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Organism:
Cyanothece sp. ATCC 51142
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(NC_010546 , 4934272 bp)
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Download
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Compound
:
0
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Perfect Compound
:
0
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Overlapping Compound
:
0
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Perfect
:
284
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Density of SSR
:
1SSR/
17.37
kb
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Average length of SSR
:
12.61
bp
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Coding
:
231
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Non-Coding
:
44
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Coding and Non-Coding
:
9
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Perfect SSRs
| S. No. | MOTIF | LENGTH | START | END | REGION |
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1.
| (GTAG)3 | 12 | 82346 | 82357 | Non coding |
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2.
| (TTCT)3 | 12 | 165888 | 165899 | Non coding |
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3.
| (TTAA)3 | 12 | 282354 | 282365 | Coding-Non coding |
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4.
| (CAAT)3 | 12 | 494442 | 494453 | Non coding |
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5.
| (TAAA)3 | 12 | 518845 | 518856 | Coding |
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6.
| (TTTG)3 | 12 | 528007 | 528018 | Coding |
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7.
| (TTTG)3 | 12 | 532261 | 532272 | Coding |
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8.
| (TTAT)3 | 12 | 601664 | 601675 | Non coding |
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9.
| (AAAG)3 | 12 | 621397 | 621408 | Coding |
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10.
| (CTTT)3 | 12 | 709938 | 709949 | Coding |
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11.
| (GAAA)3 | 12 | 791063 | 791074 | Non coding |
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12.
| (AGTT)3 | 12 | 813148 | 813159 | Coding |
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13.
| (GTAA)3 | 12 | 1009484 | 1009495 | Coding |
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14.
| (AAAT)3 | 12 | 1021872 | 1021883 | Coding |
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15.
| (AATC)3 | 12 | 1142414 | 1142425 | Coding |
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16.
| (TTAT)3 | 12 | 1215684 | 1215695 | Coding |
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17.
| (CATA)3 | 12 | 1221587 | 1221598 | Coding |
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18.
| (TAAA)3 | 12 | 1262167 | 1262178 | Non coding |
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19.
| (TAAT)3 | 12 | 1310983 | 1310994 | Coding |
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20.
| (TAAT)3 | 12 | 1381707 | 1381718 | Non coding |
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21.
| (TTCT)3 | 12 | 1416724 | 1416735 | Coding |
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22.
| (TTAT)3 | 12 | 1423671 | 1423682 | Non coding |
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23.
| (AAAC)3 | 12 | 1483013 | 1483024 | Non coding |
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24.
| (GTTT)3 | 12 | 1576346 | 1576357 | Coding |
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25.
| (TAAG)3 | 12 | 1604278 | 1604289 | Coding |
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26.
| (AATT)3 | 12 | 1607533 | 1607544 | Coding |
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27.
| (TTAT)3 | 12 | 1624139 | 1624150 | Coding |
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28.
| (TTAT)3 | 12 | 1651979 | 1651990 | Non coding |
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29.
| (AAAT)3 | 12 | 1691747 | 1691758 | Coding |
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30.
| (GATG)3 | 12 | 1717444 | 1717455 | Coding |
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31.
| (AGTT)3 | 12 | 1732272 | 1732283 | Non coding |
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32.
| (TTTA)3 | 12 | 1753964 | 1753975 | Coding |
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33.
| (TCTT)3 | 12 | 1770453 | 1770464 | Coding |
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34.
| (TAAA)3 | 12 | 1809483 | 1809494 | Coding |
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35.
| (ATTA)3 | 12 | 1855143 | 1855154 | Coding-Non coding |
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36.
| (GGAA)3 | 12 | 1869871 | 1869882 | Coding |
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37.
| (TAAA)3 | 12 | 1870519 | 1870530 | Coding |
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38.
| (TCAA)3 | 12 | 1875471 | 1875482 | Coding |
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39.
| (ATTA)3 | 12 | 1892511 | 1892522 | Coding |
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40.
| (GGGT)3 | 12 | 1925389 | 1925400 | Coding |
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41.
| (AACC)3 | 12 | 1950456 | 1950467 | Coding |
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42.
| (ATTG)3 | 12 | 1968742 | 1968753 | Non coding |
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43.
| (AATA)3 | 12 | 2058039 | 2058050 | Coding |
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44.
| (TTTA)3 | 12 | 2083676 | 2083687 | Coding |
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45.
| (ATGA)3 | 12 | 2162552 | 2162563 | Non coding |
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46.
| (AGTT)3 | 12 | 2180798 | 2180809 | Coding |
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47.
| (TTAT)3 | 12 | 2228673 | 2228684 | Non coding |
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48.
