CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Cyanothece sp. PCC 7424 (NC_011729 5942653 bp)                                                               Show Primer       Download
Compound : 2     Perfect Compound : 1   Overlapping Compound : 1
Perfect      : 384     Density of SSR      : 1SSR/ 15.4 kb   Average length of SSR  : 12.97 bp
Coding      : 255     Non-Coding           : 112   Coding and Non-Coding : 19
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 2 3 185 155 14 25 384
IMPERFECT 14 165 2198 1795 248 172 4592
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (CGT)4125342953440Coding
2. (TCG)6185390553922Coding
3. (CGA)412105323105334Coding
4. (AGC)515127132127146Coding
5. (ATT)412144246144257Coding-Non coding
6. (ATT)412197184197195Coding
7. (AGG)412243875243886Coding
8. (GAT)412251275251286Coding
9. (AGC)412266701266712Coding
10. (TCT)412284430284441Coding
11. (TAA)412325597325608Coding
12. (TGC)412411747411758Coding
13. (TTG)412457940457951Coding
14. (CAA)412482887482898Non coding
15. (CCG)412483092483103Coding
16. (CAA)412489371489382Coding
17. (AAT)412493856493867Coding
18. (ATT)412511484511495Coding
19. (GCG)412521874521885Non coding
20. (CCG)412595849595860Coding
21. (TTC)412605531605542Coding
22. (GCA)412607890607901Coding
23. (TTG)412615488615499Coding
24. (CGA)412641427641438Coding
25. (TCG)412684674684685Coding
26. (ATT)412709378709389Coding
27. (ATG)412734455734466Coding
28. (TGA)412734483734494Coding
29. (GAA)412753534753545Coding
30. (TTG)412782074782085Non coding
31. (TGG)412798537798548Coding
32. (AAG)515805125805139Coding
33. (TGT)515814743814757Non coding
34. (TGA)515828906828920Coding
35. (CGG)515893846893860Coding
36. (ATT)412899369899380Coding
37. (ATA)412912334912345Non coding
38. (CGC)412933080933091Coding
39. (AGC)412946010946021Coding
40. (GAC)412974471974482Coding
41. (TGT)412995103995114Coding
42. (ATT)41210397051039716Coding
43. (GCC)41211138051113816Coding
44. (GCC)41211722951172306Coding
45. (TGC)41212044641204475Coding
46. (GCC)41212078151207826Coding
47. (AAG)41212196571219668Coding
48. (TCC)41212468681246879Coding
49. (ATC)41212808121280823Coding
50. (TCA)51513034841303498Coding
51. (TAA)41213123051312316Coding
52. (CTT)41214458371445848Coding
53. (GCC)41215134971513508Coding
54. (TTA)41215424761542487Coding
55. (ATA)41215977601597771Non coding
56. (TTC)41216022641602275Coding
57. (ATT)51516091921609206Coding
58. (TTA)41216234511623462Coding
59. (TAA)41216587111658722Coding
60. (CAT)41216606761660687Coding
61. (TTA)41216715921671603Coding
62. (GCG)41217711421771153Coding
63. (TTG)41217934921793503Coding
64. (AGG)41218059361805947Coding
65. (AGG)41218074481807459Coding
66. (AGG)41218081771808188Coding
67. (GAT)41218292481829259Coding
68. (AAT)41218365841836595Coding
69. (GAT)51518930151893029Coding
70. (AGT)41219643721964383Coding
71. (ATT)41220217082021719Coding
72. (ATC)41220759502075961Coding
73. (TAT)41221850002185011Coding
74. (ATA)41222137402213751Coding
75. (TAC)41222539792253990Coding
76. (CTT)41222603782260389Coding
77. (TTG)41223411232341134Coding
78. (CGG)41223491612349172Coding
79. (TTC)41223645722364583Coding
80. (CAA)41223871722387183Coding
81. (TAA)41224444822444493Coding
82. (AGC)41224466252446636Coding
83. (AAT)41224627252462736Non coding
84. (TAT)41225321622532173Coding
85. (CTG)41225354782535489Coding
86. (TGT)41226647872664798Coding
87. (GTT)41226649742664985Coding
