CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Cyanobium gracile PCC 6307 (NC_019675 3342365 bp)                                                               Show Primer       Download
Compound : 1     Perfect Compound : 0   Overlapping Compound : 1
Perfect      : 805     Density of SSR      : 1SSR/ 4.15 kb   Average length of SSR  : 12.73 bp
Coding      : 765     Non-Coding           : 40   Coding and Non-Coding : 1
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 5 0 681 83 9 27 805
IMPERFECT 6 58 4641 1300 167 255 6427
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (GCC)51544534467Coding
2. (CAG)41296739684Coding
3. (GGC)5151770417718Coding
4. (GCC)4122068520696Coding
5. (GCC)4122223722248Coding
6. (GCA)4122930829319Coding
7. (CGG)4123302333034Coding
8. (CCG)5153692936943Coding
9. (CCG)5154898548999Coding
10. (CCA)4125521555226Coding
11. (CAG)4125794557956Coding
12. (GCC)4127520375214Coding
13. (GGC)4127624976260Coding
14. (CGG)4127890578916Coding
15. (TGG)4128202882039Coding
16. (TGC)4128275182762Coding
17. (CGG)4128400684017Coding
18. (GTG)4128570985720Coding
19. (CCG)4129187591886Coding
20. (GCT)4129203592046Coding
21. (TGC)5159275892772Coding
22. (CCCT)3129816398174Coding
23. (GCA)515103851103865Coding
24. (CCA)412105380105391Coding
25. (GCC)412108401108412Coding
26. (AATC)312110790110801Non coding
27. (G)1515136938136952Non coding
28. (CCCG)312163491163502Non coding
29. (CGC)412180579180590Coding
30. (CCG)412183183183194Coding
31. (TGC)412189955189966Coding
32. (GGC)412204738204749Coding
33. (CTG)412206528206539Coding
34. (CTG)412206822206833Coding
35. (GCCA)312211157211168Coding
36. (GCT)412217854217865Coding
37. (CGGCG)315227063227077Coding
38. (CGG)412227774227785Coding
39. (CACCGG)318228060228077Coding
40. (CAC)412287704287715Coding
41. (GCC)515325255325269Coding
42. (CTG)412329500329511Coding
43. (CTG)412330343330354Coding
44. (CTG)412330778330789Coding
45. (AGC)412337890337901Coding
46. (CAG)412338306338317Coding
47. (CAG)412341730341741Coding
48. (CGGC)312342604342615Coding
49. (GGCC)312343452343463Non coding
50. (GGC)412353821353832Coding
51. (AGC)412354692354703Coding
52. (CCA)412356408356419Coding
53. (CCAGGG)318357848357865Coding
54. (CAG)412360254360265Coding
55. (TGC)412364502364513Coding
56. (GCG)412365965365976Coding
57. (GCC)412366314366325Coding
58. (CGG)412374529374540Coding
59. (GCC)412375587375598Coding
60. (GGC)412376573376584Coding
61. (GGT)412384279384290Coding
62. (GCG)412393572393583Coding
63. (GCC)412396489396500Coding
64. (GGC)412397405397416Coding
65. (GCCG)312406522406533Coding
66. (GCC)412412359412370Coding
67. (CTGG)312420568420579Coding
68. (CGG)412426611426622Non coding
69. (GCCAGG)318427229427246Coding
70. (CGG)412427290427301Coding
71. (GCC)412430626430637Coding
72. (GGCG)312431818431829Coding
73. (CGC)412437156437167Coding
74. (CAG)515447666447680Coding
75. (CGC)412452722452733Coding
76. (CCG)412452955452966Coding
77. (CAG)412471079471090Coding
78. (GCC)412475754475765Coding
79. (GGT)412478044478055Coding
80. (AGC)515481960481974Coding
81. (CTG)412487988487999Coding
82. (GCC)412488941488952Coding
83. (CTG)412490151490162Coding
84. (CTC)412491587491598Coding
85. (CAG)412491704491715Coding
86. (CCG)412507546507557Coding
87. (GCC)412512551512562Coding
88. (GCCA)312514059514070Coding
89. (CAG)412515210515221Coding
90. (GCG)412515331515342Coding
91. (TGC)412524607524618Coding
