CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Cyanobium gracile PCC 6307 (NC_019675 3342365 bp)                                                               Show Primer       Download
Compound : 1     Perfect Compound : 0   Overlapping Compound : 1
Perfect      : 805     Density of SSR      : 1SSR/ 4.15 kb   Average length of SSR  : 12.73 bp
Coding      : 765     Non-Coding           : 40   Coding and Non-Coding : 1
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 5 0 681 83 9 27 805
IMPERFECT 6 58 4641 1300 167 255 6427
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (CCCT)3129816398174Coding
2. (AATC)312110790110801Non coding
3. (CCCG)312163491163502Non coding
4. (GCCA)312211157211168Coding
5. (CGGC)312342604342615Coding
6. (GGCC)312343452343463Non coding
7. (GCCG)312406522406533Coding
8. (CTGG)312420568420579Coding
9. (GGCG)312431818431829Coding
10. (GCCA)312514059514070Coding
11. (GGAC)312568354568365Coding
12. (GGGA)312669067669078Coding
13. (CCGG)312674940674951Coding
14. (GGCC)312680117680128Coding
15. (CAGC)312680440680451Coding
16. (TGGC)312700539700550Coding
17. (GGCC)312750074750085Non coding
18. (GGCC)312754018754029Coding
19. (CGGC)312799964799975Coding
20. (CGGG)312825341825352Non coding
21. (CGGC)312830593830604Coding
22. (GGCG)312865866865877Coding
23. (CTGG)312917263917274Coding
24. (GGCT)31210430741043085Non coding
25. (GGCC)31210634281063439Coding
26. (GCCG)31211169831116994Coding
27. (CCGC)31211375651137576Coding
28. (GGCC)31211543431154354Coding
29. (GCCG)31211709361170947Coding
30. (CCGG)31211755971175608Coding
31. (GCCG)31212330521233063Coding
32. (CCGG)31212369341236945Non coding
33. (GTCA)31212724481272459Coding
34. (GCTG)31212838451283856Coding
35. (CCGG)31212944821294493Coding
36. (TGCC)31213255731325584Coding
37. (CCAC)31213342021334213Coding
38. (CCGC)31213838551383866Coding
39. (GGCC)31214129971413008Non coding
40. (GCCG)31214483281448339Coding
41. (GCCC)31214696201469631Coding
42. (GCCG)31215720001572011Non coding
43. (CCGG)31215906291590640Coding
44. (CTGC)31216134331613444Coding
45. (CGGC)31216315721631583Coding
46. (GCCA)31217403241740335Coding
47. (GCCA)31217725701772581Coding
48. (GGCC)31217999681799979Coding
49. (TGGG)31218359681835979Coding
50. (CCGG)31219461181946129Coding
51. (ATCC)31219519561951967Non coding
52. (CCTT)31219597841959795Coding
53. (GCCG)31219933001993311Coding
54. (CCGG)31220656622065673Non coding
55. (AGGC)31221284712128482Coding
56. (CGGC)31222486702248681Non coding
57. (CCAG)31222882442288255Coding
58. (GGCC)31223420752342086Coding
59. (CCGG)31223574952357506Coding
60. (CAGC)31224380612438072Coding
61. (GCGG)31224447042444715Coding
62. (CGCC)31224515792451590Coding
63. (CGGC)31225353622535373Coding
64. (GCCG)31225817222581733Coding
65. (CGGC)31226120492612060Coding
66. (CGGC)31227040172704028Coding
67. (CGGG)31227349732734984Coding
68. (GCCG)31227700622770073Coding
69. (GCCA)31228345762834587Coding
70. (GCCG)31228634582863469Coding
71. (GCCG)31228809262880937Coding
72. (CGGC)31228846412884652Coding
73. (TCCG)31229861272986138Coding
74. (CCGG)41629956632995678Coding
75. (CCTT)31230738433073854Non coding
76. (GCCG)31231089253108936Coding
77. (GGCC)31231550373155048Non coding
78. (CGCC)31231576953157706Coding
79. (CCGG)31231782323178243Coding
80. (GGCT)31231997573199768Non coding
81. (CGGG)31232570023257013Non coding
82. (CCCT)31232924103292421Coding
83. (ACCG)31233083103308321Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.