CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
HOME ABOUT DATABASE ADVANCED SEARCH TUTORIAL STATISTICS CONTACT
       Organism: Cyanothece sp. ATCC 51142 (NC_010546 4934272 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 284     Density of SSR      : 1SSR/ 17.37 kb   Average length of SSR  : 12.61 bp
Coding      : 231     Non-Coding           : 44   Coding and Non-Coding : 9
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 1 2 158 98 15 10 284
IMPERFECT 4 127 2230 1469 193 127 4150
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (CAA)4121297712988Coding
2. (TAT)4122923429245Non coding
3. (TTGGG)3154542745441Coding
4. (TAA)4124704847059Coding
5. (AGA)4124894748958Coding
6. (GAA)4126368063691Coding
7. (TTC)4127800478015Coding
8. (GTAG)3128234682357Non coding
9. (AGC)4129325393264Coding
10. (T)1313112800112812Coding
11. (AAG)412132394132405Coding
12. (AGA)412135883135894Coding
13. (AT)612137870137881Coding
14. (TTA)412147831147842Coding
15. (TTCT)312165888165899Non coding
16. (CAT)412212614212625Coding
17. (CTT)412225547225558Coding
18. (TAAAA)315255860255874Non coding
19. (GTT)412257447257458Coding
20. (TTG)412271815271826Coding
21. (GCT)412275485275496Coding
22. (TTC)412275972275983Coding
23. (TTA)412278639278650Coding
24. (TTAA)312282354282365Coding-Non coding
25. (TCG)412289968289979Coding
26. (ACC)515311923311937Coding
27. (TAA)412350412350423Coding
28. (GCT)412403246403257Coding
29. (ATT)412411352411363Coding
30. (TTA)412411926411937Coding
31. (ACG)412434151434162Coding
32. (AGC)515471212471226Coding
33. (AAATA)315478982478996Coding
34. (TTA)412479456479467Coding
35. (CAAT)312494442494453Non coding
36. (TAAA)312518845518856Coding
37. (TTTG)312528007528018Coding
38. (TTTG)312532261532272Coding
39. (AAT)412558922558933Non coding
40. (CCTCT)315570147570161Non coding
41. (ACA)412574205574216Coding
42. (TTAT)312601664601675Non coding
43. (TCT)412619884619895Coding
44. (AAAG)312621397621408Coding
45. (TTG)412628029628040Coding
46. (ATA)412678901678912Non coding
47. (CAA)412694372694383Coding
48. (AGC)412695294695305Coding
49. (CTTT)312709938709949Coding
50. (GAA)412754342754353Coding
51. (CTG)412767272767283Coding
52. (GAAA)312791063791074Non coding
53. (AGTT)312813148813159Coding
54. (CAA)412870492870503Coding
55. (GAA)412907911907922Coding
56. (AGAACA)318922161922178Coding
57. (GGTGGC)318923164923181Coding
58. (AGC)412932934932945Coding
59. (GTAA)31210094841009495Coding
60. (AAAT)31210218721021883Coding
61. (CAG)41211154601115471Coding
62. (CGG)41211348921134903Coding
63. (GTAAA)31511354891135503Coding
64. (AATC)31211424141142425Coding
65. (TTAT)31212156841215695Coding
66. (CATA)31212215871221598Coding
67. (CTG)41212559591255970Coding
68. (TAAA)31212621671262178Non coding
69. (TAA)41212740001274011Coding
70. (ATA)41212909901291001Non coding
71. (TAAT)31213109831310994Coding
72. (AAT)51513226541322668Coding
73. (TAT)41213674171367428Coding
74. (GAT)41213715521371563Coding
75. (GAA)51513715671371581Coding
76. (TAAT)31213817071381718Non coding
77. (CTT)41214020001402011Coding
78. (TTA)41214031721403183Coding
79. (AGA)41214100721410083Coding
80. (TTCT)31214167241416735Coding
81. (TTAT)31214236711423682Non coding
82. (CTG)51514637301463744Coding
83. (AAAC)31214830131483024Non coding
84. (CTC)41215067031506714Coding
85. (ATG)41215096761509687Coding
86. (ATA)41215689981569009Coding
87. (GTTT)31215763461576357Coding
88. (TAAG)31216042781604289Coding
89. (AATT)31216075331607544Coding
90. (TTC)41216207861620797Coding
