CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Cyanothece sp. ATCC 51142 (NC_010546 4934272 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 284     Density of SSR      : 1SSR/ 17.37 kb   Average length of SSR  : 12.61 bp
Coding      : 231     Non-Coding           : 44   Coding and Non-Coding : 9
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 1 2 158 98 15 10 284
IMPERFECT 4 127 2230 1469 193 127 4150
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (GTAG)3128234682357Non coding
2. (TTCT)312165888165899Non coding
3. (TTAA)312282354282365Coding-Non coding
4. (CAAT)312494442494453Non coding
5. (TAAA)312518845518856Coding
6. (TTTG)312528007528018Coding
7. (TTTG)312532261532272Coding
8. (TTAT)312601664601675Non coding
9. (AAAG)312621397621408Coding
10. (CTTT)312709938709949Coding
11. (GAAA)312791063791074Non coding
12. (AGTT)312813148813159Coding
13. (GTAA)31210094841009495Coding
14. (AAAT)31210218721021883Coding
15. (AATC)31211424141142425Coding
16. (TTAT)31212156841215695Coding
17. (CATA)31212215871221598Coding
18. (TAAA)31212621671262178Non coding
19. (TAAT)31213109831310994Coding
20. (TAAT)31213817071381718Non coding
21. (TTCT)31214167241416735Coding
22. (TTAT)31214236711423682Non coding
23. (AAAC)31214830131483024Non coding
24. (GTTT)31215763461576357Coding
25. (TAAG)31216042781604289Coding
26. (AATT)31216075331607544Coding
27. (TTAT)31216241391624150Coding
28. (TTAT)31216519791651990Non coding
29. (AAAT)31216917471691758Coding
30. (GATG)31217174441717455Coding
31. (AGTT)31217322721732283Non coding
32. (TTTA)31217539641753975Coding
33. (TCTT)31217704531770464Coding
34. (TAAA)31218094831809494Coding
35. (ATTA)31218551431855154Coding-Non coding
36. (GGAA)31218698711869882Coding
37. (TAAA)31218705191870530Coding
38. (TCAA)31218754711875482Coding
39. (ATTA)31218925111892522Coding
40. (GGGT)31219253891925400Coding
41. (AACC)31219504561950467Coding
42. (ATTG)31219687421968753Non coding
43. (AATA)31220580392058050Coding
44. (TTTA)31220836762083687Coding
45. (ATGA)31221625522162563Non coding
46. (AGTT)31221807982180809Coding
47. (TTAT)31222286732228684Non coding
48. (ATTA)31222968762296887Coding
49. (ATAA)31223532782353289Non coding
50. (ATTA)31223809282380939Non coding
51. (AATA)31224450212445032Coding
52. (TATC)31224589222458933Coding
53. (AACT)31224711252471136Coding
54. (ATTT)31225119882511999Coding
55. (GTTT)31226192542619265Coding
56. (TAAA)31226596062659617Coding
57. (GTTC)31227480882748099Coding
58. (AAAT)31227502962750307Coding
59. (TTTA)31228768122876823Coding
60. (ATTA)31229058612905872Coding-Non coding
61. (TAAT)31230299543029965Coding
62. (CAAC)31230347163034727Coding
63. (ATAA)31230998613099872Non coding
64. (ATTA)31232171163217127Non coding
65. (ATTT)31232284463228457Coding
66. (TAAT)31232591633259174Coding
67. (CAAA)31232628163262827Coding
68. (ATTA)31233194563319467Non coding
69. (AATC)31233727203372731Coding
70. (AATA)31233731343373145Coding
71. (AAAT)31233963163396327Coding
72. (AATT)31233980613398072Non coding
73. (GTCT)31234377683437779Non coding
74. (TTGA)31235787393578750Coding
75. (AGTC)31236331323633143Coding
76. (AATT)31236768313676842Non coding
77. (ACCA)31237652373765248Coding
78. (AATT)31238045543804565Coding-Non coding
79. (TAAC)31239364173936428Coding
80. (TAAT)31239387843938795Coding
81. (AATT)31239773143977325Coding
82. (CAAT)31240238974023908Coding
83. (AAAT)31240325584032569Non coding
84. (TAAT)31240887374088748Non coding
85. (CAAT)41641478074147822Coding-Non coding
86. (ATTT)31242023664202377Coding
87. (AATT)31243703994370410Non coding
88. (AATT)31244703034470314Non coding
89. (ATAA)31244863784486389Coding-Non coding
90. (ATAA)31245615454561556Coding-Non coding
91. (TTAA)31245633064563317Non coding
92. (CATC)31245714294571440Coding
93. (AGAA)31246745274674538Coding
94. (TTTA)31246904264690437Coding
95. (ATAA)31247223194722330Coding
96. (TGAT)31247613104761321Coding
97. (TAAT)31247726514772662Coding-Non coding
98. (CAAT)31248384364838447Non coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.