92. (GGC)412525909525920Coding
93. (CAG)412526203526214Coding
94. (GCC)515535007535021Coding
95. (GGC)412535644535655Coding
96. (GCT)412541151541162Coding
97. (GACCAT)318545233545250Coding
98. (GCC)412546206546217Coding
99. (CAG)412551260551271Coding
100. (GCG)412551299551310Coding
101. (CAG)515552122552136Coding
102. (TGC)412558407558418Coding
103. (GGC)412558422558433Coding
104. (GCG)515568203568217Coding
105. (GGAC)312568354568365Coding
106. (CGC)412576222576233Coding
107. (GCC)412576674576685Coding
108. (CCG)412584904584915Coding
109. (CAG)412586355586366Coding
110. (CGG)412588002588013Coding
111. (GGC)515592287592301Coding
112. (GCG)412594017594028Coding
113. (GCC)412598522598533Coding
114. (GCG)412607609607620Coding
115. (TTGCCG)318613803613820Coding
116. (GGT)412620500620511Coding
117. (GGT)412622399622410Coding
118. (CGG)412625324625335Coding
119. (CCG)515636277636291Coding
120. (CTG)412638549638560Coding
121. (CTG)412639014639025Coding
122. (CTG)412639311639322Coding
123. (GGC)412639678639689Coding
124. (TGC)412639809639820Coding
125. (CTG)412640114640125Coding
126. (CGC)412640187640198Coding
127. (GCG)412642816642827Coding
128. (GGC)412648042648053Coding
129. (TGG)412651429651440Coding
130. (CAT)412655601655612Coding
131. (GCG)412658005658016Coding
132. (GCA)412659302659313Coding
133. (GGGA)312669067669078Coding
134. (GCG)412671152671163Coding
135. (CGG)515672474672488Coding
136. (CCGG)312674940674951Coding
137. (GGCC)312680117680128Coding
138. (CAGC)312680440680451Coding
139. (TGGC)312700539700550Coding
140. (GTC)412707843707854Coding
141. (GGC)412719386719397Coding
142. (TGC)412722982722993Coding
143. (GCA)412732341732352Coding
144. (CAG)412738069738080Coding
145. (GGC)412740438740449Coding
146. (G)1212745448745459Non coding
147. (TGC)412748139748150Coding
148. (GGCC)312750074750085Non coding
149. (CGG)515752626752640Coding
150. (CGG)412752761752772Coding
151. (CAG)412752792752803Coding
152. (GGCC)312754018754029Coding
153. (CGG)412756180756191Coding
154. (GCC)412759090759101Coding
155. (CAG)515764407764421Coding
156. (CTG)412765736765747Coding
157. (GCGGC)315768937768951Coding
158. (CGG)412777809777820Coding
159. (GCA)515778340778354Coding
160. (GCC)412781774781785Coding
161. (AGC)412782962782973Coding
162. (AGC)412783244783255Coding
163. (CAC)412783455783466Coding
164. (CTG)412785886785897Coding
165. (GCC)412789334789345Non coding
166. (GGC)412790935790946Coding
167. (CGGC)312799964799975Coding
168. (CAG)412800786800797Coding
169. (GGC)618814726814743Coding
170. (CTG)412820142820153Coding
171. (CGGG)312825341825352Non coding
172. (TGG)412825702825713Coding
173. (CGGC)312830593830604Coding
174. (CTG)515831301831315Coding
175. (TGC)412835999836010Coding
176. (CGC)515839194839208Coding
177. (GGT)412840142840153Coding
178. (TGG)412840276840287Coding
179. (GGT)412844243844254Coding
180. (CCG)412853041853052Coding
181. (CCG)515853059853073Coding
182. (GCC)412853076853087Coding
183. (GCG)412858397858408Non coding
184. (CAG)412862311862322Coding
185. (GGCG)312865866865877Coding
186. (TGG)412865931865942Coding
187. (GTG)515865945865959Coding
188. (TGGCGA)318871723871740Coding
189. (TGG)412874571874582Coding
190. (GGC)412887208887219Coding
191. (CCA)412890230890241Coding
192. (CGG)412902866902877Coding
193. (CTG)412907836907847Coding
194. (GCT)515908081908095Coding
195. (CGC)412908252908263Coding
196. (CGG)412916961916972Coding
