CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
HOME ABOUT DATABASE ADVANCED SEARCH TUTORIAL STATISTICS CONTACT
       Organism: Cyanobacterium stanieri PCC 7202 (NC_019778 3163382 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 192     Density of SSR      : 1SSR/ 16.48 kb   Average length of SSR  : 12.31 bp
Coding      : 156     Non-Coding           : 28   Coding and Non-Coding : 8
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 1 122 59 4 6 192
IMPERFECT 2 119 1461 1098 135 106 2921
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (TAA)41279887999Coding
2. (ATT)4122911429125Non coding
3. (ACA)4124953149542Coding
4. (TGA)412159535159546Coding
5. (AGA)412192804192815Coding
6. (TGG)412239134239145Coding
7. (ATG)515270208270222Coding
8. (TGG)412277932277943Coding
9. (CAA)412295592295603Coding
10. (CGG)515297780297794Coding
11. (CAC)515351874351888Coding
12. (ACG)412355928355939Coding
13. (CGA)412356565356576Coding
14. (AAT)412363844363855Coding
15. (TGC)412381583381594Coding
16. (TGA)412394080394091Coding
17. (TGT)412396556396567Coding
18. (GAT)412421898421909Coding
19. (TGG)412425490425501Coding
20. (AAG)412520559520570Coding
21. (CTT)412537199537210Coding
22. (ATG)412556575556586Coding
23. (TAT)412561606561617Coding
24. (CGA)412628600628611Coding
25. (GAG)412686456686467Coding
26. (ATC)412688525688536Coding
27. (TCG)412735015735026Coding
28. (GCC)412748513748524Coding
29. (ATC)412768098768109Non coding
30. (CTT)412779812779823Coding
31. (ACC)412806586806597Coding
32. (TGT)412913442913453Coding
33. (CAT)412960062960073Coding
34. (TAT)412970853970864Non coding
35. (CCA)41210065041006515Coding
36. (TTC)41210225401022551Coding
37. (GAG)41210256481025659Coding
38. (TCT)41210310621031073Coding
39. (AAT)41210565841056595Coding
40. (AGA)41210898111089822Coding
41. (ACT)41211039411103952Coding
42. (ATA)41211042451104256Coding
43. (TCA)41211100701110081Coding
44. (GCC)41211674011167412Coding
45. (ATC)41211733771173388Coding
46. (GGC)41211771201177131Coding
47. (TTG)41211867681186779Coding
48. (CAT)51512210341221048Coding
49. (GAG)41212409421240953Coding
50. (ATA)41212794201279431Coding-Non coding
51. (GCC)41213056531305664Coding
52. (TTC)41213159941316005Coding
53. (TTC)41213202101320221Coding
54. (TTA)41213369621336973Non coding
55. (TAG)41213633371363348Coding
56. (ATC)41213664171366428Coding
57. (AAT)41214129701412981Coding
58. (CCA)41214376401437651Coding
59. (CAC)41214649781464989Coding
60. (AGA)41215131091513120Coding
61. (AAG)41215469671546978Coding
62. (CTT)41215746911574702Coding
63. (TGG)41215793191579330Coding
64. (CCG)41216142371614248Coding
65. (ATC)41216699841669995Coding
66. (ACG)41216710081671019Coding
67. (TGA)41217008501700861Coding
68. (TAT)41217394441739455Coding
69. (CAC)41217633701763381Coding
70. (TAA)41218051881805199Coding
71. (GGT)41218149821814993Coding
72. (TTC)41218258431825854Coding
73. (TGC)41218439531843964Coding
74. (CAC)41218785151878526Coding
75. (GAA)41218806571880668Coding
76. (TCC)41218962591896270Coding
77. (TTC)41218981881898199Coding
78. (AAT)41219433881943399Coding
79. (ATC)41219618771961888Coding
80. (CGG)41219663241966335Coding
81. (GAT)41220717642071775Coding
82. (TAC)41220835612083572Non coding
83. (GCG)41220845822084593Coding
84. (ATT)41220913772091388Non coding
85. (ATT)41221098232109834Non coding
86. (CAA)41221328722132883Coding
87. (ATA)41221335062133517Non coding
88. (ATT)41221341742134185Coding
89. (AAG)41221698542169865Coding
90. (ATT)41221699552169966Coding
91. (TGT)41221718742171885Coding
92. (ATG)41222081282208139Coding
93. (TTA)41222303162230327Coding
94. (CGT)41222498972249908Coding
95. (TGG)41222589272258938Coding
96. (CCT)41223096572309668Coding
97. (AGT)41223269372326948Coding
98. (GGA)41223783772378388Coding
99. (GAA)41224080912408102Coding
100. (GAT)41224406922440703Coding
101. (CAT)41224468022446813Coding
102. (TGA)41225686992568710Coding
103. (GAT)41225687272568738Coding
104. (TGA)41226759442675955Coding
105. (GTG)41226825072682518Coding
106. (TCA)41227075002707511Coding
107. (ATG)41227114862711497Non coding
108. (GAT)41227149602714971Coding
109. (GCC)41227337012733712Coding
110. (CCG)41227896632789674Coding
111. (CCT)41227989772798988Coding
112. (CTC)41228926722892683Coding
113. (TTA)41229411652941176Coding
114. (CTT)41229481792948190Coding
115. (GCC)41229692492969260Coding
116. (TTG)41229980832998094Coding
117. (ATT)41230202293020240Coding
118. (TTA)41230511363051147Coding
119. (CAT)41230518143051825Coding
120. (AAC)41230663753066386Coding
121. (ATC)41230707083070719Coding
122. (ATG)41230911793091190Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.