CyanoSat: A Database of Cyanobacterial Perfect and Imperfect Microsatellites
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       Organism: Cyanothece sp. PCC 7425 (NC_011884 5374575 bp)                                                               Show Primer       Download
Compound : 0     Perfect Compound : 0   Overlapping Compound : 0
Perfect      : 205     Density of SSR      : 1SSR/ 26.22 kb   Average length of SSR  : 12.8 bp
Coding      : 185     Non-Coding           : 20   Coding and Non-Coding : 0
REPEATMONODITRITETRAPENTAHEXATOTAL
PERFECT 1 1 110 68 9 16 205
IMPERFECT 1 107 1353 1176 169 110 2916
Perfect SSRs
S. No.MOTIFLENGTHSTARTENDREGION
1. (GCTCTG)318731910731927Coding
2. (GGCATT)318831964831981Coding
3. (GATCAT)318906035906052Coding
4. (ATGTCG)31813057291305746Coding
5. (CTATGA)31813113181311335Coding
6. (CCAGTC)31816614191661436Coding
7. (TTCAGA)63623087412308776Non coding
8. (GGCTCC)31824996412499658Coding
9. (GATCAG)31829119682911985Coding
10. (GTGGCG)31829739302973947Coding
11. (ACTAAA)31832373233237340Non coding
12. (GCCGGA)31833252393325256Coding
13. (GCCCTG)31834407583440775Coding
14. (CAGGGG)31839564053956422Non coding
15. (CCTGAG)31848245104824527Coding
16. (AACCAG)31851911165191133Coding
Kabra,R., Kapil,A., Attarwala,K., Rai,P.K. and Shanker,A. World J Microbiol Biotechnol (2016) 32:71                                                      Best viewed at 1280 x 768.