91. (TTAT)31216241391624150Coding
92. (AGC)41216309421630953Coding
93. (TTAT)31216519791651990Non coding
94. (AAAT)31216917471691758Coding
95. (GATG)31217174441717455Coding
96. (AGTT)31217322721732283Non coding
97. (TTTA)31217539641753975Coding
98. (TCTT)31217704531770464Coding
99. (CTT)41217795891779600Coding
100. (TAAA)31218094831809494Coding
101. (TTC)41218226101822621Coding
102. (TGC)41218454271845438Coding
103. (ATTA)31218551431855154Coding-Non coding
104. (GGAA)31218698711869882Coding
105. (TAAA)31218705191870530Coding
106. (TCAA)31218754711875482Coding
107. (ATTA)31218925111892522Coding
108. (AAG)41219000851900096Coding
109. (GGGT)31219253891925400Coding
110. (AACC)31219504561950467Coding
111. (ATTG)31219687421968753Non coding
112. (AACGGC)31820252492025266Coding
113. (AATA)31220580392058050Coding
114. (TTA)41220653952065406Coding
115. (CTG)41220778882077899Coding
116. (TTTA)31220836762083687Coding
117. (CAT)41221233392123350Coding
118. (ATT)41221565752156586Coding
119. (ATGA)31221625522162563Non coding
120. (AGTT)31221807982180809Coding
121. (CCA)41221926792192690Coding
122. (TTAT)31222286732228684Non coding
123. (CAT)41222818582281869Non coding
124. (ATTA)31222968762296887Coding
125. (AGA)41223165502316561Coding
126. (CAG)41223276622327673Coding
127. (CGGTGG)31823393112339328Coding
128. (ATAA)31223532782353289Non coding
129. (ATTA)31223809282380939Non coding
130. (TAA)41224011582401169Coding
131. (GACAA)31524037752403789Coding
132. (GGTTT)31524297212429735Coding
133. (AATA)31224450212445032Coding
134. (GATAA)42024521772452196Non coding
135. (TATC)31224589222458933Coding
136. (AAT)41224664452466456Coding
137. (TCT)41224705512470562Coding
138. (AACT)31224711252471136Coding
139. (TAT)41224942432494254Coding
140. (ATTT)31225119882511999Coding
141. (AAC)41225161412516152Coding
142. (TA)61225524892552500Non coding
143. (AAT)41225859152585926Coding
144. (ATA)41226008712600882Coding
145. (GTTT)31226192542619265Coding
146. (TAAA)31226596062659617Coding
147. (ATA)41226761722676183Non coding
148. (TTA)41226815712681582Coding
149. (TAT)72126888842688904Non coding
150. (CTG)41226892242689235Coding
151. (GCT)41227200012720012Coding
152. (TTA)41227325822732593Coding
153. (TTC)41227431142743125Coding
154. (GTTC)31227480882748099Coding
155. (AAAT)31227502962750307Coding
156. (TAA)41227673292767340Coding
157. (AGA)41227888732788884Coding
158. (TAA)41227903052790316Coding
159. (AAT)41227996392799650Coding
160. (TGC)41228126662812677Coding
161. (GGGTTT)31828362162836233Coding
162. (TTTA)31228768122876823Coding
163. (AAG)41228969732896984Coding
164. (ATTA)31229058612905872Coding-Non coding
165. (GGT)41229418422941853Coding
166. (TTCTCC)31829508552950872Coding
167. (TTTGCT)31829934352993452Coding
168. (AAT)51529957562995770Non coding
169. (TAA)41230148133014824Coding
170. (AGA)41230181823018193Coding
171. (AAT)41230244003024411Coding
172. (TAAT)31230299543029965Coding
173. (CAAC)31230347163034727Coding
174. (TAAAAA)31830432403043257Coding
175. (TATGT)31530700443070058Coding
176. (TTG)41230988333098844Coding
177. (ATAA)31230998613099872Non coding
178. (GAA)41231069023106913Coding
179. (TGT)41231379963138007Coding
180. (GAA)41231775583177569Coding
181. (GAT)41231850603185071Coding
182. (ATTA)31232171163217127Non coding
183. (ATTT)31232284463228457Coding
184. (TAAT)31232591633259174Coding
185. (CAAA)31232628163262827Coding
186. (ATC)41232764973276508Coding
187. (TCA)51532765253276539Coding
188. (GAA)41232866273286638Coding
