CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Cyanobacterium stanieri PCC 7202 (NC_019778 3163382 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 192     Density of SSR      : 1SSR/ 16.48 kb   Average length of SSR  : 12.31 bp
Coding      : 156     Non-Coding           : 28   Coding and Non-Coding : 8
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 1 122 59 4 6 192
IMPERFECT 2 119 1461 1098 135 106 2921
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (TAA)41279887999Coding
2. (ATT)4122911429125Non coding
3. (CCCT)3124319743208Non coding
4. (ACA)4124953149542Coding
5. (AAGA)3125099151002Coding
6. (CAGA)312156679156690Coding
7. (TGA)412159535159546Coding
8. (AATT)312166880166891Coding
9. (AGA)412192804192815Coding
10. (TGG)412239134239145Coding
11. (ATG)515270208270222Coding
12. (TGG)412277932277943Coding
13. (TTTA)312292249292260Non coding
14. (CAA)412295592295603Coding
15. (CGG)515297780297794Coding
16. (CAC)515351874351888Coding
17. (ACG)412355928355939Coding
18. (CGA)412356565356576Coding
19. (AAT)412363844363855Coding
20. (TGC)412381583381594Coding
21. (TGA)412394080394091Coding
22. (TTTTC)315394891394905Coding
23. (TGT)412396556396567Coding
24. (AACT)312400298400309Coding
25. (TAAT)312410438410449Coding
26. (GAT)412421898421909Coding
27. (TGG)412425490425501Coding
28. (AATT)312447772447783Non coding
29. (TTTA)312470405470416Non coding
30. (ATTT)312479638479649Coding
31. (AAG)412520559520570Coding
32. (CTT)412537199537210Coding
33. (ATTA)312554416554427Non coding
34. (ATG)412556575556586Coding
35. (TAT)412561606561617Coding
36. (TAAT)312570303570314Coding-Non coding
37. (TTAA)312609667609678Non coding
38. (CGA)412628600628611Coding
39. (CTAA)312646949646960Non coding
40. (GAG)412686456686467Coding
41. (ATC)412688525688536Coding
42. (GAAA)312703367703378Coding
43. (TCG)412735015735026Coding
44. (TTTTGA)318737069737086Coding
45. (GCC)412748513748524Coding
46. (AT)612762349762360Coding
47. (ATC)412768098768109Non coding
48. (CTT)412779812779823Coding
49. (TTAT)312804174804185Coding
50. (AATT)312806201806212Coding
51. (ACC)412806586806597Coding
52. (TATT)312809856809867Non coding
53. (TTTTA)315868531868545Non coding
54. (TTCT)312881448881459Coding
55. (TGT)412913442913453Coding
56. (TCTT)312950279950290Coding
57. (CAT)412960062960073Coding
58. (TTGT)312967639967650Non coding
59. (TAT)412970853970864Non coding
60. (GATT)312974734974745Coding
61. (CCA)41210065041006515Coding
62. (TTC)41210225401022551Coding
63. (GAG)41210256481025659Coding
64. (GTAAG)31510266381026652Coding
65. (TCT)41210310621031073Coding
66. (TATT)31210457671045778Coding-Non coding
67. (AATA)31210470261047037Coding
68. (AAT)41210565841056595Coding
69. (ATTT)31210579171057928Non coding
70. (AGA)41210898111089822Coding
71. (ACT)41211039411103952Coding
72. (ATA)41211042451104256Coding
73. (TCA)41211100701110081Coding
74. (TTAA)31211390861139097Non coding
75. (TATT)31211645171164528Non coding
76. (GCC)41211674011167412Coding
77. (ATC)41211733771173388Coding
78. (TTAT)31211748741174885Coding-Non coding
79. (GGC)41211771201177131Coding
80. (TTG)41211867681186779Coding
81. (AATT)31211937581193769Coding
82. (CAT)51512210341221048Coding
83. (GAG)41212409421240953Coding
84. (TAAA)31212775431277554Non coding
85. (ATA)41212794201279431Coding-Non coding
86. (TTTCCC)31812904351290452Coding
87. (GCC)41213056531305664Coding
88. (TTC)41213159941316005Coding
89. (TTC)41213202101320221Coding
90. (TTA)41213369621336973Non coding
91. (AATA)31213372851337296Non coding
92. (TAG)41213633371363348Coding
