CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Cyanobacterium stanieri PCC 7202 (NC_019778 3163382 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 192     Density of SSR      : 1SSR/ 16.48 kb   Average length of SSR  : 12.31 bp
Coding      : 156     Non-Coding           : 28   Coding and Non-Coding : 8
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 1 122 59 4 6 192
IMPERFECT 2 119 1461 1098 135 106 2921
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (CCCT)3124319743208Non coding
2. (AAGA)3125099151002Coding
3. (CAGA)312156679156690Coding
4. (AATT)312166880166891Coding
5. (TTTA)312292249292260Non coding
6. (AACT)312400298400309Coding
7. (TAAT)312410438410449Coding
8. (AATT)312447772447783Non coding
9. (TTTA)312470405470416Non coding
10. (ATTT)312479638479649Coding
11. (ATTA)312554416554427Non coding
12. (TAAT)312570303570314Coding-Non coding
13. (TTAA)312609667609678Non coding
14. (CTAA)312646949646960Non coding
15. (GAAA)312703367703378Coding
16. (TTAT)312804174804185Coding
17. (AATT)312806201806212Coding
18. (TATT)312809856809867Non coding
19. (TTCT)312881448881459Coding
20. (TCTT)312950279950290Coding
21. (TTGT)312967639967650Non coding
22. (GATT)312974734974745Coding
23. (TATT)31210457671045778Coding-Non coding
24. (AATA)31210470261047037Coding
25. (ATTT)31210579171057928Non coding
26. (TTAA)31211390861139097Non coding
27. (TATT)31211645171164528Non coding
28. (TTAT)31211748741174885Coding-Non coding
29. (AATT)31211937581193769Coding
30. (TAAA)31212775431277554Non coding
31. (AATA)31213372851337296Non coding
32. (TCCA)31213845491384560Coding
33. (AACA)31214288941428905Coding
34. (ATGG)31215061681506179Coding
35. (GTTT)31215372941537305Coding
36. (AGTT)31216758551675866Coding-Non coding
37. (AAGT)31217165121716523Coding
38. (ATGA)31219421241942135Coding
39. (GTTG)31219828281982839Coding
40. (TTGA)31219856321985643Coding
41. (GATT)31219859711985982Non coding
42. (AAAT)31220329702032981Coding
43. (CCAT)31220576702057681Coding
44. (ATAA)31221112132111224Coding
45. (TTAA)31222563412256352Non coding
46. (TCTT)31223318692331880Coding
47. (AAAT)31224330372433048Coding
48. (TATT)31224369462436957Coding-Non coding
49. (TCTT)31224709242470935Coding
50. (AATT)31225507022550713Coding
51. (AATA)31226165432616554Coding
52. (TTAA)31226269742626985Coding-Non coding
53. (AATT)31227320552732066Coding
54. (GGGT)31227427202742731Coding
55. (GAAA)31227960432796054Coding
56. (GATA)31228960422896053Non coding
57. (TTAA)31229152892915300Coding-Non coding
58. (AAAT)31229618062961817Coding
59. (AAAG)31230067283006739Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.