CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Cyanothece sp. PCC 7424 (NC_011729 5942653 bp)                                                               Show Primer       Download
Compound : 2     Perfect Compound : 1   Overlapping Compound : 1
Perfect      : 384     Density of SSR      : 1SSR/ 15.4 kb   Average length of SSR  : 12.97 bp
Coding      : 255     Non-Coding           : 112   Coding and Non-Coding : 19
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 2 3 185 155 14 25 384
IMPERFECT 14 165 2198 1795 248 172 4592
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (ATAA)312103225103236Non coding
2. (TTAA)312287900287911Non coding
3. (ACAT)312289882289893Coding-Non coding
4. (ATAA)312326622326633Coding
5. (ACTG)312326654326665Coding
6. (ACTG)312345849345860Coding
7. (ATTG)312378167378178Coding
8. (ACTT)312397273397284Non coding
9. (TATT)312431854431865Non coding
10. (ACTC)312489030489041Coding
11. (TTAT)312497554497565Coding
12. (TAAA)312499844499855Non coding
13. (AATT)312504103504114Non coding
14. (TCAA)312507860507871Non coding
15. (AGTC)312508922508933Coding
16. (TAAA)312528503528514Coding
17. (TTTA)312613372613383Coding-Non coding
18. (ATAG)312665872665883Coding
19. (TCCA)312695866695877Coding
20. (TTTC)312721332721343Coding
21. (AATT)312763840763851Non coding
22. (TTTA)312797177797188Coding
23. (CAAA)312873597873608Non coding
24. (AAAT)312946942946953Non coding
25. (AATT)312953717953728Coding
26. (GGTT)312993569993580Coding
27. (ATTA)31210169401016951Coding
28. (AATT)31211371791137190Coding-Non coding
29. (AATA)31211825401182551Non coding
30. (ATTT)31211840381184049Coding
31. (AATT)31212600661260077Non coding
32. (AATT)31212875061287517Non coding
33. (ATTA)31212962631296274Non coding
34. (TTCC)31213135381313549Coding
35. (ATAA)31213202391320250Non coding
36. (TTAA)31213353761335387Non coding
37. (AATT)41613441111344126Non coding
38. (ATTC)31214265321426543Coding-Non coding
39. (ATAA)31215163711516382Coding
40. (ATTT)31215467311546742Non coding
41. (AATC)31215518561551867Non coding
42. (AAAT)41615592031559218Non coding
43. (ATAA)31216129291612940Coding
44. (AATT)31216744111674422Non coding
45. (AATT)31216746441674655Coding
46. (CTTT)31217083611708372Coding
47. (TAAT)31217172041717215Coding-Non coding
48. (CAAC)31217202211720232Coding
49. (GGAT)31217753011775312Coding
50. (TAAT)31217792461779257Non coding
51. (GAAG)31218321421832153Coding
52. (TAAT)31219044541904465Non coding
53. (AGTA)31219051891905200Coding
54. (TAAT)31219053411905352Non coding
55. (ATTT)31219151651915176Non coding
56. (GTTT)31220459302045941Coding
57. (TATT)31220738882073899Coding
58. (ATCT)31221465912146602Coding
59. (AATT)31222191852219196Coding-Non coding
60. (AACA)31222523932252404Non coding
61. (TTAA)31222589912259002Non coding
62. (TTAT)31222606812260692Non coding
63. (TATC)31222902632290274Coding
64. (TGAT)31223971112397122Non coding
65. (TAAT)31224081932408204Non coding
66. (TATT)31224082342408245Non coding
67. (TTAA)31224284002428411Non coding
68. (AATC)31225040522504063Non coding
69. (TCTT)31228380482838059Non coding
70. (AAAT)31228818012881812Coding
71. (AACT)31229846342984645Coding-Non coding
72. (TAAA)31230226593022670Non coding