93. (ATC)41213664171366428Coding
94. (TCCA)31213845491384560Coding
95. (AAT)41214129701412981Coding
96. (AACA)31214288941428905Coding
97. (CCA)41214376401437651Coding
98. (CAC)41214649781464989Coding
99. (ATGG)31215061681506179Coding
100. (AGA)41215131091513120Coding
101. (GTTT)31215372941537305Coding
102. (AAG)41215469671546978Coding
103. (CTT)41215746911574702Coding
104. (TGG)41215793191579330Coding
105. (CCG)41216142371614248Coding
106. (ATC)41216699841669995Coding
107. (ACG)41216710081671019Coding
108. (AGTT)31216758551675866Coding-Non coding
109. (TGA)41217008501700861Coding
110. (AAGT)31217165121716523Coding
111. (TAT)41217394441739455Coding
112. (AAATA)31517516021751616Non coding
113. (CAC)41217633701763381Coding
114. (TAA)41218051881805199Coding
115. (GGT)41218149821814993Coding
116. (TTC)41218258431825854Coding
117. (TTTCTT)31818295911829608Coding
118. (TGC)41218439531843964Coding
119. (CAC)41218785151878526Coding
120. (GAA)41218806571880668Coding
121. (TCC)41218962591896270Coding
122. (TTC)41218981881898199Coding
123. (ATGA)31219421241942135Coding
124. (AAT)41219433881943399Coding
125. (ATC)41219618771961888Coding
126. (CGG)41219663241966335Coding
127. (GTTG)31219828281982839Coding
128. (TTGA)31219856321985643Coding
129. (GATT)31219859711985982Non coding
130. (AAAT)31220329702032981Coding
131. (CCAT)31220576702057681Coding
132. (GAT)41220717642071775Coding
133. (TAC)41220835612083572Non coding
134. (GCG)41220845822084593Coding
135. (ATT)41220913772091388Non coding
136. (ATT)41221098232109834Non coding
137. (ATAA)31221112132111224Coding
138. (CAA)41221328722132883Coding
139. (ATA)41221335062133517Non coding
140. (ATT)41221341742134185Coding
141. (AAG)41221698542169865Coding
142. (ATT)41221699552169966Coding
143. (TGT)41221718742171885Coding
144. (ATG)41222081282208139Coding
145. (TTA)41222303162230327Coding
146. (CGT)41222498972249908Coding
147. (TTAA)31222563412256352Non coding
148. (TGG)41222589272258938Coding
149. (GAACCT)31822813932281410Coding
150. (CCT)41223096572309668Coding
151. (AGT)41223269372326948Coding
152. (TCTT)31223318692331880Coding
153. (GGA)41223783772378388Coding
154. (GAA)41224080912408102Coding
155. (AAAT)31224330372433048Coding
156. (TATT)31224369462436957Coding-Non coding
157. (GAT)41224406922440703Coding
158. (CAT)41224468022446813Coding
159. (TCTT)31224709242470935Coding
160. (AATT)31225507022550713Coding
161. (CATTAC)31825648472564864Coding
162. (TGA)41225686992568710Coding
163. (GAT)41225687272568738Coding
164. (AATA)31226165432616554Coding
165. (TTAA)31226269742626985Coding-Non coding
166. (TGA)41226759442675955Coding
167. (GTG)41226825072682518Coding
168. (TCA)41227075002707511Coding
169. (ATG)41227114862711497Non coding
170. (GAT)41227149602714971Coding
171. (AATT)31227320552732066Coding
172. (GCC)41227337012733712Coding
173. (GGGT)31227427202742731Coding
174. (CCG)41227896632789674Coding
175. (GAAA)31227960432796054Coding
176. (CCT)41227989772798988Coding
177. (ATCATG)31828308642830881Coding
178. (CTC)41228926722892683Coding
179. (GATA)31228960422896053Non coding
180. (TTAA)31229152892915300Coding-Non coding
181. (TTA)41229411652941176Coding
182. (CTT)41229481792948190Coding
183. (AAAT)31229618062961817Coding
184. (GCC)41229692492969260Coding
185. (TTG)41229980832998094Coding
186. (AAAG)31230067283006739Coding
187. (ATT)41230202293020240Coding
188. (TTA)41230511363051147Coding
189. (CAT)41230518143051825Coding
190. (AAC)41230663753066386Coding
191. (ATC)41230707083070719Coding
192. (ATG)41230911793091190Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.