1810078981007915Coding
32. TTTACT1710430601043076Coding-Non coding
33. TGGGCT1810502541050271Coding
34. CACGAC2410512441051267Coding
35. TTTGAT1711257601125776Coding
36. AAAATT1911381071138125Coding
37. TTATTG1811772751177292Non coding
38. AGAAAA1812179961218013Coding
39. TGGGGG1712405751240591Coding
40. GTTCTT1912604191260437Coding
41. AGAAAA1813031911303208Coding
42. TCCTCA1813221901322207Coding
43. TTTATA1913297561329774Non coding
44. AAAACC1914761051476123Coding
45. ACTGAA1815215741521591Coding
46. CCAATC1815233201523337Coding
47. GATATT1815531501553167Coding
48. ATGATC2415536761553699Coding
49. CATGAT2415537021553725Coding
50. AGTTTA1815873191587336Coding
51. GCCTAT1816110891611106Coding
52. AGAAAG1916174021617420Coding
53. GGGGCA1816365071636524Coding
54. GATAAA1816468071646824Coding
55. CTAATT1716533701653386Coding-Non coding
56. CTTTTT1816707771670794Coding
57. GATGGT1916724891672507Coding
58. ATTTTT1817047031704720Coding
59. TTTCTT2418295911829614Coding
60. TTATCT1918465971846615Coding
61. GGGCAA1818773691877386Coding
62. AGAGTA1718783281878344Coding
63. AATTAA1818849981885015Coding
64. AAGCCC1819143641914381Coding
65. ACAATA1719547671954783Coding
66. CATTGA1819732511973268Coding
67. GGTATT1819861621986179Coding
68. ATGCTT1820838992083916Coding
69. AATTTT1820854822085499Coding
70. AAAGGA1820917822091799Coding
71. AGCAAA1921349582134976Coding
72. CCGCTG1721352032135219Coding
73. TAACTT1821484822148499Coding
74. TTGTTC1921561272156145Coding
75. AAAAGA1821698462169863Coding
76. TAATGG1822501782250195Coding
77. TAAAAT1922635832263601Non coding
78. AAACCT1922793622279380Non coding
79. CCCGAA4222813662281407Coding
80. ATTAGT1922826322282650Coding
81. GTGGCT1823233592323376Coding
82. GCGGAG1823455692345586Coding
83. TGATAT1823492422349259Coding
84. ATTTAG1823671752367192Coding
85. TCTCCT1823925692392586Coding
86. ATTTTA1924003172400335Coding
87. TTTGAT1824344122434429Coding
88. TAAAAC1724833412483357Coding
89. ATTGAT1824833962483413Coding
90. GGATAG1825102402510257Coding
91. TTTTTA1925134282513446Coding
92. TTGGTT1925575932557611Coding
93. CATTAC2425648412564864Coding
94. AAGAAA1825861822586199Coding
95. AATTAA1826123192612336Coding
96. TTTTTG1726558412655857Coding
97. TAAAAA1827021852702202Coding
98. ATAGTA1827379382737955Non coding
99. AGAAAA1827932072793224Coding
100. TAAATT1828224082822425Coding
101. GATCAT2428308692830892Coding
102. TTTATT1929498812949899Coding
103. CCCAAA1930661693066187Coding
104. CTTTTT1830887313088748Coding-Non coding
105. ATTTTG1931298953129913Non coding
106. ATAAAA1831616903161707Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.