CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
HOME ABOUT DATABASE ADVANCED SEARCH TUTORIAL STATISTICS CONTACT
       Organism: Cyanothece sp. PCC 7424 (NC_011729 5942653 bp)                                                               Show Primer       Download
Compound : 2     Perfect Compound : 1   Overlapping Compound : 1
Perfect      : 384     Density of SSR      : 1SSR/ 15.4 kb   Average length of SSR  : 12.97 bp
Coding      : 255     Non-Coding           : 112   Coding and Non-Coding : 19
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 2 3 185 155 14 25 384
IMPERFECT 14 165 2198 1795 248 172 4592
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (CCACCC)318105348105365Coding
2. (CAAGCC)318485669485686Coding
3. (CTTGGG)318853807853824Coding
4. (CATAAG)31814353391435356Coding
5. (CTTTTA)31814360511436068Coding
6. (ACGATC)31816946901694707Coding
7. (CACCAG)31819923191992336Coding
8. (ATCAGA)31820768192076836Coding
9. (ATGATT)42428275152827538Coding
10. (CTCAAG)31829312832931300Coding
11. (GAGGAA)31830949103094927Coding
12. (CTAATC)31831534703153487Coding
13. (GGTTTA)31835364643536481Coding
14. (ACCCGA)31835839453583962Coding
15. (ATAAAA)31836963653696382Coding
16. (CTAATT)31838495823849599Coding
17. (TTCGGG)42438673563867379Coding
18. (GGTAAC)42439877853987808Coding
19. (AGCAGG)31845122804512297Coding
20. (GGGTTG)42446766244676647Coding
21. (TTGAGG)42446766634676686Coding
22. (GGGTTC)31848656874865704Coding
23. (GAGGAA)31855621285562145Coding
24. (TCAAGA)31856102565610273Coding
25. (GAAGAC)31858760165876033Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.