CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Cyanobacterium stanieri PCC 7202 (NC_019778 3163382 bp)                                                         Show Alignment       Show Primer       Download
     
          Density of SSR      : 1SSR/ 1.08 kb   Average length of SSR  : 12.35 bp
Coding      : 2273     Non-Coding           : 562   Coding and Non-Coding : 86
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 1 122 59 4 6 192
IMPERFECT 2 119 1461 1098 135 106 2921
Imperfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. TTACC152108621100Non coding
2. GTAGG146620466217Non coding
3. GAGGG147366673679Coding
4. AATTA198015780175Coding
5. AATTT158723387247Coding
6. AGAGA159264192655Coding
7. TTTGA16108334108349Coding
8. TTATC14127975127988Coding
9. TAAAA15132997133011Non coding
10. TGGGA15154611154625Coding
11. CATGG16164750164765Coding
12. AATTT15179635179649Non coding
13. TTACC15194091194105Non coding
14. TTTGT14251570251583Non coding
15. AGTAA14258847258860Coding
16. TTACC15283994284008Coding
17. TAAAT14287048287061Non coding
18. TTTTC14342566342579Coding
19. ATTTT15358742358756Non coding
20. TTTGT15364493364507Coding
21. AAAAT15368489368503Coding
22. ATTAT14377755377768Coding
23. ATTCC14421940421953Coding
24. TTTGA14435418435431Coding
25. TGGGA14471503471516Coding
26. TGAAA14503783503796Coding
27. ATAAA16511699511714Coding
28. TTACC15527531527545Non coding
29. AGAAA14541580541593Coding
30. AGTTT14615105615118Coding
31. TTGGC14623248623261Coding
32. CATAC15650641650655Coding
33. TCTCC14656533656546Coding
34. TAAAA16664384664399Non coding
35. TTTTC14671924671937Coding
36. TCATT14747819747832Coding
37. AATTT14768008768021Non coding
38. CCCAC14771549771562Coding
39. TTATT14850293850306Non coding
40. TACCG16855684855699Coding
41. ATCTG14898025898038Coding
42. TTTTC14898074898087Coding
43. CTTTA14921184921197Coding
44. TTACC15997968997982Coding
45. AATAA1510418361041850Non coding
46. GAAAA1510714301071444Coding
47. AATTT1510921871092201Coding
48. AATCG1410932581093271Coding
49. TTATT1411579261157939Non coding
50. TTAAA1512167951216809Non coding
51. AAATA1412466561246669Coding
52. TAACA1513133551313369Non coding
53. TTTAT1413134131313426Non coding
54. TTGCA1413230021323015Coding
55. CAATA1414156771415690Coding
56. CTTTT1514631091463123Coding
57. ATTTG1414682231468236Coding
58. CAAAA1514740041474018Non coding
59. TTCAA1414818881481901Coding
60. TGAAT1414984931498506Coding
61. TTACC1515685381568552Coding
62. TTTGC1415823441582357Coding
63. ATTTT1516107601610774Coding
64. GGGCA1416151041615117Coding
65. TTTAA1516245431624557Coding
66. CTACA1416278271627840Coding
67. TAAAT1416580291658042Coding
68. TAATT1616622451662260Non coding
69. ACAAA1417046661704679Coding
70. GGGTT1417828031782816Coding
71. AAGCA1518014121801426Non coding
72. TAAAA1618056771805692Non coding
73. GGTAA1518586841858698Non coding
74. GAAAT1418605981860611Coding
75. ATTTT1418656521865665Non coding
76. GGTAA1518725731872587Coding
77. TTAAT1518732171873231Non coding
78. CCATG1618823221882337Non coding
79. AACCA1618945461894561Coding
80. TCATA1419301301930143Coding
81. TTTAA1619523471952362Coding
82. ATTTT1619916121991627Coding-Non coding
83. TAGGG1520031442003158Coding
84. AAAAT1520249402024954Non coding
85. ATATC1420563932056406Coding
86. ATTTA1420782692078282Coding
87. TTTAT1520790022079016Coding
88. ATTTT1520874882087502Coding
89. TTTTA1621018902101905Non coding
90. ACAGA1621142742114289Coding
91. AAAAC1421326842132697Coding
92. TGATT1521454012145415Coding
93. TTATT1422010992201112Non coding
94. AGAAG1622130722213087Coding
95. TAAAT1922603352260353Coding
96. AAGAA1522671192267133Coding
97. TTCTT1422931352293148Coding
98. AAATT1522995512299565Coding
99. AAACA1423190792319092Coding
100. AAACC1423624822362495Coding
101. TTTGC1524195952419609Coding
102. TTTTC1424259352425948Coding
103. AATAT1424292812429294Coding
104. TTTAA1524492682449282Coding
105. GATTG1524625502462564Coding
106. ATTTT1524752202475234Coding
107. GGTAA1525010192501033Coding
108. AATTA1525053452505359Coding
109. AAGTA1425337272533740Coding
110. TTTTG1425476142547627Non coding
111. AATTT1525568702556884Coding
112. AATAT1425953672595380Coding
113. CCAAA1426030752603088Coding
114. CTTTA1526444192644433Coding-Non coding
115. CAAGA1426783292678342Coding
116. AAAGA1526793412679355Non coding
117. TTTGA1626873862687401Coding
118. TTACC1527196112719625Coding
119. ATTTT1527509422750956Non coding
120. GTAAA1627655602765575Coding
121. TTAAC2027688952768914Coding
122. AAATA1527779972778011Non coding
123. AAGAA1427916552791668Coding
124. TCAAA1428026272802640Coding
125. TGAAT1428064522806465Coding
126. TTTGG1628606872860702Coding
127. TTACC1528740662874080Coding
128. ATTTA1428761572876170Coding-Non coding
129. TTAAA1528789572878971Non coding
130. ACTTT1528854942885508Coding
131. TTACC1528943682894382Coding
132. TGAAA1429208782920891Coding
133. AAAAT1430297473029760Non coding
134. AGAAT1530878073087821Coding
135. CCTAA1430927483092761Coding-Non coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.