73. (TTTA)31230226763022687Non coding
74. (ATTT)31230708673070878Coding-Non coding
75. (TAAT)31230801203080131Non coding
76. (AATT)31231136993113710Non coding
77. (AATA)31232123903212401Non coding
78. (TTTA)31232438613243872Non coding
79. (AATT)31232601273260138Non coding
80. (TAAT)31232701973270208Non coding
81. (ATTA)31233205353320546Coding
82. (ATTT)31233557773355788Coding
83. (AATT)31233817183381729Non coding
84. (ATTA)31234171153417126Coding-Non coding
85. (TAAT)31234358213435832Non coding
86. (ATAA)41634561063456121Coding
87. (AATA)41634751023475117Non coding
88. (AATT)31234751533475164Non coding
89. (ATTA)31234758873475898Coding-Non coding
90. (ATTT)31236253933625404Coding
91. (TTAA)31236661953666206Coding-Non coding
92. (TAAT)31236763563676367Non coding
93. (AATC)31236792073679218Coding
94. (CTCC)31236914343691445Coding
95. (AATC)31236930383693049Non coding
96. (CTAT)31237088073708818Non coding
97. (ATAA)31237311523731163Coding
98. (TTAT)31237826983782709Coding
99. (TTTG)31237941033794114Coding
100. (TATT)31238124273812438Coding
101. (TGTT)31238287103828721Coding
102. (AGAT)31238416433841654Coding
103. (AATT)31238478393847850Non coding
104. (TTAA)31238556263855637Coding-Non coding
105. (GGTT)31239225603922571Coding
106. (ATTT)31239780853978096Coding
107. (TTAA)31239998703999881Non coding
108. (TAAT)31240473984047409Non coding
109. (TAAT)31240955094095520Non coding
110. (AATA)31241948754194886Non coding
111. (ATTT)31242183524218363Coding
112. (AAAT)31244391074439118Coding-Non coding
113. (AATT)31244394284439439Non coding
114. (AATA)31244496984449709Non coding
115. (AATA)31244505674450578Non coding
116. (ATAA)31245117744511785Coding-Non coding
117. (TAAA)31245864924586503Coding-Non coding
118. (ATTA)31247070364707047Non coding
119. (AATT)31247529754752986Coding
120. (AATT)31247866794786690Non coding
121. (AATA)31247949944795005Coding
122. (ATTA)31248250374825048Non coding
123. (TAAT)31248580024858013Coding-Non coding
124. (ATTA)31249652204965231Coding-Non coding
125. (ATTT)31249972934997304Non coding
126. (TCTA)31250269145026925Coding
127. (AATT)31250718165071827Coding
128. (TTTA)31250791385079149Non coding
129. (AATT)31251023915102402Non coding
130. (ATAA)31251156025115613Non coding
131. (TATT)31251891585189169Coding
132. (AATA)31252668925266903Non coding
133. (AACC)31252702095270220Non coding
134. (TCTT)31252804155280426Coding
135. (AATA)31253594135359424Coding
136. (TAAT)31253701545370165Non coding
137. (TAAT)31253732925373303Non coding
138. (CTGA)31254319525431963Coding
139. (ATTA)31254917485491759Non coding
140. (AATT)31255021965502207Non coding
141. (TAAT)31255463635546374Non coding
142. (ATTA)31255867715586782Non coding
143. (CAGA)31256030825603093Coding
144. (CTGT)31256933805693391Non coding
145. (AATT)31257290945729105Coding
146. (TGTT)31257435475743558Coding
147. (CCAA)31257470695747080Coding
148. (CAGC)31257737365773747Coding
149. (AAAT)31257942505794261Non coding
150. (AATT)31257983525798363Coding
151. (TTCC)31258079125807923Non coding
152. (ATTT)31258329235832934Coding
153. (AATT)31258377275837738Non coding
154. (TTTA)31258819155881926Coding
155. (AATT)31259054735905484Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.