| (ATTA)3 | 12 | 2296876 | 2296887 | Coding |
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49.
| (ATAA)3 | 12 | 2353278 | 2353289 | Non coding |
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50.
| (ATTA)3 | 12 | 2380928 | 2380939 | Non coding |
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51.
| (AATA)3 | 12 | 2445021 | 2445032 | Coding |
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52.
| (TATC)3 | 12 | 2458922 | 2458933 | Coding |
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53.
| (AACT)3 | 12 | 2471125 | 2471136 | Coding |
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54.
| (ATTT)3 | 12 | 2511988 | 2511999 | Coding |
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55.
| (GTTT)3 | 12 | 2619254 | 2619265 | Coding |
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56.
| (TAAA)3 | 12 | 2659606 | 2659617 | Coding |
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57.
| (GTTC)3 | 12 | 2748088 | 2748099 | Coding |
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58.
| (AAAT)3 | 12 | 2750296 | 2750307 | Coding |
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59.
| (TTTA)3 | 12 | 2876812 | 2876823 | Coding |
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60.
| (ATTA)3 | 12 | 2905861 | 2905872 | Coding-Non coding |
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61.
| (TAAT)3 | 12 | 3029954 | 3029965 | Coding |
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62.
| (CAAC)3 | 12 | 3034716 | 3034727 | Coding |
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63.
| (ATAA)3 | 12 | 3099861 | 3099872 | Non coding |
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64.
| (ATTA)3 | 12 | 3217116 | 3217127 | Non coding |
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65.
| (ATTT)3 | 12 | 3228446 | 3228457 | Coding |
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66.
| (TAAT)3 | 12 | 3259163 | 3259174 | Coding |
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67.
| (CAAA)3 | 12 | 3262816 | 3262827 | Coding |
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68.
| (ATTA)3 | 12 | 3319456 | 3319467 | Non coding |
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69.
| (AATC)3 | 12 | 3372720 | 3372731 | Coding |
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70.
| (AATA)3 | 12 | 3373134 | 3373145 | Coding |
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71.
| (AAAT)3 | 12 | 3396316 | 3396327 | Coding |
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72.
| (AATT)3 | 12 | 3398061 | 3398072 | Non coding |
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73.
| (GTCT)3 | 12 | 3437768 | 3437779 | Non coding |
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74.
| (TTGA)3 | 12 | 3578739 | 3578750 | Coding |
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75.
| (AGTC)3 | 12 | 3633132 | 3633143 | Coding |
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76.
| (AATT)3 | 12 | 3676831 | 3676842 | Non coding |
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77.
| (ACCA)3 | 12 | 3765237 | 3765248 | Coding |
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78.
| (AATT)3 | 12 | 3804554 | 3804565 | Coding-Non coding |
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79.
| (TAAC)3 | 12 | 3936417 | 3936428 | Coding |
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80.
| (TAAT)3 | 12 | 3938784 | 3938795 | Coding |
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81.
| (AATT)3 | 12 | 3977314 | 3977325 | Coding |
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82.
| (CAAT)3 | 12 | 4023897 | 4023908 | Coding |
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83.
| (AAAT)3 | 12 | 4032558 | 4032569 | Non coding |
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84.
| (TAAT)3 | 12 | 4088737 | 4088748 | Non coding |
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85.
| (CAAT)4 | 16 | 4147807 | 4147822 | Coding-Non coding |
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86.
| (ATTT)3 | 12 | 4202366 | 4202377 | Coding |
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87.
| (AATT)3 | 12 | 4370399 | 4370410 | Non coding |
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88.
| (AATT)3 | 12 | 4470303 | 4470314 | Non coding |
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89.
| (ATAA)3 | 12 | 4486378 | 4486389 | Coding-Non coding |
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90.
| (ATAA)3 | 12 | 4561545 | 4561556 | Coding-Non coding |
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91.
| (TTAA)3 | 12 | 4563306 | 4563317 | Non coding |
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92.
| (CATC)3 | 12 | 4571429 | 4571440 | Coding |
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93.
| (AGAA)3 | 12 | 4674527 | 4674538 | Coding |
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94.
| (TTTA)3 | 12 | 4690426 | 4690437 | Coding |
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95.
| (ATAA)3 | 12 | 4722319 | 4722330 | Coding |
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96.
| (TGAT)3 | 12 | 4761310 | 4761321 | Coding |
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97.
| (TAAT)3 | 12 | 4772651 | 4772662 | Coding-Non coding |
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98.
| (CAAT)3 | 12 | 4838436 | 4838447 | Non coding |
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Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71
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