197. (GGC)515916983916997Coding
198. (GGC)412917034917045Coding
199. (CTGG)312917263917274Coding
200. (GCT)412926071926082Coding
201. (GCG)412932088932099Coding
202. (CGG)412932170932181Coding
203. (GGT)412951922951933Coding
204. (GCT)412956078956089Coding
205. (CAG)515961570961584Coding
206. (GCC)412962997963008Coding
207. (GCG)412973212973223Coding
208. (CGC)515982855982869Coding
209. (CGC)515990300990314Coding
210. (CGC)412992483992494Coding
211. (CTG)412994862994873Coding
212. (CTG)51510000761000090Coding
213. (CGC)41210117571011768Coding
214. (CAC)41210128571012868Coding
215. (GGGGA)31510160361016050Non coding
216. (CGC)41210266801026691Coding
217. (GCC)41210277931027804Coding
218. (GGT)41210312151031226Coding
219. (TGC)41210340801034091Coding
220. (GGCT)31210430741043085Non coding
221. (GGC)41210522891052300Coding
222. (GGCC)31210634281063439Coding
223. (CGC)41210677931067804Coding
224. (GCT)41210716521071663Coding
225. (CTG)41210724081072419Coding
226. (AGC)41210779261077937Coding
227. (GGT)41210797591079770Coding
228. (GGC)41210836471083658Coding
229. (GCC)41210840251084036Coding
230. (GCCTGG)31810842511084268Coding
231. (CAG)41210842831084294Coding
232. (GCC)41210843541084365Coding
233. (CGG)41210879511087962Coding
234. (ACG)41210960321096043Coding
235. (ACG)41210984081098419Coding
236. (ACG)41210990891099100Coding
237. (TGC)41211035421103553Coding
238. (GCG)41211048271104838Coding
239. (TGG)51511095741109588Coding
240. (GGC)41211138791113890Coding
241. (GGC)41211147181114729Coding
242. (GCCG)31211169831116994Coding
243. (GCA)51511210681121082Coding
244. (GGC)41211219091121920Coding
245. (CGC)51511314661131480Coding
246. (CTG)51511316011131615Coding
247. (CGC)41211349531134964Coding
248. (CGG)41211354981135509Coding
249. (CCGC)31211375651137576Coding
250. (TGC)41211421901142201Coding
251. (GCC)41211489851148996Coding
252. (GCC)41211528451152856Coding
253. (GCC)51511530111153025Coding
254. (GGCC)31211543431154354Coding
255. (GCC)41211546921154703Coding
256. (GGC)41211598551159866Coding
257. (CAG)41211632391163250Coding
258. (CGC)41211663671166378Coding
259. (GCG)41211701031170114Coding
260. (GCCG)31211709361170947Coding
261. (CCGG)31211755971175608Coding
262. (CTG)41211804911180502Coding
263. (CCG)41211833661183377Coding
264. (CTG)41211960571196068Coding
265. (GGC)41212023501202361Coding
266. (GGC)41212092961209307Coding
267. (CTC)41212203231220334Coding
268. (CTG)41212218051221816Coding
269. (GCC)41212235101223521Coding
270. (CCG)72112285921228612Coding
271. (GCC)41212287831228794Coding
272. (CAA)51512302481230262Coding
273. (GCCG)31212330521233063Coding
274. (CCGG)31212369341236945Non coding
275. (CCA)41212380351238046Coding
276. (GGT)61812405021240519Coding
277. (CGG)41212439671243978Coding
278. (GCT)61812442981244315Coding
279. (GCC)41212452291245240Coding
280. (GCA)41212478541247865Coding
281. (CAG)41212480831248094Coding
282. (CCGGCC)31812481231248140Coding
283. (AGC)41212481561248167Coding
284. (CGG)51512578471257861Coding
285. (GCT)51512612881261302Coding
286. (TGC)41212617611261772Coding
287. (GCA)41212682461268257Coding
288. (GTCA)31212724481272459Coding
289. (GCTG)31212838451283856Coding
290. (CCGG)31212944821294493Coding
291. (TGC)41212988651298876Coding
292. (GGC)41213002251300236Coding
293. (CAG)41213007511300762Coding
294. (CCG)41213046471304658Coding
295. (GCA)41213062471306258Coding
296. (CCG)41213067681306779Coding
297.