88. (TTG)51526813812681395Coding
89. (TTA)41227072922707303Coding
90. (TTA)41227074632707474Coding
91. (TGA)41227817062781717Coding
92. (CTG)51527965372796551Coding
93. (TAA)41228487072848718Non coding
94. (TCT)41229509352950946Coding
95. (TCC)41229759692975980Coding
96. (AAT)41230110353011046Non coding
97. (CGG)41230261043026115Coding
98. (CAA)41230370683037079Coding
99. (ATC)41230465963046607Non coding
100. (CAT)41230503553050366Non coding
101. (TAA)41230598333059844Coding
102. (ACC)41230651733065184Coding
103. (CAG)41231119823111993Coding
104. (CCA)41231693433169354Coding
105. (TGG)41231856963185707Coding
106. (TAT)41231863723186383Coding
107. (ACA)41231884343188445Coding
108. (TTA)41231884833188494Coding
109. (TTC)41232164843216495Coding
110. (TCT)41232345633234574Coding
111. (CAT)41233384543338465Coding
112. (AAT)41234824093482420Coding
113. (AAT)41234826793482690Non coding
114. (AGG)51535837703583784Coding
115. (AAT)41235964453596456Non coding
116. (CGC)41236013373601348Coding
117. (TCC)72136248783624898Coding
118. (ATT)41236863733686384Coding
119. (ATT)41236929113692922Non coding
120. (ATT)41237007893700800Non coding
121. (CCG)41237548073754818Coding
122. (AAG)41237967183796729Non coding
123. (CTG)41238066323806643Coding
124. (GGT)41238343053834316Coding
125. (AGC)41238781863878197Coding
126. (CGA)41238862843886295Coding
127. (GGA)41238885093888520Coding
128. (TCC)41238904293890440Coding
129. (TTC)41239053693905380Coding
130. (CGG)41239281683928179Coding
131. (AAG)72139292333929253Coding
132. (TAT)41239800533980064Coding
133. (AGT)41240113214011332Non coding
134. (CCA)41240263614026372Coding
135. (CCA)41240287314028742Coding
136. (CGG)41240367654036776Coding
137. (GAT)51540807834080797Coding
138. (TGT)41241787524178763Coding
139. (AAT)41243511294351140Coding
140. (AAT)41243513004351311Coding
141. (CAT)51543842264384240Coding
142. (CTA)41244056634405674Coding
143. (GAA)41244257354425746Coding
144. (TTA)41245187164518727Non coding
145. (TTG)41246701614670172Coding
146. (CCG)41246751784675189Coding
147. (GAG)41246767674676778Coding
148. (TGA)41248641324864143Coding
149. (CAT)41248931454893156Coding
150. (GAA)41249018104901821Coding
151. (TTG)41249079864907997Coding
152. (GGT)41249081034908114Coding
153. (ATT)41249404564940467Coding
154. (CAT)41249778114977822Coding
155. (ATT)41249975414997552Non coding
156. (TTC)41250303995030410Coding
157. (GAG)41250372275037238Coding
158. (ACA)41251332815133292Coding
159. (TTA)41251352265135237Coding
160. (GTT)41251447185144729Non coding
161. (TAA)41251901135190124Coding
162. (CGG)41251940765194087Coding
163. (CAA)41252861075286118Coding
164. (CTC)41253209315320942Coding
165. (AAG)41253949015394912Coding
166. (TAT)41254237665423777Coding
167. (TGT)41254507535450764Coding
168. (GCC)51555236955523709Coding
169. (GTT)41255350765535087Coding
170. (AAG)41255686345568645Coding
171. (CTC)41255748795574890Non coding
172. (TGG)51555942975594311Coding
173. (GCC)41256439465643957Coding
174. (AAC)41256862275686238Coding
175. (TAA)41256885675688578Coding
176. (TAT)41257025845702595Coding
177. (CGC)41257213615721372Coding
178. (TCT)41257282635728274Coding
179. (CAC)41257528035752814Coding
180. (TTC)41257694005769411Coding
181. (TAG)41257887395788750Coding
182. (ATG)41258204065820417Coding
183. (GGA)41258920845892095Coding
184. (ATA)41258935475893558Coding
185. (AAT)41259077345907745Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.