189. (TGT)41232912713291282Coding
190. (TGC)41233172823317293Coding
191. (ATTA)31233194563319467Non coding
192. (TTC)41233305853330596Coding
193. (TCACA)31533450013345015Non coding
194. (AATC)31233727203372731Coding
195. (TAA)41233729283372939Coding
196. (AATA)31233731343373145Coding
197. (AAAT)31233963163396327Coding
198. (AATT)31233980613398072Non coding
199. (GTCT)31234377683437779Non coding
200. (ACT)41234865113486522Coding
201. (AGC)41235111833511194Coding
202. (CGA)41235429303542941Coding
203. (ATG)41235469163546927Coding
204. (TTGA)31235787393578750Coding
205. (TAAAA)31535876923587706Coding
206. (CTT)41235931563593167Coding
207. (CAG)41236037163603727Coding
208. (AAT)61836171493617166Coding
209. (AGTC)31236331323633143Coding
210. (TTA)41236526923652703Coding
211. (CTG)41236749103674921Coding
212. (AATT)31236768313676842Non coding
213. (TAA)41237083873708398Non coding
214. (TCCTA)31537604203760434Non coding
215. (ACCA)31237652373765248Coding
216. (AAT)41237727113772722Coding
217. (TGGCAA)53037773243777353Coding
218. (AATT)31238045543804565Coding-Non coding
219. (TAA)41238299333829944Coding
220. (CGA)41238300663830077Coding
221. (AAT)41238395903839601Coding
222. (AACCC)31538873593887373Coding
223. (TAAC)31239364173936428Coding
224. (TAAT)31239387843938795Coding
225. (TAA)41239660183966029Coding
226. (AATT)31239773143977325Coding
227. (TAT)41239784663978477Coding
228. (AAT)41240190464019057Coding-Non coding
229. (CAAT)31240238974023908Coding
230. (AAAT)31240325584032569Non coding
231. (CAG)41240355354035546Coding
232. (ACA)41240565914056602Coding
233. (ATC)41240598734059884Coding
234. (ACC)41240824514082462Coding
235. (TAAT)31240887374088748Non coding
236. (TTA)41240962894096300Coding
237. (GTC)41241306264130637Coding
238. (TCA)41241392084139219Coding
239. (CAAT)41641478074147822Coding-Non coding
240. (ATTT)31242023664202377Coding
241. (TTG)41242217894221800Coding
242. (ATCAAC)31842290744229091Coding
243. (TTA)41242309244230935Coding
244. (ACC)41242578024257813Coding
245. (CAG)41242594544259465Coding
246. (ATT)41242803654280376Coding
247. (AGA)41243211994321210Coding
248. (GTT)41243228704322881Coding
249. (TTA)41243318844331895Coding
250. (TGG)41243399464339957Coding
251. (AATT)31243703994370410Non coding
252. (GCT)41243871554387166Coding
253. (CAT)41244390424439053Coding
254. (CAT)41244390694439080Coding
255. (CAG)41244490004449011Coding
256. (ACA)51544518704451884Coding
257. (AATT)31244703034470314Non coding
258. (ATAA)31244863784486389Coding-Non coding
259. (ATC)41245158674515878Coding
260. (TAT)41245159974516008Coding
261. (ATAA)31245615454561556Coding-Non coding
262. (TTAA)31245633064563317Non coding
263. (CATC)31245714294571440Coding
264. (CGA)41245902364590247Coding
265. (GAA)51546291934629207Coding
266. (TTA)41246358094635820Coding
267. (ATT)41246527834652794Coding
268. (TTTAT)31546653464665360Non coding
269. (AGAA)31246745274674538Coding
270. (ATA)41246767564676767Coding
271. (TAA)41246768234676834Coding
272. (TTTA)31246904264690437Coding
273. (AAC)41247050734705084Coding
274. (CTC)41247127814712792Coding
275. (ATAA)31247223194722330Coding
276. (TGAT)31247613104761321Coding
277. (TAAT)31247726514772662Coding-Non coding
278. (TTC)41247914104791421Coding
279. (AAT)41247967364796747Coding
280. (ATC)41248118864811897Coding
281. (CAAT)31248384364838447Non coding
282. (CAA)51548598904859904Coding
283. (TTCCT)31548666164866630Coding
284. (GAC)41249238704923881Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.