CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Cyanothece sp. ATCC 51142 (NC_010547 429702 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 32     Density of SSR      : 1SSR/ 13.43 kb   Average length of SSR  : 12.38 bp
Coding      : 22     Non-Coding           : 8   Coding and Non-Coding : 2
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 0 0 18 12 1 1 32
IMPERFECT 1 8 179 117 16 10 331
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (TTTA)3122984929860Coding
2. (TTTG)3123231432325Coding
3. (ATC)4124907049081Coding
4. (ATT)4125387053881Coding
5. (ATT)4129163491645Coding-Non coding
6. (ATTATC)3189480694823Non coding
7. (CAGT)312104647104658Coding
8. (TAG)412120783120794Coding
9. (ATG)412121842121853Coding
10. (GTTT)312130019130030Coding
11. (CTT)412130149130160Coding
12. (GGT)412130417130428Coding
13. (TTGG)312152593152604Coding
14. (CAA)412166394166405Non coding
15. (CTA)412169453169464Coding
16. (GAA)412172840172851Coding
17. (TCAA)312177799177810Coding
18. (TCT)412225458225469Coding
19. (TCA)412237483237494Coding
20. (AATT)312250445250456Non coding
21. (AAGAT)315258675258689Coding
22. (TGTC)312260916260927Non coding
23. (ACTA)312262348262359Coding-Non coding
24. (AGA)412287995288006Non coding
25. (TAT)412288535288546Non coding
26. (TTC)412307612307623Coding
27. (AAT)515309097309111Coding
28. (GAT)412336842336853Coding
29. (TAAT)312341879341890Coding
30. (ATAA)312354627354638Non coding
31. (AAAG)312373259373270Non coding
32. (TTC)412420798420809Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.