CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Cyanothece sp. ATCC 51142 (NC_010546 4934272 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 284     Density of SSR      : 1SSR/ 17.37 kb   Average length of SSR  : 12.61 bp
Coding      : 231     Non-Coding           : 44   Coding and Non-Coding : 9
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 1 2 158 98 15 10 284
IMPERFECT 4 127 2230 1469 193 127 4150
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (CAA)4121297712988Coding
2. (TAT)4122923429245Non coding
3. (TAA)4124704847059Coding
4. (AGA)4124894748958Coding
5. (GAA)4126368063691Coding
6. (TTC)4127800478015Coding
7. (AGC)4129325393264Coding
8. (AAG)412132394132405Coding
9. (AGA)412135883135894Coding
10. (TTA)412147831147842Coding
11. (CAT)412212614212625Coding
12. (CTT)412225547225558Coding
13. (GTT)412257447257458Coding
14. (TTG)412271815271826Coding
15. (GCT)412275485275496Coding
16. (TTC)412275972275983Coding
17. (TTA)412278639278650Coding
18. (TCG)412289968289979Coding
19. (ACC)515311923311937Coding
20. (TAA)412350412350423Coding
21. (GCT)412403246403257Coding
22. (ATT)412411352411363Coding
23. (TTA)412411926411937Coding
24. (ACG)412434151434162Coding
25. (AGC)515471212471226Coding
26. (TTA)412479456479467Coding
27. (AAT)412558922558933Non coding
28. (ACA)412574205574216Coding
29. (TCT)412619884619895Coding
30. (TTG)412628029628040Coding
31. (ATA)412678901678912Non coding
32. (CAA)412694372694383Coding
33. (AGC)412695294695305Coding
34. (GAA)412754342754353Coding
35. (CTG)412767272767283Coding
36. (CAA)412870492870503Coding
37. (GAA)412907911907922Coding
38. (AGC)412932934932945Coding
39. (CAG)41211154601115471Coding
40. (CGG)41211348921134903Coding
41. (CTG)41212559591255970Coding
42. (TAA)41212740001274011Coding
43. (ATA)41212909901291001Non coding
44. (AAT)51513226541322668Coding
45. (TAT)41213674171367428Coding
46. (GAT)41213715521371563Coding
47. (GAA)51513715671371581Coding
48. (CTT)41214020001402011Coding
49. (TTA)41214031721403183Coding
50. (AGA)41214100721410083Coding
51. (CTG)51514637301463744Coding
52. (CTC)41215067031506714Coding
53. (ATG)41215096761509687Coding
54. (ATA)41215689981569009Coding
55. (TTC)41216207861620797Coding
56. (AGC)41216309421630953Coding
57. (CTT)41217795891779600Coding
58. (TTC)41218226101822621Coding
59. (TGC)41218454271845438Coding
60. (AAG)41219000851900096Coding
61. (TTA)41220653952065406Coding
62. (CTG)41220778882077899Coding
63. (CAT)41221233392123350Coding
64. (ATT)41221565752156586Coding
65. (CCA)41221926792192690Coding
66. (CAT)41222818582281869Non coding
67. (AGA)41223165502316561Coding
68. (CAG)41223276622327673Coding
69. (TAA)41224011582401169Coding
70. (AAT)41224664452466456Coding
71. (TCT)41224705512470562Coding
72. (TAT)41224942432494254Coding
73. (AAC)41225161412516152Coding
74. (AAT)41225859152585926Coding
75. (ATA)41226008712600882Coding
76. (ATA)41226761722676183Non coding
77. (TTA)41226815712681582Coding
78. (TAT)72126888842688904Non coding
79. (CTG)41226892242689235Coding
80. (GCT)41227200012720012Coding
81. (TTA)41227325822732593Coding
82. (TTC)41227431142743125Coding
83. (TAA)41227673292767340Coding
84. (AGA)41227888732788884Coding
85. (TAA)41227903052790316Coding
86. (AAT)41227996392799650Coding
87. (TGC)41228126662812677Coding
88. (AAG)41228969732896984Coding
89. (GGT)41229418422941853Coding
90. (AAT)51529957562995770Non coding
91. (TAA)41230148133014824Coding
92. (AGA)41230181823018193Coding
93. (AAT)41230244003024411Coding
94. (TTG)41230988333098844Coding
95. (GAA)41231069023106913Coding
96. (TGT)41231379963138007Coding
97. (GAA)41231775583177569Coding
98. (GAT)41231850603185071Coding
99. (ATC)41232764973276508Coding
100. (TCA)51532765253276539Coding
101. (GAA)41232866273286638Coding
102. (TGT)41232912713291282Coding
103. (TGC)41233172823317293Coding
104. (TTC)41233305853330596Coding
105. (TAA)41233729283372939Coding
106. (ACT)41234865113486522Coding
107. (AGC)41235111833511194Coding
108. (CGA)41235429303542941Coding
109. (ATG)41235469163546927Coding
110. (CTT)41235931563593167Coding
111. (CAG)41236037163603727Coding
112. (AAT)61836171493617166Coding
113. (TTA)41236526923652703Coding
114. (CTG)41236749103674921Coding
115. (TAA)41237083873708398Non coding
116. (AAT)41237727113772722Coding
117. (TAA)41238299333829944Coding
118. (CGA)41238300663830077Coding
119. (AAT)41238395903839601Coding
120. (TAA)41239660183966029Coding
121. (TAT)41239784663978477Coding
122. (AAT)41240190464019057Coding-Non coding
123. (CAG)41240355354035546Coding
124. (ACA)41240565914056602Coding
125. (ATC)41240598734059884Coding
126. (ACC)41240824514082462Coding
127. (TTA)41240962894096300Coding
128. (GTC)41241306264130637Coding
129. (TCA)41241392084139219Coding
130. (TTG)41242217894221800Coding
131. (TTA)41242309244230935Coding
132. (ACC)41242578024257813Coding
133. (CAG)41242594544259465Coding
134. (ATT)41242803654280376Coding
135. (AGA)41243211994321210Coding
136. (GTT)41243228704322881Coding
137. (TTA)41243318844331895Coding
138. (TGG)41243399464339957Coding
139. (GCT)41243871554387166Coding
140. (CAT)41244390424439053Coding
141. (CAT)41244390694439080Coding
142. (CAG)41244490004449011Coding
143. (ACA)51544518704451884Coding
144. (ATC)41245158674515878Coding
145. (TAT)41245159974516008Coding
146. (CGA)41245902364590247Coding
147. (GAA)51546291934629207Coding
148. (TTA)41246358094635820Coding
149. (ATT)41246527834652794Coding
150. (ATA)41246767564676767Coding
151. (TAA)41246768234676834Coding
152. (AAC)41247050734705084Coding
153. (CTC)41247127814712792Coding
154. (TTC)41247914104791421Coding
155. (AAT)41247967364796747Coding
156. (ATC)41248118864811897Coding
157. (CAA)51548598904859904Coding
158. (GAC)41249238704923881Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.